slc22a16 (LOC106571810)


Basic Information

Item Value
gene id slc22a16
gene name LOC106571810
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 39956961 ~ 40017167 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036985462.1
GTCCCCTATTTGCGCGCCCCTCCTACTCCGTGTTCAAGTGAAAGCCAACATTTACAAATTGTCAGTGGCGAGCCAGACCTGTCAACGAGTTATGAGCGTGGAGCGTATATTCGATGAGTTTGGACACTTCAAAAGGTTCCAGGCATGTCTGTACTTTGCTGCTGTCTTCCAAGCCATAGCCTGTGGAATCCACTACCTGGCCTCCGTGTTCCTCGTGGAGAGGCCAAACTTTGTCTGTGCTCCGCCAGGTAACATCACTGACGTCCTGTATGGGAACCACACTGGTGCTTCCCTGGAGGAGGTGCTACCATTCTTCAAACCGGCGAACGGGCCCATGGTGGTCCGAACGGCTGTGGGCCAACAGTGGGAGCTTAGCACCTGCCAGCGCACTCAGCGGATGAACCCCACAGATTTTACCTACGAGCAGGTCGTCAACAGGACGACGGAAAAGTGTGACGGGAACTACCATTACGTGTACGACCACAGTGAGGTGTATCAGAGCATCGTGACGGACTGGGACCTGGTGTGTGACAGGGAATGGCTGGCCAAGCTGTGTCAGCCCACGTTTATGATGGGGGTGCTGATCGGAGCACTGGTGTTTGGGGACATCGCTGATAGggttggCAGACAGAGGATCCTAATGATCACCAGCCTCTGCCAGTTTGTGTTTGGTGTAAGCGTGGCATTCATGGGAAACTACTACCTATTTATGGTCATCCGCTTCCTGCTCGCCATGGTGTCCAGCGGTTACCTTGTGGTGGTGTTTGTGTACGTGACCGAGTTCACCGGCAACAAGGTACGCACGTGGACCTCCATGCACGTGCACGCCGCCTTTGCCGCAGGCGTCATGATGGTGGCGATCACGGGCTACCTAGTGCGTACCTGGTGGATCTACCAGATCATCCTCTCCACCTGCACCTCGccctttctcttcttctgctgGAAGTTTCCAGAGACACCCTTCTACCTGATGGCTAAGGGGAGGCTCCAGGAGACCCAGGTCCTGTTGGATTCCATAGCCCGCTTCAACGGCCTGGAGCCTGGCCGTCTGAGGGCCGAGGACCTCCTGGAACCCAAGGAGGCTCTGCTGGAGAAAGAGATGGTACCGGGAAGAGCCCAGCCAGCGGAGCCCGAGAGAAAGCTGAGCATCCTGGACCTGTTTGGGACATGGAGGATGACCTGGAGGACAGTGACAGTGTGGGCAGTGTGGTTCATTGGCAGCCTGGGCTACTACGTCTTCTCCCTGGGCTCCGTCAACCTGGGTGGCAACCAGTACATCAACCTCTTCCTGGCTgGTGCAGTGGAGTTCCCTTCCTACCTGATTGGCTGTTATGCGATGGACCGGGTGGGCAGGAAGAGAACATGTGCCCCAGCTCTGCTGCTGGCTGGAACGGCCTGCATGCTCATCATTGTGGTGCCAAATGACATTGAGGTGTTAGTCATCATCCTCAGTATGACAGGGAAGTTTGCCATTGCCATAGCCTTTGGTCTCATCTACCTCTACACCTGTGAGCTCTACCCAACTATCATCAGGTCCCTGGCGGTGGGCAGTGGCAGTATGATGTGTCGTGTGGGCAGCATCGTGGCTCCTTTCTGTGTCTACCTAGCTGACATCTGGCAATACCTACCACAGCTGATTGTGGGGATCCTTGCGTTTATAATAGGTGTTCTGACCCTGTTGTTACCAGAGACCCTGGGTGAGCCCTTGACCAGCACCATGGAGGAGGCTGAGGCTCTAGGCAGGAAGAGTAGCCCTGATCAGGGAAAGAAAGACCctgaggagggggtggagatgaACTAGATCCAGAGCAACTAGTTGGACGGCAAGCCCTGAGGGATACACCTCACCACCAACCAGAGAGAAGGAGGTGgccagggatagagagggagtaggaagtggaggagagagagaaggagagagactacTGGAAGCGATACCAAGAAACCAACAAAATAAACAACCGCAAAAACAAACAACATCGAATTTGGAACCTTAGTAGAACTTTTTGtaataaagtgtttttttttacatttgttctGCAAAGTGGCCAATTTCAGAGCTGGTATGCTCTGGTTGAGCCAACCAACCGCAGCCAACCTCTGAGTTCCTTGGCTGCAGCtgttcagacagagacagagggaagtgAAGTGAAGGCCCTTTATTCACCACATCTCAGTCTCCTGATGAGAGCCACATGAAACTGAGCCTCATGTTCGATATTCACGTCACGTGTGCCTTCCAATCACAGCCACTAATGAATGTGTGTGCGAGAGattgagagtgagaaagaaagagtgtgCAGGTTCTATGAaggaagtgtgtgtgcatgcatgtgtgcgtgcatgcccgtgtgtgtgcgtttgaaatttgacgtttcaCTGACTGAGACTGTGATTTAGTTACCTCTATTCAGCCCGATGATCATCTAGTGCAGCTGATTTTGGCTATGTGTTACTAACAATGCTATTGTTATGTCATTTAAAGTGTACTTTGTTTATCTGAAGTCCAccgacacacgcacgcacgcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagagaaaagtgCATAGTGTTTGTGTTTTCTATAAGTACTTTATACTGAATCTATCTCAGGGCATCCACCATAAGATATCACCGTGATAatatacagtgtatttggaaactagtctccttctccttttccacattttgtgacgttacagccttattctaaaatggattaaataaaataaaaatccttatcaatctacacacaatactccataatga
>TU804129
acacacacacacacacacacacacacacacagagaaaagtgCATAGTGTTTGTGTTTTCTATAAGTACTTTATACTGAATCTATCTCAGGGCATCCACCATAAGATATCACCGTGATAatatacagtgtatttggaaactagtctccttctccttttccacattttgtgacgttacagccttattctaaaatggattaaataaaataaaaatccttatcaatctacacacaatactccataatgacaaaacaggttttcagattTTTTTGGGCAAAAAAAAggaaccttatttacataagtattcagacccttcgttatgagactcgaaattgagttcaggtgcatcctgtttccattgatcattcttgagatgtttctacagcttgattggagtccacctgtggtaaattaaattgattggacatgatttggaaaggcacacacctgtatctATATGGTCCCacagccatgaggtcaaaggaattgtccgtagagctccaagacaggattgtgttgaggcacagatctggggaagggtaccaaaaaatgtctgcatcattgaaggttctcaagaacacagtggcctctttcattcttaaatggaagaagtttggaactaccaagactcttcctagagctggcctcccggccaaactgagcaattgggaggTGGTTAgggagggaggtgaccaagaacccaatggtcaatctgacagagctccagacttactatgtggagatgtgagaaccttccagaaggacaaccatctctgcagtactccaccaatcaggcctttatagtagagtggctagacgcaagccactcctcagtaaaaggcacatgacagcctgcttggagtttgcaaaaataCACATAAAGGACTCACAGACTatgagaaacaggattctctggtttgatgaaaccaagattgaactctttggcctgaatgctaaccgtcacgtctggaggaaacctggcaccatccatacggtgaaacatggtggtggcagcatcatgctgtggggctgttttcagctgcagggactgggagtctagtcaggattgagtcaaagattaacagagcaaattacagagacatccttgatgaaacatcctgctccagagcgctcactacctcagactggggggaaagttcaccttccaacaggacaacctgattgaacatctctggagagacctgaaagtaacTGATGCTcaccatacaacctgacagagcttgagagtatctgcagagaagaatgggagaaactccccaaatacagattcaaacacgcaaccttATGCACCAGAGGCAGATGTGTACTCCCAGCCACCATCTCCATCTGAAACcaacttgaaggtaacagcgctcactgttgcccctagtgggcGGTTTCCATGTCATCGCCCGATGTCCCGACGTGCACATGTGCGCTTGCGCCTGTGTTTGTTTTTGCGTGTTCTGATGCGATGGACTACCTTAAagaagtgagtgtgtgtgggtgtgcatgaATATAAATGAAGTAAGCTACATTCTAGTCTCCCATCCAGAAATGGATCAAGTAGACTTCTTTCTCTGTGTTGGGAGCATAGTTCCTGGATGAAAAGATAGAAGAAAGACATTgctgtatttaaaaaaagaaagaatggGTTTTGTTCATGTTTCGAAATGTTCTGATTACTCTTTAAACCATGATGTTTCTGACCAAAGATGTGACGATGAACACTATGATCTGCTTTTAAATCATTCTAAAACATAATCAGGCAATATACTATgtaaacgaacacacacacagctctgatatTTGGTTTCCTGACATTGGAAATCTATAAAACATCCTCATCAAAAAAAGCAACTGATGCAATTGTcatctgttttttgtttgttttaacagTCTAACAATCATTGAATTGATTGTTAATGTGTATTTTTGTACTGATAGGtttcatgttatttatttttttcatttgaaGGGAAATTAAAAGGAGATGTCT

