LOC110530015 (LOC106568800)


Basic Information

Item Value
gene id LOC110530015
gene name LOC106568800
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 50093497 ~ 50095929 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612771.2
ccagagcgagagagagcgataggagagcagaccagagagagagagagcgatagacgAGCAGACCAGAGAGAGATTACACTAAGGAGGGAGGACCTGTTGACATATATCTCTCAAGTCAGCCATGAGGATCTCCTTCAGGACTGGAAACTACCTCAGATAACCTGACACCACtgcaaacaagcatacagtcaacgCTGGGGCACATGGACCATGACACAACCAGGATGACTCCACTCTGAGACCCACCAAGATGCACAGCTTTGGAATTATGAACCACAACTGTCTCAACCAGCCTCCAGGAAGTTTTGTGGAGTGTGTATGTCTATCATGATGTGTTTTTGTTATGACGATCTGATTGGAGGACTGACAGGTGGAATGACTAAAGAGAGGCTGGAGGAACAGGCTTGTTAGTCTGCGCTGGTACCTATTGTGAGCTGGCTGGATCAACCTCGAGGGGGGCTCCCCTAGTAGCCATGGCTGAGATGGAGGAGTTCTCCCCCATGTCCCCGCGGCGCACCCCACGCCGGACCCCCCGTGTGCTGCGCCTGGACCCGGCCCTGCTCCAGCGGCGCGTGTTGGAGGACCAGGTGGAACTGTGGTGGTTCCGCGAGCCGCGGCGCTCCCTGCTCTGCTACTGCATCTCAGTGTGCCTCGTCCTGGGCTTGGGGCTGGGCGGCGTAGgcctcctctccaccaccaccagcctgtcCGGGGAGTGGCGCCTAGGAGTGGGCACCATGCTCTGCCTCCTAGCTCTGGCTGTCCTCCTCAAACAGCTCCTAAGCTCCGCCGTCCAGGATATGAATTGCGTTCACAGCCGGAGGCGGATAGAGTTAATGAAGAGTGGTGGGCGGGCGGACCCGGTGGTCATCATTTTCACCGGGATGGCTTTGGCACTCTGCGGAGGGGTCCTACTCTACATGTCGCTGGCCAGCGGGCACCATGGGCCCGGGCAGCGCCACAGGGATATGTTTCTGTCCGGGGTGGTGCTACTGTGGGTAGGGGGCACCACCGGGTTGGCGGTGGCTGGGTACTTGCTGGTAGTGCACCtccagcagaggagagagaggaggatgttgcAGAggcggaggaggggagggagagggttaCGGGGCAGGGCAGTCAGGGTGTTTACGGTCTCCTCTAGTAGAACTAGCCTCATCTGAGAGTGCAGACCCGGGtcttgttcattaggcaccaaacggcgTTGCCCTAATGAAAACTACCCTTGGTTGAAATAGTATTTGTATTTCTTTAAAATACTtgagctgtgcttgattgagcttgcctggcgcaaTGGGACCAGAGCCATATCATACTGTATACATCCCAGGTCTGTTGTAGAGGAGAGGAAAacaagtgaggagaggagagcaggaggtgaaaagaggagtggagagggaggcAAGTTAGGAAAGGAGAGACGAGATGAGACTAGGGGACTTAATAGATGAAGGGACTTGAGGGGAGGGAAAGATAGGAAAGGGGTATCACCACTCACTCTCCCGGGTCTGTAACAGAGTCCTGTGTTTGTTGCTGGCACTGTGACTGCGTCATCCTGTTGACTAATGCCCATTGCAGACCGTGCCTACTATGCCAACTATGCCATTCACCACTGCTGTGTTGTGGGAACCAGGCTGTGCAGGGTGACACCAGCCCCACGGACCCCCAGGACCCTCAGTCACACTGGCCATTGTTTCTATCAGTGGCAGAATGAGCGCTACACTGCCGTCGTCACAAACAAGCCACTCGCATTTGGGGAGACCCGACCAAGTCACATTGTTCTAGTTCCTCTGTGTTGTTTTGACTCACTTGTCCTATTTGATGTTATTATATTGACCCAAATTTGGTAGTCTTATCAGTGTTTAATTTGTAAATCGGAAGGTGCAGGAACCATTTTTTTGCATGAAATCGGGTGACCTGGGGGCTCAGAGGTACTGGAAAACATGACAAAATagatgcacctttataataaagcataaCGTGCATATCGTCGCATTCACCTAGTGGCATAGAGTAGAGGCGCttacagaagttgcacacatgggcagtggtggaaaaagtactcaattgtcatacttgagtaaaagtaaagataccttaatggaaaataactcaagtgaaagtgaa

Function

NR:

description
transmembrane protein 125-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612771.2 True 2130 mRNA 0.53 2 50093497 50095929

Neighbor

gene id symbol gene type direction distance location
LOC118965625 NA coding downstream 107292 49983389 ~ 49986205 (-)
LOC110530012 LOC106568711 coding downstream 123415 49964914 ~ 49970082 (-)
LOC110530011 LOC106568709 coding downstream 156496 49866272 ~ 49937001 (-)
LOC118965522 NA coding downstream 207271 49881643 ~ 49886226 (-)
zgc:110269 LOC106568705 coding downstream 438339 49647933 ~ 49655158 (-)
LOC110530016 LOC106568717 coding upstream 241802 50337731 ~ 50366270 (-)
LOC110530021 LOC106568720 coding upstream 317051 50412980 ~ 50434788 (-)
LOC110530027 LOC106568725 coding upstream 569702 50665631 ~ 50674317 (-)
LOC110530028 LOC106568726 coding upstream 582243 50678172 ~ 50685258 (-)
hsd17b7 LOC106568727 coding upstream 594418 50690347 ~ 50710421 (-)
G718648 LOC106568713 non-coding downstream 21514 50068513 ~ 50071983 (-)
G718663 LOC106568713 non-coding downstream 33922 50051445 ~ 50059575 (-)
G718625 NA non-coding downstream 92304 49994926 ~ 50001193 (-)
G718598 NA non-coding downstream 145374 49947768 ~ 49948123 (-)
G718594 NA non-coding downstream 149269 49943716 ~ 49944228 (-)
G718780 NA non-coding upstream 145072 50241001 ~ 50241249 (-)
G718781 NA non-coding upstream 145735 50241664 ~ 50241894 (-)
G718783 NA non-coding upstream 153929 50249858 ~ 50250116 (-)
G718784 NA non-coding upstream 154822 50250751 ~ 50251056 (-)
G718798 LOC106598425 non-coding upstream 201471 50297400 ~ 50383091 (-)
G718489 NA other downstream 255801 49785674 ~ 49837696 (-)
G716488 NA other downstream 1304535 48788521 ~ 48788962 (-)
G716480 tnk2 other downstream 1310982 48782121 ~ 48782515 (-)
G716463 LOC106591423 other downstream 1332334 48759912 ~ 48761163 (-)
G719151 NA other upstream 840999 50936928 ~ 50939471 (-)
LOC110530043 LOC106568739 other upstream 1156426 51252355 ~ 51259061 (-)
G721275 NA other upstream 2665110 52761039 ~ 52761451 (-)
LOC110529122 LOC106568971 other upstream 3367253 53462034 ~ 53478913 (-)
G722459 NA other upstream 3402219 53495804 ~ 53499730 (-)

Expression


Co-expression Network