zgc:110269 (LOC106568705)


Basic Information

Item Value
gene id zgc:110269
gene name LOC106568705
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 49647933 ~ 49655158 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612759.2
TGTCATTTCTAACTTCTAAATTGAGAAGCTTACCCAACCGTTGGCATTGTTGACAGCACCTCAAATGTGGCTTCTCCCTCCTTCATCGGCACTGATCTAAAATCACAGGATAGGGGAAAGCATATGGTGAATGTCTACCAGTTATTTACTGTCATCTGTCCAATTCTTTCCAGCCAGTGCAGATGAATCCCTTGACAGGTTTGTTCTTTCGAACGCTAACCTTCCTGGAGCATGACATCAAACCATTGTTTGTGTTCGATGGGAAGCCTCCTGGAGAGAAAAGGGCTGTGTTGGAGAAGAGGGCACAGGTTGCAGGCTGGAGCTCCCCCAGTCATTCAGGAGCAGTGTCCCCTCAGACACGGGACTGTCTCCACCTTCTGAAGCTTATGGGTGTGCCCATCATCCAGGCTCCAGGAGATGGCGAGGCACTATGTGCCCACCTGGTGAAACAGGGCACAGTAGACGCGGTAGCATCAGAAGACATGGACACTTTGCCCTTTGGTGGAAACATTCTGATCCGCCAGCTCAATGCCAAGAAAAACAGCGAAGTCATTGAGTACTCTCTGCCCAAGCTGCTAGACATTTTGAAGATAACACATGATGAGTTTGTGGACCTGTGTATCTTGTTGGGCTGTGACTACTGTGACAAAATCACAGGCCTTGGACCTAAGAGAGCTCTGACTCTGATCCAGCAGCACCGGAACATAGAGAACGTGGTGCTGAACATCAACAGAAAGACCCACCCTGTCCCACTGTTCTGGCAGTATCAGGATGCCCGCAAGCTGTTTTTGGATGCACCCCTGACCGAGCTACCGAACCTGGTCTGGACTGAGCCAGATGAGGAGGCCCTGGTCCACTTTCTGTGCCATGAGAAACACATCAagGAGCAAAGAGTACGTGGTCGAATGCAGAAGTTCAGTGAGAAGCGTGAAcgcctgaggaaggagagggaggaggacaaggCAGCAGGACAGAGCCGACAAACTCGCATGGAGGACTTCTTCCGTGTTACACGGAAAAGGCAACAGCCGTCTGAAACTGGGGATTCCATTGGCACCAAAGAAAAGAGAGCGAGGCCAAAGTGACACTGCCCTCCGACGGAGTCTGGTGGTACTGCAAATGCATCCTTACCAACCAGCTGTCTGACAGTTAAAAGGATGTGCTTGTTCATGAGGGTCTACCTGAGAAAGGAGCTGTGCAGATCAACTGATCTATACATTTCATTAACTTCCTAACGATTGAGCATAAACCAATTCTTATTATGTAAAGATTTGTGACAGAGAGTACCTcggggtcgtgttcattaggcaccaccTTGAAACAGGGGGCAGACTACCTGGGCATATCCAATAAGTAATGCTCATATTCGTTTTCTGTTTTAAAAACGTgcccctaatgaacatgaccagGGCAACTCCTAGGGAGCAAGTAAACAGGATGAGCAGAGGCGGAGACTCATTGGCGAGAACAGTGCAACCACTGTCTGTGGGGCCTTGGCTTGCTTGTTCCCTCATCCAAAACAGGAGCCGATTGATTTCTATGGAGGAAGGTCAGATGGGCTCATGGCTTATTTGGTGGACACCTGCTACCCTCAACAGTGCCAAATTTGAGGCAAAGGACTTTCTTATCTTGATAAACATGATCATGTCAAAGTAGAGACCAAAATATGATAATCTCTTGTATCTGTCTTTTTACACAAGATGTCAGAATGATGGTATTTACTATTAAACTTTTATTCATCAA
>XM_021612758.2
CTCTCTCCATTTGTTTGATCCCTCCTGCCCCTATTGGTAGATTCGTGTAGCAACAACAAAGCAGGTTTCCGGGTGTACAGCATCACCAAAACTGTGTATCTAATTTGTTGGCTTTATAACTAACTGTCAGACAAGCACAATGGGTATTACAAAACTGGCAGATTTGATTCGTAGCGATGCACCTGGTGCCATTTCTTACAAAGAGATCTGCGACTACACAGGAAAGGTCATTGCGTTGGACACCTCCATTGTTCTGAACCAGTTCCGCACTGCAGTACCAAATCTTCGGTTACTGGGTCCCTTGACAGGTTTGTTCTTTCGAACGCTAACCTTCCTGGAGCATGACATCAAACCATTGTTTGTGTTCGATGGGAAGCCTCCTGGAGAGAAAAGGGCTGTGTTGGAGAAGAGGGCACAGGTTGCAGGCTGGAGCTCCCCCAGTCATTCAGGAGCAGTGTCCCCTCAGACACGGGACTGTCTCCACCTTCTGAAGCTTATGGGTGTGCCCATCATCCAGGCTCCAGGAGATGGCGAGGCACTATGTGCCCACCTGGTGAAACAGGGCACAGTAGACGCGGTAGCATCAGAAGACATGGACACTTTGCCCTTTGGTGGAAACATTCTGATCCGCCAGCTCAATGCCAAGAAAAACAGCGAAGTCATTGAGTACTCTCTGCCCAAGCTGCTAGACATTTTGAAGATAACACATGATGAGTTTGTGGACCTGTGTATCTTGTTGGGCTGTGACTACTGTGACAAAATCACAGGCCTTGGACCTAAGAGAGCTCTGACTCTGATCCAGCAGCACCGGAACATAGAGAACGTGGTGCTGAACATCAACAGAAAGACCCACCCTGTCCCACTGTTCTGGCAGTATCAGGATGCCCGCAAGCTGTTTTTGGATGCACCCCTGACCGAGCTACCGAACCTGGTCTGGACTGAGCCAGATGAGGAGGCCCTGGTCCACTTTCTGTGCCATGAGAAACACATCAagGAGCAAAGAGTACGTGGTCGAATGCAGAAGTTCAGTGAGAAGCGTGAAcgcctgaggaaggagagggaggaggacaaggCAGCAGGACAGAGCCGACAAACTCGCATGGAGGACTTCTTCCGTGTTACACGGAAAAGGCAACAGCCGTCTGAAACTGGGGATTCCATTGGCACCAAAGAAAAGAGAGCGAGGCCAAAGTGACACTGCCCTCCGACGGAGTCTGGTGGTACTGCAAATGCATCCTTACCAACCAGCTGTCTGACAGTTAAAAGGATGTGCTTGTTCATGAGGGTCTACCTGAGAAAGGAGCTGTGCAGATCAACTGATCTATACATTTCATTAACTTCCTAACGATTGAGCATAAACCAATTCTTATTATGTAAAGATTTGTGACAGAGAGTACCTcggggtcgtgttcattaggcaccaccTTGAAACAGGGGGCAGACTACCTGGGCATATCCAATAAGTAATGCTCATATTCGTTTTCTGTTTTAAAAACGTgcccctaatgaacatgaccagGGCAACTCCTAGGGAGCAAGTAAACAGGATGAGCAGAGGCGGAGACTCATTGGCGAGAACAGTGCAACCACTGTCTGTGGGGCCTTGGCTTGCTTGTTCCCTCATCCAAAACAGGAGCCGATTGATTTCTATGGAGGAAGGTCAGATGGGCTCATGGCTTATTTGGTGGACACCTGCTACCCTCAACAGTGCCAAATTTGAGGCAAAGGACTTTCTTATCTTGATAAACATGATCATGTCAAAGTAGAGACCAAAATATGATAATCTCTTGTATCTGTCTTTTTACACAAGATGTCAGAATGATGGTATTTACTATTAAACTTTTATTCATCAA

