XLOC_025806


Basic Information

Item Value
gene id XLOC_025806
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 57426160 ~ 57480996 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052811
GCAGATAGAGTTGCCTGGGAACAGGGCTGTGTTTATGACGAACTCCTTCAGGCTCAAtgtgaataaGCTGAGATCTGCTCAGACTGAGAAAGCAGGAAAAGCTGCAGCTCCCAAAGTGAAatgacacacagagagagaaagaacgaTGTTTCGAACATCACAGCAAACAAACTCTTCAGTACAGTCACAAAATCATCAACCCCGCAGCACCCGCCACCACATAGAGACCGCCATTCGCTGATTCCATGAAGACGACGAGCGGTCAGACGAACAAGATGGAGGAACATGTAAAATAAACTAGAGTAAAACTCATGAAAAGAcgaaccaaaaaaaataaaaaatgagcctACAGCGGCTGATCACAGAAACGGGACAGAAAGCAAGGCTGATCACCAGAAGCACCTGAGAGCGAGAGAGGAGCGATTTGTGTACATACCTCCTGAGGAAAGACAACAGCCAAAATCAtgggaacaaacaaacaaacaaacgaagaaGAAAAGGGGAAacaaaaaattgaattaaatgagAAATCATCCTCCCCACACGCTGCCTCTCTGACAGAGCAAGTACATATTGGGGTGAAGCTGGTTTTATAGTCGCACTTTCAGACTTTCGCCTTCTTGATGTCATTTCAGAAAAGTGGTCTTTGCTAGCGGAAATTGTATGAGGAGGCAATCACTATTAAAGCACAGCATcgtttacagtcaattaaataggtCTAATGTTGTTTTGAGGTCATACTTGCATGggatttcagagtgaatattcaaaatagcatggtaaacaatatagggacagCG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052811 True 800 lncRNA 0.43 2 57426160 57480996

Neighbor

gene id symbol gene type direction distance location
XLOC_025805 NA coding upstream 102664 57268363 ~ 57323496 (+)
XLOC_025804 fscn2a coding upstream 169085 57234093 ~ 57257075 (+)
XLOC_025803 bahcc1a coding upstream 252119 57038033 ~ 57174041 (+)
XLOC_025802 NA coding upstream 468602 56949955 ~ 56957558 (+)
XLOC_025801 otop2 coding upstream 507718 56905103 ~ 56918442 (+)
XLOC_025808 CT573423.1 coding downstream 155378 57636374 ~ 57641090 (+)
XLOC_025809 NA coding downstream 285628 57766624 ~ 57768666 (+)
XLOC_025810 tmc6a coding downstream 298677 57779673 ~ 57816877 (+)
XLOC_025811 CU571328.1 coding downstream 339917 57820913 ~ 57823547 (+)
XLOC_025812 cenpx coding downstream 344942 57825938 ~ 57830023 (+)
XLOC_025429 BX649540.1 misc upstream 27177124 30248739 ~ 30249036 (+)
XLOC_025799 NA non-coding upstream 603957 56821699 ~ 56822203 (+)
XLOC_025796 CU019632.1 non-coding upstream 803288 56619195 ~ 56622872 (+)
XLOC_025793 NA non-coding upstream 1065510 56358682 ~ 56360650 (+)
XLOC_025791 FP326652.1 non-coding upstream 1318251 56099256 ~ 56107909 (+)
XLOC_025814 NA non-coding downstream 500262 57981258 ~ 57986847 (+)
XLOC_025816 NA non-coding downstream 513382 57994378 ~ 57995547 (+)
XLOC_025822 NA non-coding downstream 706991 58187987 ~ 58192699 (+)

Expression


Co-expression Network