LOC118965522


Basic Information

Item Value
gene id LOC118965522
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 49881643 ~ 49886226 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005052889.1
tatggagtggttgaaaaacgagttttaatgactccaacctaagtgtatgtaaacttccgaattcaactgtacatGCCCACTTTTGCCGATGATGCCCAATTGCCCAGAGACAACACATTGTGGTCTTTCCCCAGCTGCCATGTGGACATTTGTTGTCAAGTTTGCCTATGGGTGCCACGCACGCACATTTCACTCGGCAAATTGGAGGGATAATTGGCTTCCATAAAGTTGATGCAAACCTCCAATGTATTTCAACAATATTGCCAAATGGCCAGGAATGGATTACCTCCGACACGGTCACTTCTGCCGCATGTCAACCGTGTAACCGCTGATGTTGGCTACGTACAAAACCTACCATATCAGGAGCCGTTACAGAAGGCTGAGGCAGTGGCCAGACACCAGTCCTGCTTCAGAGTAATGGAGGACACTTGAATAAGtatgtgtgtcttgTATGTTGTAAGGAGGTGCCCCCTTCCACTGTGCCAATGGACTACTCCTGGGCCTGAGTGAGTAATGTCAACCAGTCAGTGCCATGCTGGCACGTGTCCCTTGTGAATTAGCTGTGAATCATAATCTCTGATTGGCTATGTTCAACAGTGTATTTACTGTTGGCTTCAATGACTGTATGGTGAcagactttctctctccctccctctgtgataTACGAGCTGGGTCAGATATAGGAGCCTAAGTCAGGCTCCTTTATGACCAGTATCTGTGAGGAGGGACCTGGAGACGATCTACGCTGCCATAGACATCAGGTGGAAGACAGAAAGAGGTGCTTTTGAAATGGAGTCCTCAGGTTGATACTGATGTCTGAACCGGGACAGAGATCTTGCACTCAGCATTCAAATTATACAAGATATCTATTACTTGTTGTGGTCTTTTGTTATTATTGAATCGGACTGTACTATCcatgtgggacacacacacaccatacagaaatgtataatatttgcacattgttatattagcaGAACACTGCTTCTATAGTGTTATGTGAAGTAGGGTTTATTCTACATGGAACTGTTACACTTGAACGTTATCTacgtaagtggctctggataagagcgtctgctaaatgactaaaatatcaaatgtaaatgtaagttCAGCAATTGCACTCCTCTACTATTACTGATTAGGCTACTAACCTTCTGGAGGAAGCTTTGAATtggtcagtagcctacagagtgGTATGAGAAGTGCGCCATTCTCCAGTAGTTATTGAACTCTGCCTACTGGACCCATGGGTTGAAGCAAACTCTGTCACATCCGGGATGGAGTGTCATGCACTCCACTTCTCCTGTCCCCTGACTGCACCTGTCCAAAACTTCTAAAACATTACATAGATGGAAGGGACTTCAAGTCTCCAGTGGGTGAtgaagacagaacctcacccagagagctgtacatctCAGATTTGGACAAATAGAATGCTGTTCTGGTTAGACAGCTGAAGTTGTACAATACAtacaacatattttttatttgctAGGCAAGTGTAGGCATACAGTCTTAATCAGCACATCAATATGATATTTACGGCATAAAATGTTTTGTCTTtggaacagaaacacacaattttGTTGTTGATAAATGTATCTACACTCAAGCTTGGCGATATTTGTGCGAAGTTGACATGTAGCCTACACCTGTTGGGATATTAGTAGATCTAACAGCAGGCATAAGGAGAGACAAGACGAGAAATATTGTGCCAGTTAAAGAACTAGTGTTGTAGGAGAGCTGAGCTGACTCAAGACCGGGCATTGAACTCACAGTTGACACCATTTCCACAGTAACATGTCTTTACATGAAGTGATGAAACATTGAAACCAAGTTGCAAGCTATTTTGGTAGCAAGGTGTTCTAGAACAAGTGTCTTGTGAAACGCATACCAGACACTGGCTGTTGCTATCTTGCCTTAAACTGATTTCACAGAGAAATATCAGCTCGATAGACTAGACAGCTACAGCTATCCCCAAGCTATACTAGCTAGCTGCTGTCAGCTTGGCTAAACAAGGTCAGCCCAGGCTTTAGCCTACACATAGAACTGAATTAGCTGACCACCTTGAGATAACAAGTCAGTCAGGGGGAGAAGTCCTTCACTTCAGCATTTCGTTCTCTCCATAACAAAACTAGCTTAGCTTACCTCACTACTGccttgtttgttgtgattgaatgGATGGCaaagaaacacccacatcaaaccactcCCCCAAGACAACTCTCGTTTGGATCCAGTCATGGCCGCTAACATTTTATTAGACCAAACTTCAAaacgaggccaaatcaggaagttcagTCGATCTTTAAGTTTAGGATGATACAATGTTTCTGTGGGGCTCAattgtgggttgtgtgtgtgtgtgtgtgatagctaTGGGGAGGGCGTCATAGCTGTTCCCATTGGTGACGAATGCATGCCTCCGCACTGACAGGAGAGGCTTGAGCACGTTTGTGGGAATGTGGTGCAGCAGAGAGGAGGATCTCAGATTGGTTACGTAACGGACAGCAGCACAACTTTCTAATCCCGTTAGTCTATGTACGGGGAGAAGAGGGGTATGTGGTCCCCCAGGAGTGTCTGACTGCTGAGGGACTTGTGGTGCGGCTGTAATGGCCATCTGATCACTGTTCAGCCGTGATGAGTCTGTCAGAGAGGGTAGCTCGGCTTTCGACGTCTCTGGTGGCAACAAGTTAAACagaaatacacatacacaaacgtATGcctgcacgtacacacacacatgtatataaATCCATAAATAGAGATAAGAATGCTAAAATATTCATAATCACATGATGCTAGTACACTCACATACAGATACATAAATTCACCAATACTTTTGCAAATATACTCACACAATCACTGatacacaatatatatacagAGACAAATAAATGACCACATACACACCAACCAGTACAAACACACTTAAACTTAAAAGATACAAATCACACATTATTGTGCACGTTACAATACAGTTGAATTAAACAGTAATTTAATAAACATTAACTCAATGCAACAGCTAATTTAAAGAGTTTGTGACAGTGGAACCGCATTTCTCCGACTTCCCCCCTATAGTCAGTCAGGTTAAAACATTCAATTACCATCATCTTGGAAGCCAGACTTAACCCCAGTGTCAAACAGCAGCTTTTTTAAGGCTCTGCTACACAATCCTTCATCATCACTCTTATGGGCCGGAGCACAAATCTT
>XR_005052890.1
tatggagtggttgaaaaacgagttttaatgactccaacctaagtgtatgtaaacttccgaattcaactgtacatGCCCACTTTTGCCGATGATGCCCAATTGCCCAGAGACAACACATTGTGGTCTTTCCCCAGCTGCCATGTGGACATTTGTTGTCAAGTTTGCCTATGGGTGCCACGCACGCACATTTCACTCGGCAAATTGGAGGGATAATTGGCTTCCATAAAGTTGATGCAAACCTCCAATGTATTTCAACAATATTGCCAAATGGCCAGGAATGGATTACCTCCGACACGGTCACTTCTGCCGCATGTCAACCGTGTAACCGCTGATGTTGGCTACGTACAAAACCTACCATATCAGGAGCCGTTACAGAAGGCTGAGGCAGTGGCCAGACACCAGTCCTGCTTCAGAGTAATGGAGGACACTTGAATAAGGAGGTGCCCCCTTCCACTGTGCCAATGGACTACTCCTGGGCCTGAGTGAGTAATGTCAACCAGTCAGTGCCATGCTGGCACGTGTCCCTTGTGAATTAGCTGTGAATCATAATCTCTGATTGGCTATGTTCAACAGTGTATTTACTGTTGGCTTCAATGACTGTATGGTGAcagactttctctctccctccctctgtgataTACGAGCTGGGTCAGATATAGGAGCCTAAGTCAGGCTCCTTTATGACCAGTATCTGTGAGGAGGGACCTGGAGACGATCTACGCTGCCATAGACATCAGGTGGAAGACAGAAAGAGGTGCTTTTGAAATGGAGTCCTCAGGTTGATACTGATGTCTGAACCGGGACAGAGATCTTGCACTCAGCATTCAAATTATACAAGATATCTATTACTTGTTGTGGTCTTTTGTTATTATTGAATCGGACTGTACTATCcatgtgggacacacacacaccatacagaaatgtataatatttgcacattgttatattagcaGAACACTGCTTCTATAGTGTTATGTGAAGTAGGGTTTATTCTACATGGAACTGTTACACTTGAACGTTATCTacgtaagtggctctggataagagcgtctgctaaatgactaaaatatcaaatgtaaatgtaagttCAGCAATTGCACTCCTCTACTATTACTGATTAGGCTACTAACCTTCTGGAGGAAGCTTTGAATtggtcagtagcctacagagtgGTATGAGAAGTGCGCCATTCTCCAGTAGTTATTGAACTCTGCCTACTGGACCCATGGGTTGAAGCAAACTCTGTCACATCCGGGATGGAGTGTCATGCACTCCACTTCTCCTGTCCCCTGACTGCACCTGTCCAAAACTTCTAAAACATTACATAGATGGAAGGGACTTCAAGTCTCCAGTGGGTGAtgaagacagaacctcacccagagagctgtacatctCAGATTTGGACAAATAGAATGCTGTTCTGGTTAGACAGCTGAAGTTGTACAATACAtacaacatattttttatttgctAGGCAAGTGTAGGCATACAGTCTTAATCAGCACATCAATATGATATTTACGGCATAAAATGTTTTGTCTTtggaacagaaacacacaattttGTTGTTGATAAATGTATCTACACTCAAGCTTGGCGATATTTGTGCGAAGTTGACATGTAGCCTACACCTGTTGGGATATTAGTAGATCTAACAGCAGGCATAAGGAGAGACAAGACGAGAAATATTGTGCCAGTTAAAGAACTAGTGTTGTAGGAGAGCTGAGCTGACTCAAGACCGGGCATTGAACTCACAGTTGACACCATTTCCACAGTAACATGTCTTTACATGAAGTGATGAAACATTGAAACCAAGTTGCAAGCTATTTTGGTAGCAAGGTGTTCTAGAACAAGTGTCTTGTGAAACGCATACCAGACACTGGCTGTTGCTATCTTGCCTTAAACTGATTTCACAGAGAAATATCAGCTCGATAGACTAGACAGCTACAGCTATCCCCAAGCTATACTAGCTAGCTGCTGTCAGCTTGGCTAAACAAGGTCAGCCCAGGCTTTAGCCTACACATAGAACTGAATTAGCTGACCACCTTGAGATAACAAGTCAGTCAGGGGGAGAAGTCCTTCACTTCAGCATTTCGTTCTCTCCATAACAAAACTAGCTTAGCTTACCTCACTACTGccttgtttgttgtgattgaatgGATGGCaaagaaacacccacatcaaaccactcCCCCAAGACAACTCTCGTTTGGATCCAGTCATGGCCGCTAACATTTTATTAGACCAAACTTCAAaacgaggccaaatcaggaagttcagTCGATCTTTAAGTTTAGGATGATACAATGTTTCTGTGGGGCTCAattgtgggttgtgtgtgtgtgtgtgtgatagctaTGGGGAGGGCGTCATAGCTGTTCCCATTGGTGACGAATGCATGCCTCCGCACTGACAGGAGAGGCTTGAGCACGTTTGTGGGAATGTGGTGCAGCAGAGAGGAGGATCTCAGATTGGTTACGTAACGGACAGCAGCACAACTTTCTAATCCCGTTAGTCTATGTACGGGGAGAAGAGGGGTATGTGGTCCCCCAGGAGTGTCTGACTGCTGAGGGACTTGTGGTGCGGCTGTAATGGCCATCTGATCACTGTTCAGCCGTGATGAGTCTGTCAGAGAGGGTAGCTCGGCTTTCGACGTCTCTGGTGGCAACAAGTTAAACagaaatacacatacacaaacgtATGcctgcacgtacacacacacatgtatataaATCCATAAATAGAGATAAGAATGCTAAAATATTCATAATCACATGATGCTAGTACACTCACATACAGATACATAAATTCACCAATACTTTTGCAAATATACTCACACAATCACTGatacacaatatatatacagAGACAAATAAATGACCACATACACACCAACCAGTACAAACACACTTAAACTTAAAAGATACAAATCACACATTATTGTGCACGTTACAATACAGTTGAATTAAACAGTAATTTAATAAACATTAACTCAATGCAACAGCTAATTTAAAGAGTTTGTGACAGTGGAACCGCATTTCTCCGACTTCCCCCCTATAGTCAGTCAGGTTAAAACATTCAATTACCATCATCTTGGAAGCCAGACTTAACCCCAGTGTCAAACAGCAGCTTTTTTAAGGCTCTGCTACACAATCCTTCATCATCACTCTTATGGGCCGGAGCACAAATCTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005052889.1 False 3216 mRNA 0.43 4 49881643 49886226
