LOC110530036 (LOC106568732)


Basic Information

Item Value
gene id LOC110530036
gene name LOC106568732
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 50834540 ~ 50848805 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612804.2
TATCTGCTCCCCCCTCCATCATTCACACAACTGATACTGCAAGAGGGAGGCAGCAACTGCCTGAGCTTAGGAATTGAACCCCGATAACGAATGATCAGGCTATTTGTGCACCCGATGTAGGAATTTTAGGGGTTACAAATTAAATTAGTAAGTGTTAAATTAAAAATAAGGAAGTTGAAAGAACGCGTATTCAATTCACTGATTGTGAATTATTGTTTTTGACCGCAATTTTTTTACTCACTTGTTTGAGGCGGACGCCCAGAGTTCTTCCCCTTCTGTTTTGAGGCTTAAGTTGTTGCGCAAGGCAAATGTGAGATCCACCTGCAATCTACAGAGGAGTCTGCAATCTACGGAGGAGCCTTCCAATATTTGGATGTATGTGCTCTGGAATATAAAGTGGTTTATTTTCAGAAGGCAGGAAAAATAAACGTTTTTCCCCCTTGATTGGTAATTCAGCCTCGCATCAATTCTTACACGGGCAGTTGAGCgaatttatttcatattttgacCACACGGAAAATGAAAATATCTTTTATCAGGGCTCGTGCAACCTCGAGATCTCTTTGAttcattaaaaataaacataattGGTCTCCACACTTTCAAAAATCAGGACAAGGGCAAAGTCCGGAGAGGATGAGGAGTCGCTGGGTGAAGCATGAGCTGCCAGGGTATCGGTCTTAGACAGGTGCCTGTGCTGCTCTTATGGGAGGGGGTCGCTCTGGGCCTGTTCTGCTGCTGGACTTGGGCTGGGGTTGCTGCCGCCGCGGCCGGACCCAGTGATGGCGGTGGTGCTGGGCCCATGGGCTGGCTGCTGTCGGACAAAGGGCCCTTCCACAATTCCCTGGAGTTCACGGAGTCTGTGGAGAGACACCAGCAAGGCTACACCACCAGATACAAGATCTACAGGGAGTTTGGCAGATGGAAGGTCAACAGCCTGGCGGTGGAATGGCGTGACAACAGTGGCGGCCTGGCTCCGCCCCTCGACCCTGACTTCATGCACACGGTCAGGCAGCTTGGGAGGCGGCCCACACTCCGCAGGATCACTGAGAAAATCATCAAGAAGTACGGGACTCACCTCCTACTGTCCGCCACGCTGGGAGGGGAGGAGTCCTTGACGATATTTGTGGATAAGAGGAAGCTAAGCCGCGACCCGGAACAATGGGCTGGAGCTGAGGGCAGCAGACACAATGGTACGGGGGCCATGGCAGGGGCGGTGACCCTGGAGGCCCTTCACCAGCTGGCTGCCTCCTACTTCACCGACAGGGAGAGCACTCTGCGCCGGCTCCACCACCTCCAGATTGCCTCCACTGCCATCAGGGTGACTGAAACCAGGACGGGCCCGCTTGGATGCAGTAACTATGACAACCTTGACTCTATCAGCTCAGTACTGGTCCACAGTCCAGAAAACAAGATCCAGTTACAAGGACTCCAGGTAATTCTACCAGCCTACCTGCGGAGCCGCTTCGTCCAGGCAGCCCTCAGCTACATCGGCTGTAACTCGGAGGGCCAATTTGTTTGCAGGGCCAGTGACTGCTGGTGCCAGTGCGGCCCGGACTTCCCACAGTGCAACTGTCCACAGACGGACCTCCATGCCCTGGAGAACAACCTACTGCGCCTCAGGGAGGCTTGGACACTGGCCAACCAGGAGTTTGTGGAATCAGaGGAGTTCCAAAGTTTTGTTGGAAGGTTGCCAACCCATTACGCCGTGAACACATCTGTCGTGGAGCACTTGTGGAGGATGGATGGGGGTCTGCTCCAACGCTATAGGCAGCTGGAGACCACGAGTGGCCTGCTCCTTGACAAAGCACGTCGCGCCGCTAACAAGCTCTTCAGTCTTAGCAAGAGATGCCGCCATCGGCCCAGGATAGTGCTGCAGAGGGAGAGACCCCTTCGCTACTGGCTGAGCTACATCCTGTCCCTTCTGTACTGCAGTGAGAATGACCACATCGGCCTGTACTCTGTGGAGACCCGCAGCTGCTCCtgcccctacctccacccccccTGCCAGGGCCCCGTCCCCTGCTCAGTAGGAGAGGGCCCCCGCTGCACCTCCTGTTCCACTGAGAACCGCACCCGCTGCTCCAGCTGCAACCCGGGCTTTACCCTGGGCCAGGGGCTGTGCCGACCCGCCGTGCCTGACCCCACggacccctacctgggcttggaGAGCGACCGCGACCTCCAGGACCTGGAGCTGTACTACCTGCTCCAGCACCGGGACCCGCGCATCACCTTGCACGGCATCTTCGTCAGCAACGACGTTCGCCTCAACTCCTGGTTTGACCCGTCGTGGCGGAAGAGGATGCTGCTGACCTTGAAGAGCAACCGCTACAAGTCCAACCGTGTGCACATGCTCCTGGGGGTGGCGCTCCAGGTGTGCCTGACCAAGAACAGCACGCTGGAGCCTGCGCTGTCCGTGTTTGTCAACCCATTCGGGGGCAGCCACTCGGAGAGCTGGACCATGCCCATCGGCCAGCACGGCTACCCCGACTGGGAGCGGACCAAGCTGGATATCCCCCTGGACTGCTACAACTGGACCTTGACGCTGGGCAACCGGTGGAAGAGCTTTTTCGAGACAGTGCATTTCTACCTGAGGAGCCGCATTAGGGATTCGGTGCCAGGATTGGCTCCAGGGCCAGAGGTTAGGGGACACAGGAACGCTAGTACAGTGTACCTGGAATCCCCAGAGGGCACCGTGGACCCAGTGGTAGCATCTTCATCCCAGAACATGGGCTACATGAAAATCAACAGCATGCAGCTGTTTGGATACAGCATGCACTTTGACCCGGACACCATCCAGGACCTGATCTTGCAGCTGGACTACCCGTACACTCAGGGATCCCAGGACTCGGCCCTGCTGCAGCTGGTGGAGATCCGCTACAGGGTCAACCGACTCTCTCCTCCAGGGGCTCAACCGATGGACCTGTTCTCATGTCTGCTCCGTCACAGACTGAAACTGTCCAGCTCTGAAGTGACCAGAATACTGGCTTCCTTACAGGCTTTCAGTGCCAGACAACCAAACTCTGTGGAGTACGAAGCAACCAAACTATGTAGTTAATAATGAGCGGTGGGCAGGGCCAATGTGATGTTTTTTGTATtaacccaatcagagacaatgtctGCCACATAGCTTATAGATTTTGTCCAATGGGTCCATTTGTGTCAGTGTACACTGTTCATGGCTTTAGTTGTATGTAAGTGTCATTAAATTTGATGTTTTGAATCACTCAAA

