retreg1 (fam134b)


Basic Information

Item Value
gene id retreg1
gene name fam134b
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 45509081 ~ 45601564 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612611.2
AAGCTCAGGCTTCATTGAAGATAAACACTAGCTGGTCTCGCGCTGCGTGGCACGTCAACTGTGTCTTGACTTGACCTGAACGATTTGTAGAGCTTTGCTGTGACAGACAAGTACTTATATCCAGAACCACGTCTTCTTCGGACTACCTTAATATCGTAACAGAACCAAACTAGAGCTCCTAAGATGTCTCCTGAAGACCGTGGGGCAGGAATGAGCTGGGAGATCATTGATGCGGGCCAGGACAGCAGATCTGGAGCTGGGCTACAGGTCACAGACTCCTGGACGAGCTTCAAGCTCTTTCTGCAGGAGACCTCCTCCTTCAAGCAGCAGAATCCAGGCAAGTTTTGCTTGCTGGTCTGCAGTTTGTGCACCTTTTTGGCTGTCTTAGGACGCTACATTCCAGGTGTTCTCATCTTATATGTTTTAGTGCTGGGCGTCTTCCTGTGGCCACTGATGACAGCGCATGACTTTGGGTTGTGGATGAAGCCAGTTCTGCAGAAGCTGGACTTCGGACTGGAAAGATTCCTTCAGAAAATCAGAGAGAATCATGaAAAGAGACTCCTTCTGGCACAAGCTGACCGGGAGAGTATTGAAGCCGATCTGTCCTCCCTTTTCCCCAAGTTGGACTCCACAGTTTGTAAGGAGATGTCGATATCAGATACAGAGGCCTCTGATGTGACGTGGACAGACAACGGAACATTTAACCTGTCTGAGGGACATACGCCCCAGACTGAGAACTCAGATGACCTAGACAGAGAAGAACTATTCATAGGGGGCCTCCCGGAATTCCCCTCCTTGGACAACGGCACCAATGGGGAGGACGATGACGACCTGAGCATCGGCCTACCCACCCCCCCTTCCCAACCCCAGCACAGCAGAGCCAAGGGGGGGTCCGTGCCCCCCCTCCAGGGGGACCCTTCCACCCAGGCCATGGAgtttgtccacaagatggcaggcAATGTCATTGCAGCCGCCGCCACCGCTGTCATTCAGGAGAGGCTGGAGGCCGCCATCGGTAACACCATACCCACAGACCCCCACCCCAGGTCCCTGCTGTTCCCCAACCCCACGACACTGCTGCCCCTGGACCTGGCAGAGGAGTCATCATCGGACAGCGATGTGGAGGAATTTGAGCTGCTGGACCAGTCCGAGCTGGAGCAGCTGGAAGGGGAGCTGGGCCTTGGGGCGAGCGCAGCAGTGGCGGCCAAAGAGCCCAAAAAATCATTGTCTTCTTCCAGTGGCTTCTTTTCAAAACTCCTGGGCCGCCATTgattagagcaggggtgtcaggAGGATGTGGTGCAGGTCTAGTAGGGGGTTAGAGGGTAGAGGGCacgtggagacagagagaggccttGTTTGTGGGGTGGGGAGGTTAGGGGTGCAGAGACTGGGGGTTTTGCGAAACAATATGGTGTTGCATTCTTTTTCCAGTTGTACTAATAATGAATATTCCTGCATTACATGATCAATATGTTCGAGAGCGAGAGGAAGGGAGTGTTCAGCAAGCATGATGCTATATGGAGATTGGAGATGTGGAGTTGTCAGAGATCTGTGTCCGTGTTGGTGTGGTGAGATTGTGACTTTTATTTAACGATTTTCACATCATCAACCTGTAGTAAAGTTATGGGtaggaatggaatggaatgtggTGGTGTTTCTGATTTGCTGCCAAAAGGACTAAATTTGTGTTTTGTTGGTTAATTTCTTCAACAGATGATCAGGTCTATATAATTATCGAACATACATTAGTAATGGAAAGGAAACACAGACTTTTTGTTTAAGTATTAAAATACTAATTTTAGTAATACAATTGTAGGCAGAAGTTGAtgcagagtacagtatatgataGTTCTCCCCAAGTTCTGCAAAGTGTCTAAGAGATCCTGTAACTCATAGCCTCCCCAATCCCCCTTACATAACTTTCCCTAgcaacaacattttaataaatctaACCTCCCCTCTGACAGCAGGAACCATCTTATCAGCAAGTAAAATCTCAGAAGTGGGTTTGACCAAAACTTGACCTTTCATCACAAGTATAGAGTCATAACAATGTGAACGAGTGTAAGCATCTTCTAACAAGGGActggtttcatcaggtctgtggcagccttgtgttctcagaaaaccagAATCACGGTGGGATCCAGATAGGAGTCTGAACGTAGACACCTTCTGATAGTGTCTGAAGGGCACAACACTCAAAACAGGTGTTAACACACACAGAGGTCTCCTGAGGAGACCTTACAATTTATCATAACATCATTTAATGAAACCCTATAAAAGGTATGAGGCCTTGGTTTAACCTTCTTTAGTTTCAAGATTCCTACACTGGCCGATTGGGCCCATTCAACTCCATCACCCATTAATCTACAGTACAGCTTAATTCGACCAGACCTACGACAACAATGACAATCATCTGTGCTAACAATGGAACCAATTGTTCAAACGCATACTGTTTGTGCATATTGGTTCTTACTGCAGCACAAGTAAGGTAACAAATCCTGTAGTTAACTGGAACATGCAACGATGGGATGACAGATAATAGTAAAattatattttgtatattttctttttgtttttctaaTTTTGTATATTGTTCATGAAGCCATAATATAGGTGAGGGACTTCACATTTTACGACATGCAATAGGTCTCACGATATTATGCATGGTAATCTTTTGACCTTTAACGGATGTTCGGTAACACTTTTCTAAAAGAGATATTCCTCTCAAATCTAACATACAACCTTATATTTTGAGTGGAACATCCTTTTAAAGTTCATTGTCTGGGATGCTGACATATGACTGACACAAGAATGTTGTAATTTCTCTTTGAAAATTTTGTGACAAACCATTTATAAGTTCATTGGGCACTGACTTTTTTTCCTGTCAATGTTTCCTTGTCTGGTGACTTTGTCAGGACAAAGTAATTGAACTGAAATAGCACTTGATTCATTCTGCTTGTGAATGTTTCATCAGTTGTCACAAACTAGTGTTATGTCAGTGTTATGGCAGAATCCATGTCAGTCAGGTAGCAGTATTATAATGCTGTTATAGCTCTCTACACTTCAAGCAAAGTGTTGCTCCACATTTTATTTGTACTTGTACCTTATTATTTGACAATGCACTTGGGACATAATCACTTAGTAGTGACAGTTTTAAACTTCATGCAAACAGAATGCAAGATCTCTTTCGTTGGACATGAAAGATTCACCATAACAGCTTGCACGGTACATTATTGAGGTTGTCTGTCGATCGCAAAGAGGTAAAAAATTCACCCCAAAATGTTTAGGTGGGGATATGCAGCTGCAAGTTGCCATTGTTACTGTGTAATTTGTTTGAAGTTAATGTTCGCCTTCTTGAGTAAAGTTGAAGGGCTAACTGAGCTCAATATGTCATAAGGAATTGACCAGGCCCACAAATTGGGGAAAACAAACATTATTTCCTATTGACCCCCATTGTAAAAGAGCCAACTTCGTCATAGATTTTTTGTTGTGCCGAAAAGCTGTAACCAGGTCAAAAATCCGGACCTACGGTTCGCAATGCTCCCATGTAGGAAAATAGAGCCTGGGAGAAGAGCCCTTTGGCTTCAGGCTATTCGGCATCGGAGAGTGGGAAATTGTGGGGACCCGGTGTCAAAGTAGGCTACACGTAGctatgtgtgtggaaaacatttaaTGACAGATAAAGACATTTAACTTGATTAGTATAGTCTGTTTGTAgctacttgtagctgtatagtccaTTTGTTTGCGTTTTTGGTATTGGCTAGCTTAATGTTTCGgtcgtagctagctagcactcactcTCACGTGGCTGCTAGCACCATAATGAAAAGGGGCATGAAGGAATTCCTTTAATATGCTCTTCTAAGTAGTGAGAATGCTCGGGAGCAGGCAATGTTAAAAATGAATCTTTAGACAtacttttcttaaatgtagttttgtaattgactGAAACAAGCAGACAACAAGAGAAAGGTCAAGTTGTTGCTGTGAGCCAatggggtaacctaggtaaccacagTTTTTTTTTGCCAACGGGCAGGCAGGGCCTGCTGCGTTCTATCTAATACCGActgggactatccaaataaaataataaaagttATCAGACCAGGCTTGTTTTTCCGATGATTGACAAGGGTAGGAGGTACATCCTGggggaaaatatatttcatattgcGCAACACTTAATTCATTATTGAATATGCCAATAATAAACCCCTGTGCTAAAAACAAGATTGACAACGTGTAATAACCATTAGTTCTTGATTCTCCATCATTATAGCCTGCCTTTTTCTAAATATATGCTATTACTGTCAAGACAAATATATGCATTTTACACCACAGAAAATGAACATATAGCATATAATCAGGAGTTTAAACAAGCCATTTATTGATTAACAATAGCCATGAGTTATTATGCATTCTGTTCGCTATCATGTCAAATCATGGCAGTATGTGATTGCCTTACAGTGACAAATCCACTGAACTGTGTCTTCTTTAAACTGCTCAATAGTTTCTTCACATTAGAAAGATCATCTTACACACTTGTGAGTTGTTAGTTATTTGTCTGAAGTGAAGCATAAGCAAAATGTAGTTGTATGTAAATGATCAAGAATATTATTAATAAAGTGTGAAAATGTAA
>XM_021612610.2
TGAACATCACTTTATTTTTGGTAGCActatgctgttgttgttgttgtcagctAACCAGCATAAACTATATGGGAAGGGTTTATCAGAACGACTTGACTGAACCGAATACATTAGTCTCCACACTTGACTCAGATGCGCGACATACGTCATCCATTTGGGCACCAGGCGAGTCCATATAGCCTCTCCCACGTCAGAATCGACACGAGGATGCTGCGGTAGTGGCGGGGCCGGAGGTTGCAGCCGTGAGTCTGGCCAGGGCTAGACACTCAGGTGGGGCGATGGCGGCGGCTGGGCACGAGGAAGAGCAGGCTGTTATAGCGGACTGTCGCATTTCAAACGTGATCAACTGGAATAAACCTTTTAGGACCACGACACTCTTTGCTGCCACCACTGCTGTGTACTGGTTTGTGGCCCTCAATTCCTATAGAGCGTACTGTCTTCTTGCCCTTTCCTTGGCTCTGATGGGGACAGTGCTGCTTGTTAAAGATGTGGCTCTCTCCAGATGTGTCTCTTTCTCTAAAGGGGCCCACTTATGGAGCAGTATGACTGTAAGCTGGGAGATCATTGATGCGGGCCAGGACAGCAGATCTGGAGCTGGGCTACAGGTCACAGACTCCTGGACGAGCTTCAAGCTCTTTCTGCAGGAGACCTCCTCCTTCAAGCAGCAGAATCCAGGCAAGTTTTGCTTGCTGGTCTGCAGTTTGTGCACCTTTTTGGCTGTCTTAGGACGCTACATTCCAGGTGTTCTCATCTTATATGTTTTAGTGCTGGGCGTCTTCCTGTGGCCACTGATGACAGCGCATGACTTTGGGTTGTGGATGAAGCCAGTTCTGCAGAAGCTGGACTTCGGACTGGAAAGATTCCTTCAGAAAATCAGAGAGAATCATGaAAAGAGACTCCTTCTGGCACAAGCTGACCGGGAGAGTATTGAAGCCGATCTGTCCTCCCTTTTCCCCAAGTTGGACTCCACAGTTTGTAAGGAGATGTCGATATCAGATACAGAGGCCTCTGATGTGACGTGGACAGACAACGGAACATTTAACCTGTCTGAGGGACATACGCCCCAGACTGAGAACTCAGATGACCTAGACAGAGAAGAACTATTCATAGGGGGCCTCCCGGAATTCCCCTCCTTGGACAACGGCACCAATGGGGAGGACGATGACGACCTGAGCATCGGCCTACCCACCCCCCCTTCCCAACCCCAGCACAGCAGAGCCAAGGGGGGGTCCGTGCCCCCCCTCCAGGGGGACCCTTCCACCCAGGCCATGGAgtttgtccacaagatggcaggcAATGTCATTGCAGCCGCCGCCACCGCTGTCATTCAGGAGAGGCTGGAGGCCGCCATCGGTAACACCATACCCACAGACCCCCACCCCAGGTCCCTGCTGTTCCCCAACCCCACGACACTGCTGCCCCTGGACCTGGCAGAGGAGTCATCATCGGACAGCGATGTGGAGGAATTTGAGCTGCTGGACCAGTCCGAGCTGGAGCAGCTGGAAGGGGAGCTGGGCCTTGGGGCGAGCGCAGCAGTGGCGGCCAAAGAGCCCAAAAAATCATTGTCTTCTTCCAGTGGCTTCTTTTCAAAACTCCTGGGCCGCCATTgattagagcaggggtgtcaggAGGATGTGGTGCAGGTCTAGTAGGGGGTTAGAGGGTAGAGGGCacgtggagacagagagaggccttGTTTGTGGGGTGGGGAGGTTAGGGGTGCAGAGACTGGGGGTTTTGCGAAACAATATGGTGTTGCATTCTTTTTCCAGTTGTACTAATAATGAATATTCCTGCATTACATGATCAATATGTTCGAGAGCGAGAGGAAGGGAGTGTTCAGCAAGCATGATGCTATATGGAGATTGGAGATGTGGAGTTGTCAGAGATCTGTGTCCGTGTTGGTGTGGTGAGATTGTGACTTTTATTTAACGATTTTCACATCATCAACCTGTAGTAAAGTTATGGGtaggaatggaatggaatgtggTGGTGTTTCTGATTTGCTGCCAAAAGGACTAAATTTGTGTTTTGTTGGTTAATTTCTTCAACAGATGATCAGGTCTATATAATTATCGAACATACATTAGTAATGGAAAGGAAACACAGACTTTTTGTTTAAGTATTAAAATACTAATTTTAGTAATACAATTGTAGGCAGAAGTTGAtgcagagtacagtatatgataGTTCTCCCCAAGTTCTGCAAAGTGTCTAAGAGATCCTGTAACTCATAGCCTCCCCAATCCCCCTTACATAACTTTCCCTAgcaacaacattttaataaatctaACCTCCCCTCTGACAGCAGGAACCATCTTATCAGCAAGTAAAATCTCAGAAGTGGGTTTGACCAAAACTTGACCTTTCATCACAAGTATAGAGTCATAACAATGTGAACGAGTGTAAGCATCTTCTAACAAGGGActggtttcatcaggtctgtggcagccttgtgttctcagaaaaccagAATCACGGTGGGATCCAGATAGGAGTCTGAACGTAGACACCTTCTGATAGTGTCTGAAGGGCACAACACTCAAAACAGGTGTTAACACACACAGAGGTCTCCTGAGGAGACCTTACAATTTATCATAACATCATTTAATGAAACCCTATAAAAGGTATGAGGCCTTGGTTTAACCTTCTTTAGTTTCAAGATTCCTACACTGGCCGATTGGGCCCATTCAACTCCATCACCCATTAATCTACAGTACAGCTTAATTCGACCAGACCTACGACAACAATGACAATCATCTGTGCTAACAATGGAACCAATTGTTCAAACGCATACTGTTTGTGCATATTGGTTCTTACTGCAGCACAAGTAAGGTAACAAATCCTGTAGTTAACTGGAACATGCAACGATGGGATGACAGATAATAGTAAAattatattttgtatattttctttttgtttttctaaTTTTGTATATTGTTCATGAAGCCATAATATAGGTGAGGGACTTCACATTTTACGACATGCAATAGGTCTCACGATATTATGCATGGTAATCTTTTGACCTTTAACGGATGTTCGGTAACACTTTTCTAAAAGAGATATTCCTCTCAAATCTAACATACAACCTTATATTTTGAGTGGAACATCCTTTTAAAGTTCATTGTCTGGGATGCTGACATATGACTGACACAAGAATGTTGTAATTTCTCTTTGAAAATTTTGTGACAAACCATTTATAAGTTCATTGGGCACTGACTTTTTTTCCTGTCAATGTTTCCTTGTCTGGTGACTTTGTCAGGACAAAGTAATTGAACTGAAATAGCACTTGATTCATTCTGCTTGTGAATGTTTCATCAGTTGTCACAAACTAGTGTTATGTCAGTGTTATGGCAGAATCCATGTCAGTCAGGTAGCAGTATTATAATGCTGTTATAGCTCTCTACACTTCAAGCAAAGTGTTGCTCCACATTTTATTTGTACTTGTACCTTATTATTTGACAATGCACTTGGGACATAATCACTTAGTAGTGACAGTTTTAAACTTCATGCAAACAGAATGCAAGATCTCTTTCGTTGGACATGAAAGATTCACCATAACAGCTTGCACGGTACATTATTGAGGTTGTCTGTCGATCGCAAAGAGGTAAAAAATTCACCCCAAAATGTTTAGGTGGGGATATGCAGCTGCAAGTTGCCATTGTTACTGTGTAATTTGTTTGAAGTTAATGTTCGCCTTCTTGAGTAAAGTTGAAGGGCTAACTGAGCTCAATATGTCATAAGGAATTGACCAGGCCCACAAATTGGGGAAAACAAACATTATTTCCTATTGACCCCCATTGTAAAAGAGCCAACTTCGTCATAGATTTTTTGTTGTGCCGAAAAGCTGTAACCAGGTCAAAAATCCGGACCTACGGTTCGCAATGCTCCCATGTAGGAAAATAGAGCCTGGGAGAAGAGCCCTTTGGCTTCAGGCTATTCGGCATCGGAGAGTGGGAAATTGTGGGGACCCGGTGTCAAAGTAGGCTACACGTAGctatgtgtgtggaaaacatttaaTGACAGATAAAGACATTTAACTTGATTAGTATAGTCTGTTTGTAgctacttgtagctgtatagtccaTTTGTTTGCGTTTTTGGTATTGGCTAGCTTAATGTTTCGgtcgtagctagctagcactcactcTCACGTGGCTGCTAGCACCATAATGAAAAGGGGCATGAAGGAATTCCTTTAATATGCTCTTCTAAGTAGTGAGAATGCTCGGGAGCAGGCAATGTTAAAAATGAATCTTTAGACAtacttttcttaaatgtagttttgtaattgactGAAACAAGCAGACAACAAGAGAAAGGTCAAGTTGTTGCTGTGAGCCAatggggtaacctaggtaaccacagTTTTTTTTTGCCAACGGGCAGGCAGGGCCTGCTGCGTTCTATCTAATACCGActgggactatccaaataaaataataaaagttATCAGACCAGGCTTGTTTTTCCGATGATTGACAAGGGTAGGAGGTACATCCTGggggaaaatatatttcatattgcGCAACACTTAATTCATTATTGAATATGCCAATAATAAACCCCTGTGCTAAAAACAAGATTGACAACGTGTAATAACCATTAGTTCTTGATTCTCCATCATTATAGCCTGCCTTTTTCTAAATATATGCTATTACTGTCAAGACAAATATATGCATTTTACACCACAGAAAATGAACATATAGCATATAATCAGGAGTTTAAACAAGCCATTTATTGATTAACAATAGCCATGAGTTATTATGCATTCTGTTCGCTATCATGTCAAATCATGGCAGTATGTGATTGCCTTACAGTGACAAATCCACTGAACTGTGTCTTCTTTAAACTGCTCAATAGTTTCTTCACATTAGAAAGATCATCTTACACACTTGTGAGTTGTTAGTTATTTGTCTGAAGTGAAGCATAAGCAAAATGTAGTTGTATGTAAATGATCAAGAATATTATTAATAAAGTGTGAAAATGTAA