XR_005052890.1 True 3192 mRNA 0.43 4 49881643 49886226

Neighbor

gene id symbol gene type direction distance location
zgc:110269 LOC106568705 coding downstream 226485 49647933 ~ 49655158 (-)
LOC110530006 LOC106568704 coding downstream 233795 49635475 ~ 49647848 (-)
LOC110530005 NA coding downstream 250874 49629577 ~ 49630769 (-)
LOC110530004 LOC106568703 coding downstream 269414 49601539 ~ 49612229 (-)
LOC118965614 NA coding downstream 302836 49577103 ~ 49578807 (-)
LOC110530012 LOC106568711 coding upstream 78688 49964914 ~ 49970082 (-)
LOC118965625 NA coding upstream 97163 49983389 ~ 49986205 (-)
LOC110530015 LOC106568800 coding upstream 207271 50093497 ~ 50095929 (-)
LOC110530016 LOC106568717 coding upstream 451505 50337731 ~ 50366270 (-)
LOC110530021 LOC106568720 coding upstream 526754 50412980 ~ 50434788 (-)
G718546 NA non-coding downstream 16910 49864505 ~ 49864733 (-)
G718544 NA non-coding downstream 20860 49859964 ~ 49860783 (-)
G718541 NA non-coding downstream 26244 49855104 ~ 49855399 (-)
G718537 NA non-coding downstream 31115 49850241 ~ 49850528 (-)
G718461 LOC106568706 non-coding downstream 138826 49741785 ~ 49742817 (-)
LOC110530011 LOC106568709 non-coding upstream 34717 49866272 ~ 49937001 (-)
G718580 NA non-coding upstream 37835 49924061 ~ 49924328 (-)
G718581 NA non-coding upstream 38416 49924642 ~ 49924880 (-)
G718590 NA non-coding upstream 48607 49934833 ~ 49935036 (-)
G718594 NA non-coding upstream 57490 49943716 ~ 49944228 (-)
G718489 NA other downstream 43947 49785674 ~ 49837696 (-)
G716488 NA other downstream 1092681 48788521 ~ 48788962 (-)
G716480 tnk2 other downstream 1099128 48782121 ~ 48782515 (-)
G716463 LOC106591423 other downstream 1120480 48759912 ~ 48761163 (-)
dlg1l LOC106568684 other downstream 1265120 48356004 ~ 48616588 (-)
G719151 NA other upstream 1050702 50936928 ~ 50939471 (-)
LOC110530043 LOC106568739 other upstream 1366129 51252355 ~ 51259061 (-)
G721275 NA other upstream 2874813 52761039 ~ 52761451 (-)
LOC110529122 LOC106568971 other upstream 3576956 53462034 ~ 53478913 (-)
G722459 NA other upstream 3611922 53495804 ~ 53499730 (-)

Expression


Co-expression Network