LOC110530062 (LOC106568754)


Basic Information

Item Value
gene id LOC110530062
gene name LOC106568754
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 51813588 ~ 51838600 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612849.2
TCTCTTTTAGGCAAAGGACAAGCCTTTTGAAAGAGTTCCTTTTTTTCTAGGCTCACAATAATTATGGAGCAGCACCACATGGGCTGTGTGAACCTTTGTAGTCTCACGAGCAATCTACCGGTGATCTCCTATCAAAAGCTGACGGATTTACATTACCTGAGCAAAGGTGGGTTCGGAAGCGTGTTCAAGGCACAGCATTCCGATTGGCGGACCACCGTTGCCATCAAGTGCCTGAAATTGGATTCTCCTGTTGGCGAAAGGGAGAGGAATTGCCTGCTGGAGGAGGCAGAAGTGCTCCACAAGGCCAGATTCAACTACATCATCCAGATCTTTGGCGTGTGCAACGAGCCTGAGTTCTTCTGCATCGTCACCGAGTACATGAGCAATGGCTCGCTGGATCAGCTGCTTCACGAGAATAACCTTTACCCCCCGCTGGCCTGGTCGTTGAGGCTGCGTGTCCTGTACGAGATAGCTCTGGGGGTGAACTTCCTACACAACATGACCCCCCCCCTCCTGCACCACGACCTCAAGACACAGAACATTCTGCTGGATGGAGAGTTTCAtatcaagATAGCAGACTTTGGCCTGTCTAAGTGGCACCAGCTGTCGATCAGTAAAGGCTCGGGATCCAAGCCACCTGAGATGGGAGGCACTATCATCTACATGCCCCCAGAGGAGTACGAACCCTCCAAGAACCGCTGTGCAGTCGTCAAACACGACATCTACAGTTACGCTATCATTATGTGGGAGGTGCTATCCAGGAGGATACCATTTGAAGAGGCAACCAACCCCATGCAGGTCATGTTCAGCGTACTGCGTGGGATACGTCCCGACATAGGCCTGGACTGTCTGCCAGGGGACATCCCCAGCAGGGAGACACTCATCAACCTCATGACCTGCGGCTGGACCGCCAACCCTTACGAACGGCCCTGCTTTCTCATGTGTGTGATAGAGCTGGAGCCAATGCTGAGGAGGTTTGATGAAATCGACATCCTGGAGGCCGTGCTGGAGGTCAAGAAGTCAAAGctgatgAGGAGGGCAGGCTGCTACTCTGCCACACCCGTGGCGggtgagaaggggagggaggagaagatttTAAACATTCTGAAGGACAACCCCGGTCCCTGGCAAGGAAGCTCTGACTCTGGTTCTTACTCCTCCCAGGACACGGACATCTCCCAACCGAGCTCCCTCACTAGCACCAATGCTCCACCTTTTAAAGAAGTATCCCTCACGTCGTTCATGTCCCACAACCTGGAGCCCCTCAGAAAGCAGACCCTAGAGGACAACCCCCTCAACGACTACCCCCAGAGTGCCAGGCCGCTGAATAACCTCAATATTCCCCTCAAACCAGGCCTGCCGGAGACGGAGTGTGTGATGCACCTGGACAACCTCACCCTGAAGTCACAGCCATACCAACCACAGCCAGATTTCACCCTGCCATCGAACCCCCTCGGCCCCAGGCTGGGCCCCATGGCATGCTGGATCGCGGCACGTCGCGAGGAAATCGTCTCCAAGATGACGGAGGCCTGCCTGAACCAGAGCCTGGACGCCCTGCTTGCGTGCTCTCTCCTGATGCGCGAGGACTACGAGCTGGTGGTGAACCGGGCCACACGCACTGCCAAGGTCCGCCAGCTCCTTGACACCTGCCACCGTCACAGCGAGGACTTCTGCCGCGTGGTGGTCCGCAAACTCAAGGACAACAAGCAACTGGGCCTGCAGCCATACGCCCCAGAGCTCGGCTCCCTTGTGGCCGCACCAAACACCAGCACACCCCCACTCTCGGTGTCCGACAACAACCCAAGGAATTACTAGGACAGAACTAGTCCAGAGAAGACCAGAGACCCGAAAGACTATAAACTGTAAAAGACTTAGCTCATTGAGCTACTGTAGGTGGTGTAAAAATACCCCACTGTCTCTTAGTCCTGGGTGATGGGGATGATAGGCAACACATGGAAGAAAACTAACTCAAACTGAATATAGACTACCTGAATGTTTTCATTTGCACAATTTTTTTTGAAACGTTTTGctagtgtgccctaatgaatatgaccctgggTTTTTACTGTGAACTTTGACCTTAGTGGGGGATGGTAAAGCCCAGCTGTCTCTCACATTGCTCATGGTGCTACCCACTCACACAGAGCAAAACTGTATGTTGCTACTGTTCATCAAACTGTTGAGCTCTAAGGACtctaaaaacaaaaacacatcatCTTCAGAAACATTCCCGTTCTCTAAAAAGCAGAGGATGGGTTGGGATTGACAATCAAAATCCGTTACTATTTAATCCAGGCTTTGAATAATTatataattaatataattataattatattatGGATTTCATGTCATTTGTCCGGTAAATCATTTTGTTCTCTCAAAACATTCCCTTTGTTCTGAGTGATTGGGGTACGGGCCCTGGAGTCTTGAGTTCTGCTTCTATGCATCCTTCTGTTCTCTCCCCTCGGCACTGTTTTATCCAGAGAAATATATCCAGACAGACTGTAACATCATACTCATCTACAGTATGGCTCTGGCTTTACTCTTATTTTCAGTGGACAGTTTAGACTCATCTGTAGCTCTCCAGGTCCGATAAGATACTCGACTGGAGTTCTGCCGTGTTGAGGTTACTGTGGCTTGGTCTCAACTGGATCAACCCCCATTCCCTTTTGTTTGTCCCCAAAAAAATTGCACTAATATCATTGTATTTTGGGTATTTCTTTACCACTGCCTTTCCGAGCCATGTTTTTATTTCTCTTGTAGACTGTGCACTTTCTGTTCATAGGAGCTTTAGTCGACATAGGATGGGCCAAAGCTGTTGAGGCCTTATCATTTATATGATATGTACATCCCCATCGAGAAGAAAAAGAAATGCACACCTAttaaggcgaggtgctggctagcggattagaaaacttgaaaataaaggagagccgcacactctaggagctcagatgcaaaaaaatgtaatatccgACAGGGTATAATGATCAGGGTATAATCAAACACTGCGAGATGACTCGTTTATATTGTGTCAAAAGACACAcgggtgtctgtaatcatggccaagagtggcctaatatccattggttaattctcaaatattaaaattgcatacaaagaacagcatacaaaaaaACAAATGGATAGAATACGATCATAAATTAATTttagactacacaagcttacaaacaattacaatggcaaagtcacaataatcaggTCTCaatgtagactttgatctgaagccattattgtgactttgccattgtaattggcc

