LOC110530052 (LOC106568747)


Basic Information

Item Value
gene id LOC110530052
gene name LOC106568747
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 51560800 ~ 51582355 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612832.2
CCCATTTCTAAAAATGTATATtcttaaaattgtattttaaacctaaacctaatcctaacctaaACCACACTGCCAACCTTATGTTCAACCCTAACCTTATATTAAGACCAAACAGCTGTATATATCTTCTTTTGTCAATTTGGATTTTGTGGCTATAGAAGCTAGTGGAAACCGCCAGGCAGGCAGCTTTGTCAAACGAACATTAAGCTCTCTGACCAGCGGCTTGCGAGCAATCAAAATGACGTTTTTTCGATATTCAGCTGGGCATCACGACATGGAATGTAATGGACTTATTAATTGGGAAAACATTCATATTGACAGCGAAAGACGTCTTTGTTGAGAAACCGGACTGTCCCGACATTTGGATGGAGTAGCAAGCCAGCGCTACGACTGAGGGCGAGAGGTCTAGAACGGctggtaGACCCAACTCATTGTAATTATTAGCATAGTGAGGAGCAGCCGACCCGACCACCATGCCTCCCAGGCCATCTTCGGGGGAACTATGGGGCATGCACTTGATGCCCCCAAGCATCATGGTGGACTGCCTTCTCCCCAATGGGATGATTCTGACATTGGAGTGCACACGTGAGGCCACACTCATTTCAGTGAAACACGAACTCTTCAAGGAGGCCAGGAAGTATCCGCTCCACCACCTCCTACAGGAGGAGACCTCCTACATCTTTGTCAGCGTTACccaagaggctgagagagaggagtTCTACGATGAGACGAGGAGACTGTGTGACCTAAGGCTTTTTCAGGCCTTCCTGAAAGTCATCGAGCCAGTAGGCAACCGAGAGGAGAAAATACTCAACCGAGAAATTGGTTTTGCCATAGGAATGCCGATATGTGAGTTTGACCTGGTCAAGGACGCAGAGGTCCAGGACTTTAGAAGGAACATATTAAATGTCTGCAAGGAGTCTGTGGACCTCCGAGACACGAACGGACCCATCAGTAGAGCGTTGTACGTCTACCCTCCCAATGTAGAGTCGTCAGTAGAACTACCTAAGCACATCTTCAATAAGCTTGACAAAGGTCAAATCATAGTGGTCATATGGGTCATCGTGTCACCGAGCAACGACAAGCAGAAGTACACGCTGAAGATCAACCATGACTGCGTGCCGGAGCACGTGATCGCAGAGGCCATCCGCAAGAAGACACGTAGCATGCTGCTGTCCCACGAGCAGCTCAAGATGTGCGTGCAGGAGTATCAGGGCAAGTACATCCTCAAGGTGTGCGGCTGCGACGAGTATCTGCTGGAGAAataccccctgagtcaatacaagTACGTGAGGAGTTGCATCATGCTGGGGCGCATGCCCAACCTCATGCTAATGGCAAAGGACAGCCTGTACTCACAGCTGCCCATCGATACCTTTACCATGCCCTCGTATGCCCGCCGCATCTCCACGGCCACTCCCTACATGAACGGCGAGACGGCCACCAAGTCTCTGTGGACCATCAACGGCACTCTGAGGATAAGGATACTGTGTGCCACCTACGTCAATGTCAACATCAGGGACATTGACAAGATCTACGTCCGGACTGGGATTTACCACGGTGGGGAGCAGCTGTGTGACAACGTGAACACTCAGCGCGTGCCATGCTCAAACCCCAGGTGGAACGAGTGGCTGAACTACGACATGTACATTCCAGACATCCCCCGCGCTGCCCGACTCTGTCTGTCAATCTGTTCTGTGAAAGGGAGGAAGGGGGCCAAAGAGGAGCACTGTCCACTAGCCTGGGGAAACATCAACCTGTTTGATTACACCCATACGCTGGTGGCTGGAAAGATGGCCCTCAACCTATGGCCCGTGCCCCATGGCCTGGAAGACCTGCTCAATGCTATCGGAGTCACCGGCTCCAATCCGAACAAGGAAACCCCTTGCCTGGAGCTGGAGTTTGACCACTTCAGTAACCCAGTGAAGTTCCCCGACATGCCGGCCATCGAGGAGCACGCCAACTGGAACATATCCCGGGAGCTGGGCTTCAACTATTGCCACACCGGTTTGAGTAACAGACTGGCAAGGGACAACCCTCTGACGGACAGCGACAACGAACAGCTGCGCCTGGTGTGTAACAGAGACCCACTGTCTGAAATAACTGAGCAGGAGAAGGACTTCCTCTGGAGGCACAGACATTACTGTGTCAGTATCCCGGAGATACTGCCCAAGATTCTCCTGGCAGTGAAATGGAACTCCAGGGATGAGGTTGCACAGATGTATTGCCTTTTAAAGGACTGGCCAGCCATAAAGCCAGAACAAGCCATGGAGTTGCTGGACTGCAACTTCCCCGATCCCATGATCCGAGACTTTGCTGTGAAGTGCCTTGAAAAATACTTAACGGACGACAGACTCTCTCAATACCTCATTCAGCTGGTCCAGGTTCTGAAGTACGAGCAGTACCTCGATAACCCACTGGCCCGCTTTCTGCTGAAGAAGGCTTTGACCAATCAGAGGATAGGCCATTTCTTCTTTTGGCATCTCAAGTCTGAGATGCACAACAAGACAGTGAGCCAACGTTTTGGTCTGCTGCTGGAGTCCTACTGCCGGGCCTGTGGCATGTACCTGAAGCACCTGAGCAGACAGGTGGAGGCCATGGAGAAGCTCATCAACCTCACAGACCTCCTCAAGCAGGAGAAGAAGGACGAGGCCCAGAAGgTTCAGATGAAGTTCTTGGTGGAGCAGATGAAAAGGCCTGACTACATGGATGCCCTACAGAGCTTCACCTCTCCGCTCAACCCAGCTCACCAGCTGGGAAACCTCCGCTTGGAAGAGTGCCGGATGATGTCATCGGCCAAACGGCCTCTGTGGCTCAACTGGGAGAATCCCGACATGATGTCAGAGCTGCTCTTCCAGAGCAACGAGATCATCTTCAAAAATGGAGACGATCTGAGGCAGGACATGCTGACTCTGCAGATCATTAGGATAATGGAGAACATCTGGCAGAACCAGGGGCTTGATCTCAGGATGTTGCCGTACGGCTGCCTGTCCATCGGCGACTGCGTGGGCCTGATCGAGGTGGTGAGGAACTCCCACACCATCATGCAGATCCAGTGTAAAGGAGGCCTGAAGGGGGCGCTGCAGTTCAACAGCCACACGCTGCACCAGTGGCTCAAGGACAAGAACAGGGGAGAGATGTATGACCAGGCCATTGACTTGTTCACACGGTCGTGTGCGGGATACTGCGTAGCCACCTTCATCCTGGGGATCGGTGACCGACACAACAGCAACATCATGGTCAAAGATGATGGACAGCTATTCCACATCGACTTTGGCCATTTCCTGGATCACAAGAAGAAGAAGTTTGGCTACAAGCGAGAGCGGGTGCCTTTTGTCTTGACACAGGACTTCTTAATCGTTATCAGCAAAGGAACCCAGGAGTGCACAAAAACCAGGGAGTTTGAGagGTTTCAGGAGATGTGCTACAAGGCCTACTTGGCCATCCGGCAGCACGCCAACCTCTTCATCAACCTGTTCTCTATGATGCTGGGCTCCGGCATGCCCGAGCTGCAGTCGTTCGACGACATCGCCTACATCCGTAAGACCCTTGCCCTGGACAAGACGGAGCAGGAGGCCCTGGACTACTTCATGAAGCAGATGAATGACGCACACCACGGCGGCTGGACCACCAAAATGGACTGGATCTTCCACACCATCCGCCAGCACGCCATGAACTGAGAGGTTCCATAGGCCTGGAGAGCCACAGCAACGCAGAGAGGACAAGGGCGGATCTCGACACCATCCGCTAGCTAAGCTCGCCATGAGCAGAGATGGCAGAGCAGACTGGGCTAGCGCCCATGAATATAGATATGAATGGATAGAGCTGTTGGATGAAGTGAAAGGCTAGAACGGGTCTCTAAATCATCCGCTAACTTATGAACCCATCCGTTAGAAGTGTGCCAACTGGATATTAGGGATGCACCGATGGGGGAAATTATGGGCTGATACGATAATCATATTTTTGGGCCGTTATTTTTCCCGTATTGGTATTGCAATATGGCCATAAAGTTTTCTCCTTGTAAATTTAGGGGACCAATCATGATTACAAACAATTTGATGACGGCTGATCTCTATTTTATTATCAGTCGATAGTGATATGAAGGGTGATCTATTGCTTTATCGGCCAATATATCACGTCTACTGATATGCGGGCCGAttttaaaaagaaagaaaaaaaagattgTCATCCGATATTGTGCATCCCTAAATAGCGTACCCCATCCACTAGTTTACTATGGACAGAGTGGATCTCTAGCCTACATTCTGCTAGCATGCCAGGACACCATGAAGGCCTgcccagggtcatgttcattagggcatgcaacAGAAAGTGAACAattgtttcttattggacaaatcaTGGCAGTCTGTTTTCTTCCGCTTGGAGCCCAATGAACACTACCCAGAATACCACCAGCATTGTTAAATCCCAGTGGTGCATGGTTAACAGACACGAGGATGTCCGTTCATCATCTGCTGTCAATTTTAAGGCTAGCAAGCAGAACTTTCTGACCCATGTTTGATCTCAAGTGACGATTACAGTGTCCCCTCAGATTGAAACAGTCATGTTTCGTGACCTCAAGTATGACATTTTGTACAGAAGTATCCCAATGGTCTCGTATCCATACTGTGCACATATTATTCTGAGTCTTTATTTTCTACTGAGCCAAAgtactaaaatatatatatatatctcacccacccatacacacacacacacacacacccccgacAGCTTAGTTATCGGTCTTACCGTGGGAATGAGTCACTACTATTCCAATCCCTGTGTATCTTCTGTGTAGCACTGATCTCTAACATTTGTATTTGTTTGTCAGTGTTACGACGCGTGTGGAGCATTCAGGTGCAAAATGGCTGCCGTCCAGCACCGTTGGCTGCAACGCAGACGTTTTGGATGACCGACAGAAAAGAACTGTAAAGTCCTTTTGCGACGCCCAGATGAAATAGATATTCAAATTCATCCTCGTTCTGTTTTTATTGGTTGCTTTGTTtttaaagggaaaggggggggggggcgaaaaGGATGTGCAATGTTATAGAATGCCGTGCTGTTACACTATGCAAATTGTGATATTTATGTACTGTACTATAGACTTGTAATACTGGTGTCAAGGCAAAGTAGGGTCAAGAGATGGGAGTATCTCTGAATTGTGCATATACACCGCATTAAGGGTGTCTCAACTATGTACAGACAGTACACAGAAGACAAATGTACAATTATGCACTGTGACAGTATCACTTCTCTTCCCTAACAGGGTGACTCTGGAAGAACTGAAAAAAGGCTATTGTACCCTGCCTTTCACTTTAGGAAACTAATGAAAAGAAACAACCCACAGGTCGGAAAACTATCAGTGAAACATCTAAACAGACATTTTAGGAAGCGTttgaaaccatttttttttaactgaatTGGAATTTGTTTCACCCTGTCTTTATAAAATTCAAGTATGTATAGATTAGACACTATTCCAGACTTCCTCAGCATTCTCTTTTCATATGAACTCCCTATacagtaaagtttttttttttttttttttttttttttttttttttactgatgtGAATGTGGTTTTCCCTTCAAGTGTCTTTTTCTGTTCCCTTCCCCGACAACTTCCCTTGTAAGTGTGGATCCTGCAGTTTGCTCATTGCATAGAGCTAGGTTATTAGTCAGTTGTATGCCAGCTTCACCAAAtgatttactgtgtgtgtttctgtacaggttacagactgttGGGCAGGACCCAGTCAAAACGAGACAACTACAATACCCATAGTACATACACTATGCAAGAGCTATCATAAATGTTTCTTTTCATTTTTGTTGTGGGAAATGTCATCCTTTTCTCTTACTAGTGTTTACTTGAAGTTCATGTTAATTACCTTTTTTTGTTACTGGTGAGGTACAATGGCACACCATGAAGAGAACTGCTACTTTGTGCAAATCACTTTCCTTGAATAACTCTAGAGGTAATATATTTTTGTATTCTAAATGTAGACAAACTCAAAATATAATCGCTAACCCTCCCAAAAACATTGGACTTATGCATAATACATCCTTTTACACCCCAGTAGACAGCTTGTTGTCGTTGAAATGAGAAACGAGTGACGAATGAATGAAGGAGGGAAATGTATCTAGTGGAGTTTCACTGAAGGTCTGCTGCTCTGACTGAGTACAGTGTAAAAGCACAATGGTGAAAAGCTATCCTGCATGTTTTTAAAGCTGATATTCTTATCTAGCTATTCATCTTTGTAAATATTGTTTGACCTGTAGTATGCACTAATTAATCTTTCATACTCATTCATTTTACCATGTCTGGAAATAACCCTGTATTCATTCACTCATTGTACTgtttaatacaaataaaaaatttcTGTATCCCTGTCATA

