ocel1 (LOC106568960)


Basic Information

Item Value
gene id ocel1
gene name LOC106568960
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 53806663 ~ 53812192 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612947.2
TCTGCTTCCCTCTCAGCTCAACAGCCTGCAATAACAAAACTGAGTCACCTAAGAAGGTTTGGCTGGGCCTGCTGTAGAGGCATCCATTTTGAGAAGGGTTTTTGCCTCACAGCACTCAAATGTCTGCTAAACTCATAACTGGCCAGTGTGGAGCTTGCCCTTAGCCACAACAAGTTCCTCTATGACAAGAAATTATATCTTTCTTCCATCCTCAATGATTAACTAAACCCAGAGCCCCCTTACTGGATATCAGCCCGTAGTATGAAAAGCTGGAAGAAGATATTCAAGAGAGGAGACCCGGAGAGTGTGGATGGGAACTCCTCTTTGCAGAAAAACTCCTTGAACAACGCCCCGCTAGAGCTAACACCTCAGAGGGCCTTAGATGACGACCTTTCAGATGACGCAAACTCCACTGCCCACTCATCCAGCACTCCCCCATATGTACAAGGAGTGGGGGGTGGTGGGGACGAGGGGACCCTTAAGGACAGGTTGAGAACTCTCCTCCCCCAATCATGGGGCAGTATTCTCCAGAAATGGAGCAATGGGGATGCTGACTCTGACCTGGGCTCCGCAGGGATCAAGATTGTGCCCAATGGGACCAGGGTGAGTCCACCTGTCAGTCCTATACTGGAGAGGAGGTACTGGGACACTCAGGACTCACTGGGGACCTCCAGCAAGAGTTCCCATAGGCCCTTGTTGAGGGACGTTCCTATAGACAATGACCTACTCCATTATCTTCCAGAGGAATCAGAGCTGACCAGTATCCATCCAGCTGAGTACTATGCTGAGAAGGTGGAGGTCTACAAGCTGAAGTACTCCTATATGAAATCATGGCCTGGGTTACTGAGACTCCTGGCTGGGTTTGAACTTCTCTTTGGCGGTATGGTCCTTGCCTGTGTCTGTGCCTACATCCACAAGGACAGTGAGTGGTCGAACTCCTATGGACTGTACAATGGTGCGTATAACAATGGATATGGCACATCGGGGAAGTCCTATAAGGGACCTATGACTCTATTCGTGATAGCGGTGGTTGGGGTGGCGTGGATTGTAACCATCCTCCTACTGGTAATAGGGCTGACTATGTACTACCGTACCATCCTCCTGGACTCACCCTGGTGGCCTCTCACTGAAGGCGTCATCAACGTcgccctgttcctcctctacATGGCTGCTGGTATCGTGTACCTGAATGACCTCAACCGTGGGGGTTTGTGTTACATGACTATAGGTATTAACCCCATAACGTCCAGCCTGTGTCGGGTGGACGGGGGCCAGATGGCTGGCACGGCTTTCATCTTCATCAACATGCTGATGTACCTCATCAGCTTCCTGGTGTGTCTGAAGATGTGGAGGCACGAGGCCACCCGCAGGGAGATGGAGTTCTTTGAGAACCAGGAGAATCTGAGGCCCATCCCTTTGGCCCAGACCAAATCTCCCAATCCGCAGACCAAGAGGATTGTGTTTGAGGATGAGATGGACAGCTCAATGAGGGCAACCAAACTCCTCCACGTCACAGACTTTCAGCAAGAGGAGCCAGGCAGCCGGAACAGAGCCATCCCCACAGGGTACGCCCAGAAGCCCAGAGTCATCGCCGATTATGTAATGAAGTATCCAGAAATCTCCTCTTTGGAGGATAGGGAGAAATACAAAGCTGTCTTCAACGACCAGTATCAGGAGTACAAGGACCTTCACAAAGACATCAGTGAGACCCTCGTGAAGTTCAGAGAGCTGGATGCCATGATGAGTAAACTCCTCAAAGATGGCAACAGTCATGAGGAACAGAAGAGAATCCAACGGATTTTGAAGAAGTACGAGCAAAAAAAGAGTGACCCTGCCTTCCTGGAGAAGAAGGAACGATGTGACTATCTGAAAGCTAAATTAAGCCACATCAAGAACAGGATCCGCAATTTCGACCAAGACACCATGGCAAAGGGTCGGACGTGAAGAAATAGCACGTACACAGAGGAAACAAAGGGGCCATTATTATTCTGTTCCTGTCACGTCTTCTCTGTGAGACTGTTATTTCAGCACTAATTGTGTTTTTGGCGTGTTACTTAAGTAGGTTTCAGTAAATGGCTGTACAAATCAGTAAACTGTGtgttgttacattatagcctgcAACACTTTTTGTGCTTACTGTAAAGATGACTTTCCCACTAATATTGTGTGTGAGTTTCAGTCATGAAGTGAATGACCTCGTAAACTCATAAACGGAGCGCAGTTGTGTACATACCTTTGGACTTTTGTGAACAATGCTAACAGGGTCAATTCCGATTGCATCGGCAAGCATTGCATTTACACTTGTAGGCTTACAGGGCAATACACTATCAAATCCTTGGAGAGTTTTTCATATGAAATTTAAAATATGAAATGCTAAAAGGGCAGTCGAGAACCAGCAATCATTTTGAAGCTGTTACACAGTAGGCTAATGACAtgccccagctagcacatttgattccttggaagttgtgggaatgtatgtttttggtttcacat
>XR_002474481.2
AGCTCTGCTTCCCTCTCAGCTCAACAGCCTGCAATAACAAAACTGAGTCACCTAAGAAGGTTTGGCTGGGCCTGCTGTAGAGGCATCCATTTTGAGAAGGGTTTTTGCCTCACAGCACTCAAATGTCTGCTAAACTCATAACTGGCCAGTGTGGAGCTTGCCCTTAGCCACAACAAGTTCCTCTATGACAAGAAATTATATCTTTCTTCCATCCTCAATGATTAACTAAACCCAGAGCCCCCTTACTGGATATCAGCCCGTAGTATGAAAAGCTGGAAGAAGATATTCAAGAGAGGAGACCCGGAGAGTGTGGATGGGAACTCCTCTTTGCAGAAAAACTCCTTGAACAACGCCCCGCTAGAGCTAACACCTCAGAGGGCCTTAGATGACGACCTTTCAGATGACGCAAACTCCACTGCCCACTCATCCAGCACTCCCCCATATGTACAAGGAGTGGGGGGTGGTGGGGACGAGGGGACCCTTAAGGACAGGTTGAGAACTCTCCTCCCCCAATCATGGGGCAGTATTCTCCAGAAATGGAGCAATGGGGATGCTGACTCTGACCTGGGCTCCGCAGGGATCAAGATTGTGCCCAATGGGACCAGGGTGAGTCCACCTGTCAGTCCTATACTGGAGAGGAGGTACTGGGACACTCAGGACTCACTGGGGACCTCCAGCAAGAGTTCCCATAGGCCCTTGTTGAGGGACGTTCCTATAGACAATGACCTACTCCATTATCTTCCAGAGGAATCAGAGCTGACCAGTATCCATCCAGCTGAGTACTATGCTGAGAAGGTGGAGGTCTACAAGCTGAAGTACTCCTATATGAAATCATGGCCTGGGTTACTGAGACTCCTGGCTGGGTTTGAACTTCTCTTTGGCGGTATGGTCCTTGCCTGTGTCTGTGCCTACATCCACAAGGACAGTGAGTGGTCGAACTCCTATGGACTGTACAATGGTGCGTATAACAATGGATATGGCACATCGGGGAAGTCCTATAAGGGACCTATGACTCTATTCGTGATAGCGGTGGTTGGGGTGGCGTGGATTGTAACCATCCTCCTACTGGTAATAGGGCTGACTATGTACTACCGTACCATCCTCCTGGACTCACCCTGGTGGCCTCTCACTGAAGGCGTCATCAACGTcgccctgttcctcctctacATGGCTGCTGGTATCGTGTACCTGAATGACCTCAACCGTGGGGGTTTGTGTTACATGACTATAGGTATTAACCCCATAACGTCCAGCCTGTGTCGGGTGGACGGGGGCCAGATGGCTGGCACGGCTTTCATCTTCATCAACATGCTGATGTACCTCATCAGCTTCCTGGTGTGTCTGAAGATGTGGAGGCACGAGGCCACCCGCAGGGAGATGGAGTTCTTTGAGAACCAGGAGAATCTGAGGCCCATCCCTTTGGCCCAGACCAAATCTCCCAATCCGCAGACCAAGAGGATTGTGTTTGAGGATGAGATGGACAGCTCAATGAGGGCAACCAAACTCCTCCACGTCACAGACTTTCAGCAAGAGGAGCCAGGCAGCCGGAACAGAGCCATCCCCACAGGGTACGCCCAGAAGCCCAGAGTCATCGCCGATTATGTAATGTGAGTGAGAGGACCTGTGCCTAATATCCTGAGACAGATTTTGAGCAAGGATGACCGGCTCTCACTTAAGCTGAGGAAGTATCCAGAAATCTCCTCTTTGGAGGATAGGGAGAAATACAAAGCTGTCTTCAACGACCAGTATCAGGAGTACAAGGACCTTCACAAAGACATCAGTGAGACCCTCGTG