Function

NR:

description
receptor-interacting serine/threonine-protein kinase 2-like

GO: NA

KEGG:

id description
K08846 RIPK2; receptor-interacting serine/threonine-protein kinase 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612849.2 True 3280 mRNA 0.48 11 51813588 51838600

Neighbor

gene id symbol gene type direction distance location
LOC110530061 LOC105030384 coding downstream 8378 51795099 ~ 51805210 (-)
eif4a2 LOC106568752 coding downstream 62141 51742214 ~ 51751447 (-)
LOC118965690 NA coding downstream 62972 51750546 ~ 51750616 (-)
LOC118965691 NA coding downstream 63408 51750110 ~ 51750180 (-)
LOC118965644 NA coding downstream 63769 51749750 ~ 51749819 (-)
LOC110530931 LOC106568756 coding upstream 78286 51916886 ~ 51976908 (-)
LOC110530932 NA coding upstream 153706 51992306 ~ 52006456 (-)
zgc:55943 LOC106568758 coding upstream 173329 52011929 ~ 52019435 (-)
imp3 imp3 coding upstream 185168 52023768 ~ 52025826 (-)
LOC110530068 LOC106568760 coding upstream 209780 52048380 ~ 52053315 (-)
G720112 NA non-coding downstream 49997 51759283 ~ 51763591 (-)
G720009 NA non-coding downstream 91618 51721673 ~ 51721970 (-)
G720003 NA non-coding downstream 96845 51716467 ~ 51716743 (-)
G719994 NA non-coding downstream 105038 51708305 ~ 51708550 (-)
G719993 NA non-coding downstream 105477 51707790 ~ 51708111 (-)
G720399 LOC106568761 non-coding upstream 216630 52055230 ~ 52059713 (-)
G720409 NA non-coding upstream 234165 52072765 ~ 52073121 (-)
G720410 NA non-coding upstream 236569 52075169 ~ 52075471 (-)
G720413 NA non-coding upstream 242942 52081542 ~ 52081769 (-)
G720415 NA non-coding upstream 245301 52083901 ~ 52085468 (-)
LOC110530043 LOC106568739 other downstream 554569 51252355 ~ 51259061 (-)
G719151 NA other downstream 874117 50936928 ~ 50939471 (-)
LOC110530011 LOC106568709 other downstream 1924336 49866272 ~ 49937001 (-)
G718489 NA other downstream 1975892 49785674 ~ 49837696 (-)
G716488 NA other downstream 3024626 48788521 ~ 48788962 (-)
G721275 NA other upstream 922439 52761039 ~ 52761451 (-)
LOC110529122 LOC106568971 other upstream 1624582 53462034 ~ 53478913 (-)
G722459 NA other upstream 1659548 53495804 ~ 53499730 (-)
G722602 NA other upstream 1964843 53803443 ~ 53856065 (-)
G722670 NA other upstream 2087628 53926228 ~ 53927959 (-)

Expression


Co-expression Network