LOC110530002 (LOC106568700)


Basic Information

Item Value
gene id LOC110530002
gene name LOC106568700
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 49524738 ~ 49529686 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612751.2
TAGAAAATTTTCGAAATTCTGTGACCGGAAATGTTTTATTATTGTTGCTGACGAGACGCTGATAAAGATTTGTTACTTATTATTCTCAGACGGGGTAGCTACGAACAACGACATAGAAACCATCGTGGTGAAAATAAGGTTTCCCCCCAAGATCACAGGTCCATCTGAAAAGAGCCAGGTTGAGAGAATAGAAGGAAAGGAGATTTAAATGGAGGTGGAAGAGGCAACCAAGTCTGAAGAAGTGCAGGTGGATGCGGCTGGCAGCGAAGAGAAGTCAGATGACGCTTTGTCTAATGGTAGCCACACAACCCCTAAGAGAAGCAGGGGTAGGCCCCCCAAAAACCGACCCGTCTCTGAATCAGATCAAGCCGTATCCAACGGTAGCTCCACAACACCTAAGAGGGAACGGGGTAGGCCCAAAAGACCAGTCACCGAGAAGGGAAGAGGTAGGCCAAGTGGAGCCTTGTCTAATAGTAGCACCACAACACCTGAAAAAGGTCAGCCAAAAGGATCAACCTCCAGGTTAGGTGCTAGCCACATAACACCTAAGAGAAGTGTCAAAGGATCAGTGTTCACAAAACCCAAGATGCTGATGGTTATAGGCAAGCCGTCGCAAGGCCAACCCAGTAAAGTGGTTGACCCCTCCCCTAAGAAGTGTGGCCGGCCCTTTAAAGTTAAATCAAAAAGGGGTAGGCCAAAGAAGATCCTAACACCCGAGGAAGAACAGGAGAGAAAGAAACTGGAAAGTCAGCCAAGTGTGTTGAAGCCACTTGGAAGGCCACGCATCTATCCCCGCAATGACCCACCAGTCACTGAGCCTAGAGGAAGAGGCCGCCCATGCAAGTCTGAGGACAAAAGGGGTGCTCACTTGCGGAAACCCCCCAATCCCCCCATCTATGATGGTCCCCCACGGAAACGGGGCCGTCCCCCTAGTGCAGCAAACAAAGATAAGATCGAGGCAGAACAAGATGAGGCCAACAGTGAACCTCCAGTCAAACAATCCTGCAACTCCAATGAAAAAAGCGAGGAAGGATTTCCTCCAGTCGAAGAGGACAGTGAAACGGGAAAGGTGAACTGAGGAAAGTGAAACCAGAAAGGGGAATGGAGAAAAGCGGATGAATATACAGAAGACACCAAGAAGCCAGTTACCCCCAGTGACGGCAGTAGCTTTCTTGGGGCCATAAGCAGGATGTTTGGCGACAGCCCGACCAGAGCAAGTACTCCCCACTTCATAGCTGCCCTGTTTTTCCAGTATAATTGCTGATATGAGATCATCTGATAATGCAGTTTTATATTGGGGTGATCTCAGTTATGAATATAGATAATGCACTTTCGCTTGTCTGATTGCATTCTTCACCTTTATGGGGTTAAAATGGTTAGCCTTATTGTTGACCTGGACCATGCAACTTCCAAttctttctctgcattgttgggaagggcccacaAGTAAGCATGTCACTTAGTTAGTCTATGCCTGTTTATGAAGCGTGTGACAAATGCATTTGATTTGAACCCAACGTCTCTCAAATTtctacatttaaaatgtacaGTTTCACAACTTGAGGGGTTTGTTCACCAATTGAATCCTTGTAGTTTGCTTATCAATGTTACTCCTCAGATCATTTTATGATTTagacttaagtagtttttttttttgttgactgTCAGTCCTGATCACTAGGCCTACTTTGACATAACCAGTGGAGTAACATTTTAAAACAGGACAGCTTGTGAGATTTTTTAGATTTGAGTCTTTTCAATAATTTTCTTTTGACATTTTAATGTGTTCATTGTCATTAAAATCTGGTTGATTACAAAAATGTTATAGTTGTGGATGACTTGGTTTCACAGACCCTGGACAAATGTTATACACGTTTTAGGCTACATGTATTGGGCTATATCATGAACTCTTGACCATTTGAAATTTGAGTATAAATGCATTCCTTTATGTATCCACCTGTCAATTTAAACTCTGCCACTGACCGACTGCATTATACAGTGgcaaagtatgtgaaccctttggaattacctggatttctgcataaattggtcataaaatgtgatctgatcttcatccaaCAATAGACTGCTTAAAACACAATTTCTCATGACTTTATTTTcacacaccatgtaaacattcacagtgcagggtgggaaagtatgtgaacccttggatttaataactggttgactcttttggcagcaataacctcgaCCAAACggtttctgtagttgtggatcagacctgcacaacagttAGGAGAAATTATGGATCATTCCTCTTTaaaaaaactgtttcagttcagcaatattcttgggtgTGAACCGCTCTTGAGATCATGGCACAGCATCTCAaccgggttgaggtcagggtgtATTTTTTTCTGTTTAAACAATTCTGTTGATTTAcctgttttgggtcgttgtccttttgCATTACCCAACTTCtgttggcggacagatagccttacattctctgTCAAAATGTCCAACTTGGGAATACATTTTTCCATCAATGAtcgcaagctgtccaggccctgaggcaggaaagcagccccaaacccagtccctccaccatactttacaggaTGAGGTTTGATGTTGGTGTtgtgccttttttctccacaTAGTGTTATGTTCcgtccaaacaactcaactttagtttaatctgttcACCGAATATTtagccagtagcgctgtggaacatccaagTGCTCTTTTGTTAACTTCAGACATgttgcaatgttttttttttggacagcagtggctttttccaTGGTATCCACCCATTAACACCATTTTAGTTTAGTGTTTCACGGATTGTAGACTCGGCAGAGTTGTTAGCATGTCCCAGGGATTTCTGTAAGTATTTAGCTGACACACTAgtattcttcttaacctcattgagtattctgcactgtgctcttgcagtcatctttgcaggactgccactcctagggagagtagtaagtgctgaactttctccatttatagacaatgtcTTACCTTGGACTGATGATCAAGGCTctgagatacttttgtaacccattccagctttatgcaagtcaacgaTTCTTAATCTTTTGAGAGCTATTGTTCAAGCTATGGTTAACATCAGTCaattcttgtgaatagcaaaacTCCAATTGTGAGGTAAATTTTTAatagggcagctctaaccaacatctccaatctcgtctcattgattggactccagtttAGCCGAcgcctgactccaattagcttttgaagtctttagcctaggggttcacatactttttccaacctacactgaatgtttaaatgtatttttcttgtctctATTGAATACAATATTTTGTGTTAGTTTAAGCACGTGTTTGTCTTGACTTAAGTGAATAGAtacaatttatgcagaaatccaggtaattccaaagggttcacatactttctctTGCCACTGTATAGTCTAGAGGAAATCTATTGAGATACTGTATCTTCCAATATTGTACATCAATCCACTGTACATTTCACATTTGTTTATTCATCCTTTTTACTATGTTTTTGCTTATAGCTGTATTAATTTACTTTAGTTTGCTCCTCAATTCATGCACCTTGGTTGGAGTGAGTTCCCTTCATATTGCAATAATACTGTACCAAAAGTGACATTTGGGTAGTGCAATCTGCCATGTTCTAAATCGGGCTAATTCTTGTCACTGAGTTTTAATCAAGTAGGCCTAATTTTAGTAGAGCAATGCATTTGTTTTTAATTTGGTCTTTTCTCATACAGCTTTGTAGCTTGAGCCCATCTTTCAAATCCTAAATGACCCATGTCAGCAGTTCTGGTAGGTCCGTGATTGTCTAGGTTGAGGGGAATTTCTGATTAATCCAGAACAAGGTCTGTGAAACCACTGAAGGTAACATGAATGAGTTGTTTTCAGAGTGTGTAAATTGTAAGTTTACTGCAATAAAATGTCAAACTTTATTACAGGTGGTTTTTAAATGTCAATAAAGCTTAGTCTTATTTAGTA

