LOC110530919 (cdc40)


Basic Information

Item Value
gene id LOC110530919
gene name cdc40
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 40132191 ~ 40164976 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036986869.1
TCCCTCAGACAACGACCAATAGAGAATTATATCCTGAAAGGTTTATACAATTAATTTCATTGATTAAATATTTAGATCACTCATCTATTGAAAACATAGGAGTGACTTCTGTCATCATAATATTTAACTAAACCATGACGTTTATTATATGTTTGTTCACGTTAATATTACAGAGTGAATACTTTACTTTTAGGACATTTCCGGTAGTGTAGTGCTTTCACAACTTCCAAGATGGCGGCCACCTTCGTTTCGTACTGGAGCGATTCAGATAATGAGACCAAATCTCATGTTAATCCCGAAAAGGTTGACCCCGATGCTCTGGCACATCTTCAACCGTTGAAATCTGGCAAAacaatgtcactgtctgtcctcaatTCAGCTCCTGAGGTCGCCGTAAAGGAGGCTGTGGAGACTGGCGTACATCTGGACCCCTCTCTCAAAGAGGTCACCTACAACCCCACATATGAAACCATGTTTGCGCCAGAGTTTGGTCCTGTCAACCCATATAAAAGTAAACGGATGGCTGCACCCAGGAATATGCTGTCTGGCTATGCAGAGCCTGCTCACGTCAATAACTTTATGTTTGAACAGCAGAGGAGGACCTTCTCCACCTTTGGCTATGCTCTGGATCCGTTTGTGGATACAAGCCAAAACTCCTCCAGTAGCTACATCGGTGCAGTGGACGAGGCAGAGAAAAAGAAAGGATTGACTGTGTTTGAGGTTGGCCCAAAGAAGACTGACAAGAGGAAAAAGGTGCAAGGAGGTGAAGCGAATGACATTGACATTGACAATTACCTCGGGCCCTGGGCGAAATACGTGGATGAAAAGGACGGTGCCAAACCATCAGAGGTGGAACAGAAGGAGCTGGACGAGATCACAGCCAAGAGGCAGAAGAAGGGAAGGAACGGGGAAGAGGCTCCGGCGGCGGAGAAGACCATTCTCCATGTCAAAGATGCGTACGACTACCAGGGGAGGTCATACCTCCACGTACCCCAAGACGTGGGCATCAACCGGCGTACTGCAGACATCCCAGACAAGTGTTACCTGCCCAAGAAACAGATCCACGTCTGGTCTGGACACACCaagggggTCAGTGCTATCCGTCTGTTTCCTGTGTCAGGTCACCTGCTGCTCTCCTGCTCTATGGACTGTAAGGTCAAGAACTCTGTTGCGGCGGACCGCCACAGTAAAGCAGTGCGGGATATCTGCTTTAACAACACTGGGTCTCAGTACATGAGTGCAGCCTACGACCGCTACCTCAAACTCTGGGACACCGAGACAGGCCAGTGTATCTCCCGCTTCACCAACAGAAAGGTGCCATACTGCGTCAAGTTCAACCCAGATGAAGACAAGCAGAATCTGTTTGTGGCTGGCATGTCTGATAAGATGATTGTTCAGTGGGACGTGAGGACAGGAGAGGTGGTTCAGGAGTATGACCGTCACCTGGGAGCGGTCAACACCATCACATTTGTGGATGAGAACCGCCGTTTCGTCAGCACATCTGACGACAAGTCCCTCCGCGTGTGGGAGTGGGACATTCCCGTGGactTTAAGTACATCGCAGAACCCAGTATGCACTCAATGCCTGCTGTAACACTCTCACCCAATGGTAAGTGGCTGGCCTGCCAGTCCATGGACAACCAAATCCTGATCTTTGGAGCCCAGAACCGTTTCCGTCTGAAcaagaagaagatcttcaaggGCCACATGGTGGCTGGCAATGCCTGCCAGGTGGACTTCTCCCCAGACATGAGCTATGTGGTGTCTGGCGATGCGGATGGGAAGCTTAATATCTGGGACTGGAAGACCACCAAGCTCTATCACCGGATCAAGGCCCACGACAAGGTGTGCATCAGCGCCCTGTTGCTGGGACAGACAGATCAAACTCTGGGACTAGAAACGTGGGGGTGCAGAGGGACTCCCTCTCATAATTTAATGGCAGCTGGTATCCAGTCCTGTTTTAACTCAGTGTATATTTCTACACCATCTGAAGAGGGGACACTGGTGGATTGAACTTTGAACTGGTGATGTTGACAAGCAGCTGTATAcatttgaagttggaagtttacatagacttaggttggagtcattaacttgtttttcaaccactccacaaatgtcttgttaacaaactatagttttggcaagtcggttaagacctctactttgtgcatgacacaagtaatttttccaacaattgtttacaagcAGATTATTTCGCTTATAATTCCACTGGGGCCGaagtttaaaagcacagtcaacttagtgtatgtaaacagctTGAAAAGTTCCAGAaagtgtcatggctttagaagcttctgataggctaattgacataatttgagtcaattgggggtgtacctgtgtaCG

