LOC110530043 (LOC106568739)


Basic Information

Item Value
gene id LOC110530043
gene name LOC106568739
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 51252355 ~ 51259061 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612816.2
TGACTACGCTCAGGCGCTGCATGATTACATTGGCTTTCTTTCCTGCTCGAGCCAAGACGTGTGTTAACGTTGAAGTGGGGGTAGCTATAGTTGGAGACACTAAATTGACCCGTAAGCAGTGCAACATTGGCTGTGAAGGTCTTGTCCTAGAAACGACATATTTGAGTGAATAGGAAGCTGTATATTTTTAACAAATTCAAAAATGTCTTGGCAAAGCTACGTGGATAACCTGATGGCCGACGGCAGCTGTCAGGATTCCGCCATTGTTGGGTATACGGACGCCAAATACGTTTGGGCAGCACATGCCGGTGGTACTTTTAGCAACATAACGCCTCAAGAAATTGATGTCCTCATTGGAAAGGACAGGACTAGCTTCTTCACCAACGGCATGGCCTTGGGTTCAAAGAAGTGCTCGGTCATCAGAGACAGCCTCCATAGTGAAGGGGACTGGACAATGGACATCAGGACAAAGAGTCAAGGAGGAGAGCCAACGTACAACATTACTGTAGGCAAAGCTGGCAAAGCATTAGTTTTAGTCATGGGAAAGGAAGGGGTCCATGGCGGACAGCTCAACAAGCAAGCATTTACCATGGCTGAGCACCTGAGGAAGTCTGGATATTGAAGCAGCCTCTACCCATCATCTTTCTCACCTCCATTGTGTTGACAGTACTTTGAGGATTAGTTAGCAGACACATTAGTACTCTTCCCCAGTTCCATTTTTATGTACACcctttgttttattttttgttcattcatgttttttttgtccCTTTTCCTCACCATTCTTTCTCAGAGCATTAACACTATGTACCCTATTTCTGACACTAAAGTAAGAACATGTTCATCAGAAATGGTTGAAATGTATATTTACCAAAAGGGAAATGTGCAaagaaattcataaaaaatataattaaatTGTGTACCAAATTTGGACTTGGCTTGTATAAACAAATACTTAGTAATTGGAAAATGACAGGAGGAAGCATCCCTTAATTGGTTGCGTCGTTCGATGGTGCAGACAGTTTCGCATAGGAAAATGTATTTTCAGAATTTTGAAGCGATGACCGTCTGGTGTGGTCTCTTTCCTCAGCATGTCAGGGTTTGAAAGTTGCATGCATATCTTTTAGTCGCCTTTCCCAAACCTTTATATTCCATCCAGAAATGTTATTTTAATTCAGTCCTTCTTGCATTGTCATTTGATACATACATCCATTAAGGTAAAGATTTCCTCCAGCATAGTCCTCTAAACATACTTTGAACCCCCTCAGCTGAGTCAGCCCACTATTTCGATTTTATTTTCTTTAGGTTGCATTATCTTCCATCAACTGCTTTTGCTGTTGTAACTTGAATGTGGTCTTACAAGTCATTGATGTGGTGTTGGAATATTGTTTGAAAGTAATGGCAGATAAGATCAGCATTGctgagttaaaaaatatatatatattcctcccATGAACCTTCAATACGTCTTAAAGTCCTCATGGACATTCCATCTTTGCAATAGCTCAGGCACATATCTAGGATATGCCAGCTCCTGCAATTTTATTTCACGCTGCTGACATTGCGCAGTGTATCGTCCCTACAAACCATGTTTTGGCAAGTTATTTTCCATAGGACCAATTGTCTGTCAGGGTGATTTTCAGAATAGCTTCAAACCATTGTGAAAGATTGTTGCCCTCATTTTGTCAGTCATTAGACACTATACTTCAGATGGCTTTAAAACACTTACTGCTTCTTTAGATTACTTAGAAACTAATTGATTTACTGCTAATTTGTTAACGGGTGAAATTGCAGTCTCATTGGACAACTGGTAATGAGTGTATTCTTAGTGAATGACCGTAAACCCAAGCTCTGCTGGGCAAAACTCTTTGAATGAGTTGCCTTGTGCTCTACTCATCAAAGATGTATCAGCAACTGTCAGCACACTACTTAACAGTATATTAAAAACAACATTGAAAGTGTTTACACTAAATTGGTGGAAAATGGTGTTGGTTGGAATAAGAACACTAGTGAGTTGTCTTGTGAAAACTTTCAAAGAAAACTATCCTGTGCCATAACGTAGATCTGATTTGTTGCTACTGTGAGTTAGATTTTGAACTTCTGCCCCAGCAAGGACTATGGCTCTTTCCTCCTGTAAAGGCTTTGTGGAATATGTCCAGAACTACACATTTCACACTGATTAGTGATTTTTCTTTCCCCTATGCATTTGGATTCAGTCAGTTATTAAATTTGCATTTTGATACATGTTTGGGGGAAAATGCCATAAATTGATAAATCAccttgtttacagacagatcaaaTAAAAGTTATTCCAACCAGAACTGTCAA
>XM_021612817.2
ATACTGACTACGCTCAGGCGCTGCATGATTACATTGGCTTTCTTTCCTGCTCGAGCCAAGACGTGTGTTAACGTTGAAGTGGGGGTAGCTATAGTTGGAGACACTAAATTGACCCGTAAGCAGTGCAACATTGGCTGTGAAGGTCTTGTCCTAGAAACGACATATTTGAGTGAATAGGAAGCTGTATATTTTTAACAAATTCAAAAATGTCTTGGCAAAGCTACGTGGATAACCTGATGGCCGACGGCAGCTGTCAGGATTCCGCCATTGTTGGGTATACGGACGCCAAATACGTTTGGGCAGCACATGCCGGTGGTACTTTTAGCAACATAACGCCTCAAGAAATTGATGTCCTCATTGGAAAGGACAGGACTAGCTTCTTCACCAACGGCATGGCCTTGGGTTCAAAGAAGTGCTCGGTCATCAGAGACAGCCTCCATAGTGAAGGGGACTGGACAATGGACATCAGGACAAAGAGTCAAGGAGGAGAGCCAACGTACAACATTACTGTAGGCAAAGCTGGCAAAGTCTTGGTTCTTGTAATGGGCAAAGAAGGGGTCCATGGAGGCGGATTGAATAAGAAGCATTAGTTTTAGTCATGGGAAAGGAAGGGGTCCATGGCGGACAGCTCAACAAGCAAGCATTTACCATGGCTGAGCACCTGAGGAAGTCTGGATATTGAAGCAGCCTCTACCCATCATCTTTCTCACCTCCATTGTGTTGACAGTACTTTGAGGATTAGTTAGCAGACACATTAGTACTCTTCCCCAGTTCCATTTTTATGTACACcctttgttttattttttgttcattcatgttttttttgtccCTTTTCCTCACCATTCTTTCTCAGAGCATTAACACTATGTACCCTATTTCTGACACTAAAGTAAGAACATGTTCATCAGAAATGGTTGAAATGTATATTTACCAAAAGGGAAATGTGCAaagaaattcataaaaaatataattaaatTGTGTACCAAATTTGGACTTGGCTTGTATAAACAAATACTTAGTAATTGGAAAATGACAGGAGGAAGCATCCCTTAATTGGTTGCGTCGTTCGATGGTGCAGACAGTTTCGCATAGGAAAATGTATTTTCAGAATTTTGAAGCGATGACCGTCTGGTGTGGTCTCTTTCCTCAGCATGTCAGGGTTTGAAAGTTGCATGCATATCTTTTAGTCGCCTTTCCCAAACCTTTATATTCCATCCAGAAATGTTATTTTAATTCAGTCCTTCTTGCATTGTCATTTGATACATACATCCATTAAGGTAAAGATTTCCTCCAGCATAGTCCTCTAAACATACTTTGAACCCCCTCAGCTGAGTCAGCCCACTATTTCGATTTTATTTTCTTTAGGTTGCATTATCTTCCATCAACTGCTTTTGCTGTTGTAACTTGAATGTGGTCTTACAAGTCATTGATGTGGTGTTGGAATATTGTTTGAAAGTAATGGCAGATAAGATCAGCATTGctgagttaaaaaatatatatatattcctcccATGAACCTTCAATACGTCTTAAAGTCCTCATGGACATTCCATCTTTGCAATAGCTCAGGCACATATCTAGGATATGCCAGCTCCTGCAATTTTATTTCACGCTGCTGACATTGCGCAGTGTATCGTCCCTACAAACCATGTTTTGGCAAGTTATTTTCCATAGGACCAATTGTCTGTCAGGGTGATTTTCAGAATAGCTTCAAACCATTGTGAAAGATTGTTGCCCTCATTTTGTCAGTCATTAGACACTATACTTCAGATGGCTTTAAAACACTTACTGCTTCTTTAGATTACTTAGAAACTAATTGATTTACTGCTAATTTGTTAACGGGTGAAATTGCAGTCTCATTGGACAACTGGTAATGAGTGTATTCTTAGTGAATGACCGTAAACCCAAGCTCTGCTGGGCAAAACTCTTTGAATGAGTTGCCTTGTGCTCTACTCATCAAAGATGTATCAGCAACTGTCAGCACACTACTTAACAGTATATTAAAAACAACATTGAAAGTGTTTACACTAAATTGGTGGAAAATGGTGTTGGTTGGAATAAGAACACTAGTGAGTTGTCTTGTGAAAACTTTCAAAGAAAACTATCCTGTGCCATAACGTAGATCTGATTTGTTGCTACTGTGAGTTAGATTTTGAACTTCTGCCCCAGCAAGGACTATGGCTCTTTCCTCCTGTAAAGGCTTTGTGGAATATGTCCAGAACTACACATTTCACACTGATTAGTGATTTTTCTTTCCCCTATGCATTTGGATTCAGTCAGTTATTAAATTTGCATTTTGATACATGTTTGGGGGAAAATGCCATAAATTGATAAATCAccttgtttacagacagatcaaaTAAAAGTTATTCCAACCAGAACTGTCAA
>XM_021612815.2
GATACTGACTACGCTCAGGCGCTGCATGATTACATTGGCTTTCTTTCCTGCTCGAGCCAAGACGTGTGTTAACGTTGAAGTGGGGGTAGCTATAGTTGGAGACACTAAATTGACCCGTAAGCAGTGCAACATTGGCTGTGAAGGTCTTGTCCTAGAAACGACATATTTGAGTGAATAGGAAGCTGTATATTTTTAACAAATTCAAAAATGTCTTGGCAAAGCTACGTGGATAACCTGATGGCCGACGGCAGCTGTCAGGATTCCGCCATTGTTGGGTATACGGACGCCAAATACGTTTGGGCAGCACATGCCGGTGGTACTTTTAGCAACATAACGCCTCAAGAAATTGATGTCCTCATTGGAAAGGACAGGACTAGCTTCTTCACCAACGGCATGGCCTTGGGTTCAAAGAAGTGCTCGGTCATCAGAGACAGCCTCCATAGTGAAGGGGACTGGACAATGGACATCAGGACAAAGAGTCAAGGAGGAGAGCCAACGTACAACATTACTGTAGGCAAAGCTGGCAAAGTCTTGGTTCTTGTAATGGGCAAAGAAGGGGTCCATGGAGGCGGATTGAATAAGAAGGCATACTCAATGGCAAAATACTTGAGGGATTCGGGGTTCTAGTGTCACCAAGCTTGCTTAGTTAAAATTGAGGGACAAAAAGAAGAGAATAAATATTGCTTTTAAGATTTCTTCTGCAAACAGGCAAATGTCGTGGAAACTTTAATAGCAATGAAGAGTAATGGTCGTGGTGGGAACATCCTATGTCACTTTTATCCCCACTCTTAGTGGGGAAAAAGACTATTTTCAGTTTTGTTCATTTTTCTTTTTGTTTCCTTGTGTG
>TU817704
CTTTCCTGCTCGAGCCAAGACGTGTGTTAACGTTGAAGTGGGGGTAGCTATAGTTGGAGACACTAAATTGACCCGTAAGCAGTGCAACATTGGCTGTGAAGGTCTTGTCCTAGAAACGACATATTTGAGTGAATAGGAAGCTGTATATTTTTAACAAATTCAAAAATGTCTTGGCAAAGCTACGTGGATAACCTGATGGCCGACGGCAGCTGTCAGGATTCCGCCATTGTTGGGTATACGGACGCCAAATACGTTTGGGCAGCACATGCCGGTGGTACTTTTAGCAACATAACGCCTCAAGAAATTGATGTCCTCATTGGAAAGGACAGGACTAGCTTCTTCACCAACGGCATGGCCTTGGGTTCAAAGAAGTGCTCGGTCATCAGAGACAGCCTCCATAGTGAAGGGGACTGGACAATGGACATCAGGACAAAGAGTCAAGGAGGAGAGCCAACGTACAACATTACTGTAGGCAAAGCTGGCAAAGTCTTGGTTCTTGTAATGGGCAAAGAAGGGGTCCATGGAGGCGGATTGAATAAGAAGGCATACTCAATGGCAAAATACTTGAGGGATTCGGGGTTCTAGTGTCACCAAGCTTGCTTAGTTAAAATTGAGGGACAAAAAGAAGAGAATAAATATTGCTTTTAAGATTTCTTCTGCAAACAGGCAAATGTCGTGGAAACTTTAATAGCAATGAAGAGTAATGGTCGTGGTGGGAACATCCTATGTCACTTTTATCCCCACTCTTAGTGGGGAAAAAGACTATTTTCAGTTTTGTTCATTTTTCTTTTTGTTTCCTTGTGTGCTCCAGCATTAGTTTTAGTCATGGGAAAGGAAGGGGTCCATGGCGGACAGCTCAACAAGCAAGCATTTACCATGGCTGAGCACCTGAGGAAGTCTGGATATTGAAGCAGCCTCTACCCATCATCTTTCTCACCTCCATTGTGTTGACAGTACTTTGAGGATTAGTTAGCAGACACATTAGTACTCTTCCCCAGTTCCATTTTTATGTACACcctttgttttattttttgttcattcatgttttttttgtccCTTTTCCTCACCATTCTTTCTCAGAGCATTAACACTATGTACCCTATTTCTGACACTAAAGTAAGAACATGTTCATCAGAAATGGTTGAAATGTATATTTACCAAAAGGGAAATGTGCAaagaaattcataaaaaatataattaaatTGTGTACCAAATTTGGACTTGGCTTGTATAAACAAATACTTAGTAATTGGAAAATGACAGGAGGAAGCATCCCTTAATTGGTTGCGTCGTTCGATGGTGCAGACAGTTTCGCATAGGAAAATGTATTTTCAGAATTTTGAAGCGATGACCGTCTGGTGTGGTCTCTTTCCTCAGCATGTCAGGGTTTGAAAGTTGCATGCATATCTTTTAGTCGCCTTTCCCAAACCTTTATATTCCATCCAGAAATGTTATTTTAATTCAGTCCTTCTTGCATTGTCATTTGATACATACATCCATTAAGGTAAAGATTTCCTCCAGCATAGTCCTCTAAACATACTTTGAACCCCCTCAGCTGAGTCAGCCCACTATTTCGATTTTATTTTCTTTAGGTTGCATTATCTTCCATCAACTGCTTTTGCTGTTGTAACTTGAATGTGGTCTTACAAGTCATTGATGTGGTGTTGGAATATTGTTTGAAAGTAATGGCAGATAAGATCAGCATTGctgagttaaaaaatatatatatattcctcccATGAACCTTCAATACGTCTTAAAGTCCTCATGGACATTCCATCTTTGCAATAGCTCAGGCACATATCTAGGATATGCCAGCTCCTGCAATTTTATTTCACGCTGCTGACATTGCGCAGTGTATCGTCCCTACAAACCATGTTTTGGCAAGTTATTTTCCATAGGACCAATTGTCTGTCAGGGTGATTTTCAGAATAGCTTCAAACCATTGTGAAAGATTGTTGCCCTCATTTTGTCAGTCATTAGACACTATACTTCAGATGGCTTTAAAACACTTACTGCTTCTTTAGATTACTTAGAAACTAATTGATTTACTGCTAATTTGTTAACGGGTGAAATTGCAGTCTCATTGGACAACTGGTAATGAGTGTATTCTTAGTGAATGACCGTAAACCCAAGCTCTGCTGGGCAAAACTCTTTGAATGAGTTGCCTTGTGCTCTACTCATCAAAGATGTATCAGCAACTGTCAGCACACTACTTAACAGTATATTAAAAACAACATTGAAAGTGTTTACACTAAATTGGTGGAAAATGGTGTTGGTTGGAATAAGAACACTAGTGAGTTGTCTTGTGAAAACTTTCAAAGAAAACTATCCTGTGCCATAACGTAGATCTGATTTGTTGCTACTGTGAGTTAGATTTTGAACTTCTGCCCCAGCAAGGACTATGGCTCTTTCCTCCTGTAAAGGCTTTGTGGAATATGTCCAGAACTACACATTTCACACTGATTAGTGATTTTTCTTTCCCCTATGCATTTGGATTCAGTCAGTTATTAAATTTGCATTTTGATACATGTTTGGGGGAAAATGCCATAAATTGATAAATCAccttgtttacagacagatcaaaTAAAAGTTATTCCAACCAGAACTGTCAA

Function

NR:

description
profilin-2-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612816.2 False 2328 mRNA 0.40 3 51252355 51259056