Function

NR:

description
chromosomal protein D1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612751.2 True 4010 mRNA 0.41 2 49524738 49529686

Neighbor

gene id symbol gene type direction distance location
LOC110529999 LOC106568697 coding downstream 33490 49442708 ~ 49491248 (-)
LOC118965653 NA coding downstream 127885 49396799 ~ 49396853 (-)
LOC110529994 LOC106568693 coding downstream 384026 49122049 ~ 49140712 (-)
dlg1l LOC106568684 coding downstream 908150 48356004 ~ 48616588 (-)
LOC118965521 NA coding downstream 988112 48531522 ~ 48536626 (-)
LOC118965614 NA coding upstream 47417 49577103 ~ 49578807 (-)
LOC110530004 LOC106568703 coding upstream 71853 49601539 ~ 49612229 (-)
LOC110530005 NA coding upstream 99891 49629577 ~ 49630769 (-)
LOC110530006 LOC106568704 coding upstream 105789 49635475 ~ 49647848 (-)
zgc:110269 LOC106568705 coding upstream 118247 49647933 ~ 49655158 (-)
G717532 NA non-coding downstream 2805 49521606 ~ 49521933 (-)
G717531 NA non-coding downstream 4240 49520154 ~ 49520498 (-)
G717528 NA non-coding downstream 7755 49516700 ~ 49516983 (-)
G717527 NA non-coding downstream 10216 49513075 ~ 49514522 (-)
G717534 NA non-coding upstream 2301 49531987 ~ 49532535 (-)
G717539 NA non-coding upstream 13525 49543211 ~ 49544233 (-)
G717540 NA non-coding upstream 15112 49544798 ~ 49545015 (-)
G717542 NA non-coding upstream 16946 49546632 ~ 49546884 (-)
G717543 NA non-coding upstream 17987 49547673 ~ 49547973 (-)
G716488 NA other downstream 735776 48788521 ~ 48788962 (-)
G716480 tnk2 other downstream 742223 48782121 ~ 48782515 (-)
G716463 LOC106591423 other downstream 763575 48759912 ~ 48761163 (-)
G715865 NA other downstream 1235157 48288942 ~ 48289581 (-)
G718489 NA other upstream 255988 49785674 ~ 49837696 (-)
LOC110530011 LOC106568709 other upstream 336944 49866272 ~ 49937001 (-)
G719151 NA other upstream 1407242 50936928 ~ 50939471 (-)
LOC110530043 LOC106568739 other upstream 1722669 51252355 ~ 51259061 (-)
G721275 NA other upstream 3231353 52761039 ~ 52761451 (-)

Expression


Co-expression Network