LOC110530083 (LOC106568812)


Basic Information

Item Value
gene id LOC110530083
gene name LOC106568812
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 52465692 ~ 52475757 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612881.2
GCTGCGCAGAGAGTGGTTCAAAATACGTACTCTGCGCTTCCCGTCTCCTCCGCACAAATCAAATCGTTTGCCACGGAAAGAAGGAAATTGAAGAGCTGGTTTACCTTAAACTTGTTCAATGAATTTTGTCTTTACGGGCTAGTAGCTACATTAATCGCGGGGCTTATCTGCAGTTTGCCAAAGCGTTAGGTTTTAATTGTAGAAGGTTGCGAGTGCAAGACAAGGAATTCCATAAATTATATCCCCGTTGAGATGGGGTTGTTTGATTCGATTGTGACGACGGTAATGCAGACAGGAATTAGAATTTGAACATCGTATCCGAGAGGACTTGTCTTAGCTTGGCACCTGAGGAATGATTTGAATCCAATCAAAAAGTCGTCGTTGAATTCCCTGTGATGCGTGTCTTTCAGCAGGTGTCAGATTGGAGATTTAGTTCATTGTAGTGGCTCCAGCTGAGAAGAACCACTCAGGCACTGATACACCAAAGTGATCAGGTTTTCCCTGATCAGAATCCTGCTTTGGAGATGGAGGTGATTCGTCGCTCCTCTGTGTTTGCAGCCGGGGTGATGGAAGCCTTTGACCATTCCCCGTCCGACAAAGAACTGGTGTCCCAGTCCAAGGCACTGTGTAGGGACTACATACACTCTAGGCTCAACATCTATGGGCTGGGCTCGTCCAAAACTCAGGTGGACTCAACTCTTTGTGAGGTGTCTGCCGTGCTTCTCTGTCTCGGTGATGAGCTGGAGTGCATGCGGCCGAGTGTCTACCGGAACGTGGCGAGACAGCTCAACATCTCAGTGGCCATGGAGACCACGGTATCCGATGCCTTTGTTGCCGTGGCAACAGATATATTTTCTGCAGGCATCACATGGGGTAAGGTAGTATCTATGTATGCCGTGGCCGGCGCTCTGGCGGTGGACTGTGTACGTCAGAACCAGCCTGCTACGGTCCAAACCATAGTGGACAGTCTGGGTCAGTTTGTCCGTAAGAACCTGGCCCCTTGGCTGAAGAAACGTGGAGGATGGACCGACATTAAGAAATGTGTGGTGAAATTAGATGCCGTTCCTCAAACCCATTGGCTGTCTCCTGTTGCCGAATCCTGCAAGCACTTTCTGTCAACACTGTAcatctacattatgaaggagccATGAAGGAATTGAGAGAGGAACTGTGGTTGAAAGGCCAAGAGCTCCAAGTCCTTGAATTTGAAGGCTCTGTGCTTCAGATGAACTAGACAGCAGACACCCTCTATCTTTTTGACGGAACACATTTTGTTAAGATTGGTGATGGCCATCTAAACAGTGACTCTCCTTCGTGCAGAGTGCAAGTCACAGTATCACATTTTGTATAATCATCATCAATTTAATCAACAATGACTGCTCTTCTTCTGAAGAGTAATCCCAGTTACCCGGAAGTAAAATTCTCGCGTACGTTTTCACTTCCCGGCCATGAGAGATTATACAAAGTGTAGTCACAGTCAATTTCATATACACATATCTTCAGTTCCGATGATCAACTTTTGCTCAAAGTACTTGTACAAAACCATGTATCTTTCAGTGTTGTAATATAGTTTCCGCTACCGTGTTGCAGTGAGTATGTGTACTGTGGTAGGTGCTCAAATCTCTGAAGTAAGATCCAGTCTGATGATAACTCAAGAATATCATCTGGGACTTTACACTGAAAAATGGACAAAGTGATAGCATCTGTTCTATGGACAAGAATGTGATGCTTTTTGCTGCACCCCTGTGAAGGACATATGAAATGTATGATGAGTAACTACTTTGTTGTGATGGGATGCAACAGTCTATCCAGGCTTTGTCCAAACTGTACAGTGCTGTTGATCTCAGGGGTGCATTCACTAGGAAGCAAACGAGCAGAAACGGGGAGGGATCTACCTTGCattttgtccaataagaaacacttttgttgcaaaatgttttgctacagtgtgcactaATGAGTACGCCCCAGTTGTACCCCTCAATATGTACCATTGAGTACAAAAGACAGAATGATGCCTATTCTATTTCTTTGAGACTTTTTAAATACTATCTTTAACTAATGTATTTTATTGGGAAActgtagtgatgatgatgatgattgaatCTGTATCTTTTTACAGCATCTTTCCTGTGGTCACTTGCAATATttacttaaaggtccaatgcagcaattttttatctcaatatcaaatcatttctggagaACAATTTAGTACCTTATTGtgattattttcaattaaaattgtccAAATGAaacagcttcttagcaaagagcaattccTCAAGCAAAAAATGTTGCTGTCTGgtagtggtctgagtggggaggggaa