Function

NR:

description
Putative transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036985462.1 False 2869 mRNA 0.51 8 39959369 40017167
TU804129 True 1997 TUCP 0.42 2 39956961 39959613

Neighbor

gene id symbol gene type direction distance location
LOC110531091 NA coding downstream 905970 39050749 ~ 39053399 (-)
LOC118965515 NA coding downstream 1135324 38822129 ~ 38826089 (-)
LOC110530913 NA coding downstream 1157417 38787513 ~ 38801952 (-)
trnal-uaa-3 NA coding downstream 1519089 38440198 ~ 38440280 (-)
LOC110529893 LOC106571757 coding downstream 1572061 38330693 ~ 38387308 (-)
LOC110530919 cdc40 coding upstream 115024 40132191 ~ 40164976 (-)
LOC118965516 LOC106588149 coding upstream 126744 40143911 ~ 40145193 (-)
armc2 armc2 coding upstream 621104 40638271 ~ 40669501 (-)
LOC110529912 LOC106571799 coding upstream 707230 40724397 ~ 40779631 (-)
LOC118965517 NA coding upstream 762684 40779851 ~ 40800037 (-)
G707129 NA non-coding downstream 37373 39920496 ~ 39921996 (-)
G707140 NA non-coding downstream 51681 39907405 ~ 39907688 (-)
G707137 NA non-coding downstream 56268 39902621 ~ 39903101 (-)
G707130 NA non-coding downstream 64558 39894479 ~ 39894811 (-)
G707119 NA non-coding downstream 69186 39889955 ~ 39890183 (-)
G707168 NA non-coding upstream 7222 40024389 ~ 40024636 (-)
G707234 NA non-coding upstream 85433 40102600 ~ 40104160 (-)
G707316 NA non-coding upstream 247370 40264537 ~ 40269554 (-)
G707362 NA non-coding upstream 323279 40340446 ~ 40340669 (-)
G707366 NA non-coding upstream 329679 40346846 ~ 40347214 (-)
G706683 stxbp5 other downstream 733056 39219644 ~ 39226313 (-)
G704874 NA other downstream 1645566 38313489 ~ 38313803 (-)
G704702 NA other downstream 1921023 38037725 ~ 38038346 (-)
LOC110530908 otof other downstream 2467212 37474229 ~ 37626960 (-)
LOC110529880 LOC106571768 other downstream 2597776 37355096 ~ 37361922 (-)
G709272 NA other upstream 2702604 42719771 ~ 42720699 (-)
G709454 NA other upstream 3153593 43170760 ~ 43171082 (-)
G711133 NA other upstream 4521626 44538793 ~ 44539504 (-)
G712814 NA other upstream 5440610 45457777 ~ 45458248 (-)
crfb16 LOC106568648 other upstream 6293963 46309732 ~ 46325685 (-)

Expression


Co-expression Network