Function

symbol description
cdc40 Predicted to act upstream of or within cell division and mRNA splicing, via spliceosome. Predicted to be part of catalytic step 2 spliceosome. Human ortholog(s) of this gene implicated in pontocerebellar hypoplasia. Orthologous to human CDC40 (cell division cycle 40).

NR:

description
pre-mRNA-processing factor 17-like

GO:

id name namespace
GO:0007049 cell cycle biological_process
GO:0051301 cell division biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036986869.1 True 2370 mRNA 0.48 16 40132191 40164976

Neighbor

gene id symbol gene type direction distance location
slc22a16 LOC106571810 coding downstream 115024 39956961 ~ 40017167 (-)
LOC110531091 NA coding downstream 1078792 39050749 ~ 39053399 (-)
LOC118965515 NA coding downstream 1308146 38822129 ~ 38826089 (-)
LOC110530913 NA coding downstream 1330239 38787513 ~ 38801952 (-)
trnal-uaa-3 NA coding downstream 1691911 38440198 ~ 38440280 (-)
armc2 armc2 coding upstream 473295 40638271 ~ 40669501 (-)
LOC110529912 LOC106571799 coding upstream 559421 40724397 ~ 40779631 (-)
LOC118965517 NA coding upstream 614875 40779851 ~ 40800037 (-)
LOC110529916 LOC106571797 coding upstream 793166 40958142 ~ 40969478 (-)
LOC118965611 NA coding upstream 1560545 41725469 ~ 41728987 (-)
G707234 NA non-coding downstream 28031 40102600 ~ 40104160 (-)
G707168 NA non-coding downstream 107555 40024389 ~ 40024636 (-)
G707129 NA non-coding downstream 210195 39920496 ~ 39921996 (-)
G707140 NA non-coding downstream 224503 39907405 ~ 39907688 (-)
G707137 NA non-coding downstream 229090 39902621 ~ 39903101 (-)
G707316 NA non-coding upstream 99561 40264537 ~ 40269554 (-)
G707362 NA non-coding upstream 175470 40340446 ~ 40340669 (-)
G707366 NA non-coding upstream 181870 40346846 ~ 40347214 (-)
G707374 NA non-coding upstream 192373 40357349 ~ 40357567 (-)
G707408 NA non-coding upstream 259178 40424154 ~ 40424902 (-)
G706683 stxbp5 other downstream 905878 39219644 ~ 39226313 (-)
G704874 NA other downstream 1818388 38313489 ~ 38313803 (-)
G704702 NA other downstream 2093845 38037725 ~ 38038346 (-)
LOC110530908 otof other downstream 2640034 37474229 ~ 37626960 (-)
G709272 NA other upstream 2554795 42719771 ~ 42720699 (-)
G709454 NA other upstream 3005784 43170760 ~ 43171082 (-)
G711133 NA other upstream 4373817 44538793 ~ 44539504 (-)
G712814 NA other upstream 5292801 45457777 ~ 45458248 (-)
crfb16 LOC106568648 other upstream 6146154 46309732 ~ 46325685 (-)

Expression


Co-expression Network