Function

NR:

description
bcl-2-related ovarian killer protein homolog A-like

GO:

id name namespace
GO:0042981 regulation of apoptotic process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612881.2 True 2332 mRNA 0.44 5 52465692 52475757

Neighbor

gene id symbol gene type direction distance location
kif1ab NA coding downstream 28824 52379925 ~ 52436868 (-)
LOC110530080 LOC106568811 coding downstream 102574 52352804 ~ 52363118 (-)
LOC110530079 LOC106568768 coding downstream 112997 52346057 ~ 52352695 (-)
aire aire coding downstream 121889 52328150 ~ 52343803 (-)
LOC110530077 LOC106568766 coding downstream 152397 52303487 ~ 52313295 (-)
trnav-cac-8 NA coding upstream 8216 52483973 ~ 52484045 (-)
trnav-aac-10 NA coding upstream 8418 52484175 ~ 52484247 (-)
trnav-cac-9 NA coding upstream 9724 52485481 ~ 52485553 (-)
trnav-aac-11 NA coding upstream 9926 52485683 ~ 52485755 (-)
trnav-cac-10 NA coding upstream 11232 52486989 ~ 52487061 (-)
G721207 LOC106584099 non-coding downstream 6033 52448383 ~ 52459659 (-)
G721203 NA non-coding downstream 56464 52408868 ~ 52409228 (-)
G721149 LOC100136012 non-coding downstream 173347 52291980 ~ 52292345 (-)
G721148 NA non-coding downstream 173772 52291672 ~ 52291920 (-)
G721110 dis3l2 non-coding downstream 220400 52243208 ~ 52245292 (-)
G721235 NA non-coding upstream 7765 52483522 ~ 52490403 (-)
G721236 NA non-coding upstream 8300 52484057 ~ 52591956 (-)
G721237 NA non-coding upstream 9852 52485609 ~ 52538339 (-)
trnav-cac-22 NA non-coding upstream 27932 52503689 ~ 52600136 (-)
G721243 NA non-coding upstream 52646 52528403 ~ 52589826 (-)
LOC110530043 LOC106568739 other downstream 1206673 51252355 ~ 51259061 (-)
G719151 NA other downstream 1526221 50936928 ~ 50939471 (-)
LOC110530011 LOC106568709 other downstream 2576440 49866272 ~ 49937001 (-)
G718489 NA other downstream 2627996 49785674 ~ 49837696 (-)
G716488 NA other downstream 3676730 48788521 ~ 48788962 (-)
G721275 NA other upstream 285282 52761039 ~ 52761451 (-)
LOC110529122 LOC106568971 other upstream 987425 53462034 ~ 53478913 (-)
G722459 NA other upstream 1022391 53495804 ~ 53499730 (-)
G722602 NA other upstream 1327686 53803443 ~ 53856065 (-)
G722670 NA other upstream 1450471 53926228 ~ 53927959 (-)

Expression


Co-expression Network