Function

NR:

description
probable flap endonuclease 1 homolog isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612759.2 False 1743 mRNA 0.48 10 49647933 49654537
XM_021612758.2 True 1853 mRNA 0.48 11 49647933 49655158

Neighbor

gene id symbol gene type direction distance location
LOC110530006 LOC106568704 coding downstream 85 49635475 ~ 49647848 (-)
LOC110530005 NA coding downstream 17164 49629577 ~ 49630769 (-)
LOC110530004 LOC106568703 coding downstream 35704 49601539 ~ 49612229 (-)
LOC118965614 NA coding downstream 69126 49577103 ~ 49578807 (-)
LOC110530002 LOC106568700 coding downstream 118247 49524738 ~ 49529686 (-)
LOC110530011 LOC106568709 coding upstream 211114 49866272 ~ 49937001 (-)
LOC118965522 NA coding upstream 226485 49881643 ~ 49886226 (-)
LOC110530012 LOC106568711 coding upstream 309756 49964914 ~ 49970082 (-)
LOC118965625 NA coding upstream 328231 49983389 ~ 49986205 (-)
LOC110530015 LOC106568800 coding upstream 438339 50093497 ~ 50095929 (-)
G717525 NA non-coding downstream 54189 49591230 ~ 49593744 (-)
G717565 NA non-coding downstream 73835 49573848 ~ 49574098 (-)
G717560 NA non-coding downstream 80357 49567369 ~ 49567576 (-)
G717617 NA non-coding upstream 12578 49667736 ~ 49672776 (-)
G717622 NA non-coding upstream 23059 49678217 ~ 49683069 (-)
G718461 LOC106568706 non-coding upstream 86627 49741785 ~ 49742817 (-)
G718537 NA non-coding upstream 195083 49850241 ~ 49850528 (-)
G718541 NA non-coding upstream 199946 49855104 ~ 49855399 (-)
G716488 NA other downstream 858971 48788521 ~ 48788962 (-)
G716480 tnk2 other downstream 865418 48782121 ~ 48782515 (-)
G716463 LOC106591423 other downstream 886770 48759912 ~ 48761163 (-)
dlg1l LOC106568684 other downstream 1031410 48356004 ~ 48616588 (-)
G715865 NA other downstream 1358352 48288942 ~ 48289581 (-)
G718489 NA other upstream 130516 49785674 ~ 49837696 (-)
G719151 NA other upstream 1281770 50936928 ~ 50939471 (-)
LOC110530043 LOC106568739 other upstream 1597197 51252355 ~ 51259061 (-)
G721275 NA other upstream 3105881 52761039 ~ 52761451 (-)

Expression


Co-expression Network