Function

NR:

description
PREDICTED: phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit alpha isoform-like

GO: NA

KEGG:

id description
K00922 PIK3CA_B_D; phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha/beta/delta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612832.2 True 6407 mRNA 0.47 21 51560800 51582355

Neighbor

gene id symbol gene type direction distance location
LOC110530051 LOC106568746 coding downstream 13866 51525267 ~ 51546934 (-)
mfsd8l2 LOC106568744 coding downstream 43891 51496080 ~ 51516909 (-)
LOC110530046 LOC106568804 coding downstream 179937 51377904 ~ 51380863 (-)
LOC110530045 LOC106568741 coding downstream 237200 51316294 ~ 51323600 (-)
LOC110530043 LOC106568739 coding downstream 301739 51252355 ~ 51259061 (-)
LOC110530053 LOC106568748 coding upstream 1170 51583525 ~ 51591883 (-)
si:dkey-18p12.4 LOC106568750 coding upstream 66183 51648538 ~ 51689345 (-)
eif4a2 LOC106568752 coding upstream 159859 51742214 ~ 51751447 (-)
LOC118965688 NA coding upstream 161522 51743877 ~ 51744055 (-)
LOC118965689 NA coding upstream 166869 51749224 ~ 51749294 (-)
G719854 NA non-coding downstream 94572 51465976 ~ 51466228 (-)
G719842 NA non-coding downstream 113816 51446739 ~ 51446984 (-)
G719841 LOC106568743 non-coding downstream 115280 51445220 ~ 51445520 (-)
G719835 LOC106568743 non-coding downstream 121405 51438954 ~ 51439395 (-)
G719930 NA non-coding upstream 5597 51587952 ~ 51588192 (-)
G719970 NA non-coding upstream 58014 51640369 ~ 51640659 (-)
G719981 NA non-coding upstream 99776 51682131 ~ 51686715 (-)
G719992 NA non-coding upstream 124102 51706457 ~ 51706712 (-)
G719151 NA other downstream 621329 50936928 ~ 50939471 (-)
LOC110530011 LOC106568709 other downstream 1671548 49866272 ~ 49937001 (-)
G718489 NA other downstream 1723104 49785674 ~ 49837696 (-)
G716488 NA other downstream 2771838 48788521 ~ 48788962 (-)
G721275 NA other upstream 1178684 52761039 ~ 52761451 (-)
LOC110529122 LOC106568971 other upstream 1880827 53462034 ~ 53478913 (-)
G722459 NA other upstream 1915793 53495804 ~ 53499730 (-)
G722602 NA other upstream 2221088 53803443 ~ 53856065 (-)
G722670 NA other upstream 2343873 53926228 ~ 53927959 (-)

Expression


Co-expression Network