Function

NR:

description
MARVEL domain-containing protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612947.2 False 2496 mRNA 0.48 6 53806663 53812189
XR_002474481.2 True 1794 mRNA 0.51 4 53808067 53812192

Neighbor

gene id symbol gene type direction distance location
plvapa LOC106568963 coding downstream 77992 53722172 ~ 53728671 (-)
LOC110530116 tm16h coding downstream 94429 53681608 ~ 53712234 (-)
trnak-cuu-2 NA coding downstream 109963 53696628 ~ 53696700 (-)
LOC110530114 LOC106568966 coding downstream 146657 53635788 ~ 53709367 (-)
LOC110530113 LOC106598949 coding downstream 171071 53599635 ~ 53635592 (-)
LOC110530934 LOC106568959 coding upstream 6514 53818706 ~ 53880785 (-)
insl3 NA coding upstream 102628 53914820 ~ 53917617 (-)
LOC110530121 LOC106568956 coding upstream 153805 53965997 ~ 53995304 (-)
LOC110530123 rps15 coding upstream 188937 54001129 ~ 54003188 (-)
LOC118965682 NA coding upstream 190242 54002434 ~ 54002567 (-)
G722523 NA non-coding downstream 126668 53677925 ~ 53679995 (-)
G722488 NA non-coding downstream 210890 53595556 ~ 53595773 (-)
LOC118965526 NA non-coding downstream 272744 53527596 ~ 53533919 (-)
G722459 NA non-coding downstream 309236 53495804 ~ 53499730 (-)
G722612 NA non-coding upstream 16487 53828679 ~ 53829059 (-)
G722659 NA non-coding upstream 92956 53905148 ~ 53905462 (-)
G722686 NA non-coding upstream 132402 53944594 ~ 53944946 (-)
G722694 NA non-coding upstream 140003 53952195 ~ 53952400 (-)
LOC110529122 LOC106568971 other downstream 342899 53462034 ~ 53478913 (-)
G721275 NA other downstream 1045212 52761039 ~ 52761451 (-)
LOC110530043 LOC106568739 other downstream 2547644 51252355 ~ 51259061 (-)
G719151 NA other downstream 2867192 50936928 ~ 50939471 (-)
G722670 NA other upstream 114036 53926228 ~ 53927959 (-)
G722761 NA other upstream 312187 54124379 ~ 54139341 (-)
G722854 NA other upstream 438922 54251114 ~ 54251546 (-)
G722864 LOC106581475 other upstream 469493 54281685 ~ 54281978 (-)
G723955 NA other upstream 1565089 55377281 ~ 55377776 (-)

Expression


Co-expression Network