XM_021612817.2 False 2388 mRNA 0.40 4 51252355 51259060
XM_021612815.2 False 847 mRNA 0.44 3 51254165 51259061
TU817704 True 2615 TUCP 0.39 3 51252355 51259019

Neighbor

gene id symbol gene type direction distance location
LOC110530042 kcnt2 coding downstream 62743 51127614 ~ 51189612 (-)
LOC110530040 LOC106568735 coding downstream 184554 51032565 ~ 51067801 (-)
LOC110530036 LOC106568732 coding downstream 403550 50834540 ~ 50848805 (-)
LOC110530035 LOC106568731 coding downstream 458761 50791220 ~ 50793594 (-)
LOC110530034 LOC106568730 coding downstream 484444 50740976 ~ 50767911 (-)
LOC110530045 LOC106568741 coding upstream 57233 51316294 ~ 51323600 (-)
LOC110530046 LOC106568804 coding upstream 118843 51377904 ~ 51380863 (-)
mfsd8l2 LOC106568744 coding upstream 237019 51496080 ~ 51516909 (-)
LOC110530051 LOC106568746 coding upstream 266206 51525267 ~ 51546934 (-)
LOC110530052 LOC106568747 coding upstream 301739 51560800 ~ 51582355 (-)
G719702 NA non-coding downstream 23684 51228401 ~ 51228671 (-)
G719701 NA non-coding downstream 24053 51228088 ~ 51228302 (-)
G719697 NA non-coding downstream 27590 51224529 ~ 51224765 (-)
G719696 LOC106613263 non-coding downstream 27949 51223886 ~ 51224406 (-)
G719761 NA non-coding upstream 52828 51311889 ~ 51312674 (-)
G719762 NA non-coding upstream 54247 51313308 ~ 51313537 (-)
G719767 NA non-coding upstream 69145 51328206 ~ 51328432 (-)
G719835 LOC106568743 non-coding upstream 179893 51438954 ~ 51439395 (-)
G719151 NA other downstream 312884 50936928 ~ 50939471 (-)
LOC110530011 LOC106568709 other downstream 1363103 49866272 ~ 49937001 (-)
G718489 NA other downstream 1414659 49785674 ~ 49837696 (-)
G716488 NA other downstream 2463393 48788521 ~ 48788962 (-)
G716480 tnk2 other downstream 2469840 48782121 ~ 48782515 (-)
G721275 NA other upstream 1501978 52761039 ~ 52761451 (-)
LOC110529122 LOC106568971 other upstream 2204121 53462034 ~ 53478913 (-)
G722459 NA other upstream 2239087 53495804 ~ 53499730 (-)
G722602 NA other upstream 2544382 53803443 ~ 53856065 (-)
G722670 NA other upstream 2667167 53926228 ~ 53927959 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location