Function

NR:

description
reticulophagy receptor FAM134B isoform X1

GO: NA

KEGG:

id description
K23880 RETREG; reticulophagy regulator

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612611.2 False 4654 mRNA 0.43 7 45509081 45546117
XM_021612610.2 True 4992 mRNA 0.44 9 45509081 45601564

Neighbor

gene id symbol gene type direction distance location
znf622 znf622 coding downstream 13980 45485018 ~ 45495101 (-)
basp1 NA coding downstream 335340 45122083 ~ 45173741 (-)
LOC110529115 NA coding downstream 524813 44980969 ~ 44984268 (-)
efr3a efr3a coding downstream 1072522 44184993 ~ 44436559 (-)
LOC110529930 NA coding downstream 1114442 44390878 ~ 44394639 (-)
nol7 nol7 coding upstream 77295 45678859 ~ 45684992 (-)
amph amph coding upstream 191684 45793248 ~ 45924730 (-)
tmem71 tmem71 coding upstream 404847 46006411 ~ 46033000 (-)
ift57 ift57 coding upstream 460179 46061743 ~ 46074046 (-)
cavin4a LOC106568643 coding upstream 521180 46122744 ~ 46133988 (-)
G712815 NA non-coding downstream 46460 45459133 ~ 45462621 (-)
G712812 myo10 non-coding downstream 52554 45455909 ~ 45456527 (-)
G712810 myo10 non-coding downstream 55765 45453032 ~ 45453316 (-)
G712809 NA non-coding downstream 56647 45452208 ~ 45452434 (-)
G712806 NA non-coding downstream 59220 45449595 ~ 45449861 (-)
G712949 NA non-coding upstream 55612 45657176 ~ 45711563 (-)
G712967 NA non-coding upstream 110531 45712095 ~ 45712403 (-)
G712968 NA non-coding upstream 111052 45712616 ~ 45712839 (-)
G712969 NA non-coding upstream 111982 45713546 ~ 45713820 (-)
G712972 NA non-coding upstream 116101 45717665 ~ 45717876 (-)
G712814 NA other downstream 50833 45457777 ~ 45458248 (-)
G711133 NA other downstream 969577 44538793 ~ 44539504 (-)
G709454 NA other downstream 2337999 43170760 ~ 43171082 (-)
G709272 NA other downstream 2788382 42719771 ~ 42720699 (-)
slc22a16 LOC106571810 other downstream 5549468 39956961 ~ 40017167 (-)
crfb16 LOC106568648 other upstream 709566 46309732 ~ 46325685 (-)
LOC110529973 LOC106568664 other upstream 1449903 47051073 ~ 47067973 (-)
G714425 LOC106568665 other upstream 1576860 47178424 ~ 47178736 (-)
G715865 NA other upstream 2687378 48288942 ~ 48289581 (-)
dlg1l LOC106568684 other upstream 2940727 48356004 ~ 48616588 (-)

Expression


Co-expression Network