Function

NR:

description
BMP/retinoic acid-inducible neural-specific protein 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612804.2 True 3235 mRNA 0.55 8 50834540 50848805

Neighbor

gene id symbol gene type direction distance location
LOC110530035 LOC106568731 coding downstream 40946 50791220 ~ 50793594 (-)
LOC110530034 LOC106568730 coding downstream 66629 50740976 ~ 50767911 (-)
LOC110530033 LOC106568728 coding downstream 104606 50716128 ~ 50729934 (-)
hsd17b7 LOC106568727 coding downstream 124119 50690347 ~ 50710421 (-)
LOC110530028 LOC106568726 coding downstream 149282 50678172 ~ 50685258 (-)
LOC110530040 LOC106568735 coding upstream 183760 51032565 ~ 51067801 (-)
LOC110530042 kcnt2 coding upstream 278809 51127614 ~ 51189612 (-)
LOC110530043 LOC106568739 coding upstream 403550 51252355 ~ 51259061 (-)
LOC110530045 LOC106568741 coding upstream 467489 51316294 ~ 51323600 (-)
LOC110530046 LOC106568804 coding upstream 529099 51377904 ~ 51380863 (-)
G719114 NA non-coding downstream 15553 50818782 ~ 50818987 (-)
G719069 NA non-coding downstream 96224 50736259 ~ 50738316 (-)
G719068 NA non-coding downstream 100007 50734077 ~ 50734533 (-)
G719056 NA non-coding downstream 119606 50714582 ~ 50714934 (-)
G719202 NA non-coding upstream 106664 50955469 ~ 50957241 (-)
G719208 NA non-coding upstream 150589 50999394 ~ 51075009 (-)
G719250 NA non-coding upstream 232928 51081733 ~ 51082025 (-)
G719252 NA non-coding upstream 235438 51084243 ~ 51084510 (-)
LOC110530011 LOC106568709 other downstream 945288 49866272 ~ 49937001 (-)
G718489 NA other downstream 996844 49785674 ~ 49837696 (-)
G716488 NA other downstream 2045578 48788521 ~ 48788962 (-)
G716480 tnk2 other downstream 2052025 48782121 ~ 48782515 (-)
G716463 LOC106591423 other downstream 2073377 48759912 ~ 48761163 (-)
G719151 NA other upstream 88123 50936928 ~ 50939471 (-)
G721275 NA other upstream 1912234 52761039 ~ 52761451 (-)
LOC110529122 LOC106568971 other upstream 2614377 53462034 ~ 53478913 (-)
G722459 NA other upstream 2649343 53495804 ~ 53499730 (-)

Expression


Co-expression Network