cnn2 (cnn2)


Basic Information

Item Value
gene id cnn2
gene name cnn2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 54008434 ~ 54014434 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036985681.1
GTATAAACGTTTTTTATTGGTTGCAAGAGAATTTCTTAAAAGGAAGTATTTAGTTTACTCTGGAGTTAACTggaagagaaaggaaaggaaactGATACAAAAGTATCCATACGAAAAACAAAGTACTCCTTTTATAATAATGTCTGGCTCATCATTTAACAGAGGTCCTGCCTATGGGTTTTCTGCGGAAGTCAAAAGCAAGatTGCCGGAAAGTATGACCCCCAGAGAGAGGATGAGCTAAGGGTCTGGATCGAGGATGTGACGGGATGTGTTATTGGGGAGGACTTCCAGAAAGGCCTGAAAAATGGTGTCATCCTGTGCGAacTGATCAACAAACTTCAACCTGGCTCTGTGAAAAAGATCAACTCGTCCACCATGAATTGGCATCAGCTGGAGAACATCACCAACTTCATCAAATCCATCCAAACGTACGGCCTGAAGCCCCATGATATCTTTGAGGCCAATGACCTCTTTGAGAGTGGGAACATGACCCAGGTCCAGAGCACCCTGTTGTCTCTCGCTGGCACGGCCAAGACCAAGGGCTGCCAGTCCCGAGTGGACATTGGGGTGAAGTACGCAGACAAACAGGAGAGACTATTCGACGAGGAGAAGATGAAGGCCGGACATTGTGTCATTGGACTGCAGATGGGGACGAATAAGTGTGCCAGCCAGGCGGGCATGAATGCATACGGCACCAGGAGGCACCTTTACGACCCCAAGGCTCACATCCTGCCCCCCATGGACAACTCTACCATCAGTCTGCAAATGGGCACCAACAAGGGGGCCAGTCAGGCTGGCATGACCGCTCCAGGAACCCGCCGCGCCATCTATGACCAGAAGCTGGGCACAGACAAGTGTGACAACAGCACCATGTCGCTGCAGATGGGCTCCAACGCAGGCGCCAACCAGAGCGGGCAGAACTTTGGCCTGGGTCGTCAGATCTACGACGCCAAGTACTGCCCCAAGAATGAGGAGGAGCAGAACGGGGCCGGGGCCGACTACCAAGACGAGGGTTACCAAGAATACAAAGATGACACGGTGCCGGTGTACCAAGAAGAGGGGACGGATTATTAAAAGTGGGTTGTGCTTGTTGAAGATAGTAGAAACCTCAATGAAGGTGTTATCAGTTATTCATTACATAGGATTTTCCACCTTTTGGGTGATCTCCTTCTGGTATTGGACAATAGTTCCCTGTTACCCTCATGAATTACTGGTTAGGAGCAATATACACATATCTCACATGTACTATATATTagtatgtttatatatatatatatatatatatgttgaaatGGCTATACTTATGTGTTTTTAAAGTGCAACTGCTAAAGCCAGTGCTTGTCTGAGCTGTGATTAGCTTTTTTTTCCTCACAGGGAATTTTGTAAAGTGCCAAAGCCCCCTTGCCAGTTTCCCCTATCTTAATGTAAGTAGGTAGATTTCAAAGGGATGGCATTTATGCCAAGGATTTTCATATACAAATATTGCCTAGAATCCATCTAAAATGGGATTAAAAATCATCTGTGTTGAGACGGAAAAAGAAAGCTCTTAAACTTTCATCGAaatgtagatttaaaaaaaaaatatatatatatataatatttcagTTCAAAAAATGTATTGTTCCATAGTTGGAATTTACCCATCCTTGTATTTATATGGCTAAAAGTCATATTGTTAATGTAAACTATTTACATTTCCTTAACTGATGCGAATAATAATGTGAATTTGTTTAACTGTTTGTATCCATTCAGTACTTTTACTTGGTAATATAAAAGACAAGATGTTTTGTGGTATCTGTTGAGAATGAAAAAATAACGTCTTTAATGAGACAGTGGTTTGTTCACACATCTCCCATTCTGTTAACTTTTTATGTATGCTGAGTACTGATCATataattaaaatatttttttttttaggaggaaatatttattttgtttgcaTAATCAGAACTGGAGCCAAGGTTGTTTTCTTTGGGTACCGTTAGAgtattttggagaaaaaaaaaaaactttcaggCTTTCAACATTCCAAGCTGGATACTGGATTCATTTTGTCAGGTGTCTTCATTGTTTAATGTTTTACTGGATTCACTGATGACTGAAAAGAGGACCAGACTTATTTTGAACTCTAACATTCAAAGTGATTATTTTTatatttctgtttaaaaatgttttttttttttaaagttttttttttacctagacTGAAGGAAAATGAGCTTTTACTACCTTTGGTATTATATACATTTCTTGTGCTCTGCTTCGAGTCCATCTTTTCAATATAAATGAAAACATCTAACGTTTGGAAGTGTGTGCATGACTAAAGTGAAATAAAGATGGACATTGAATACCAA

Function

symbol description
cnn2 Predicted to enable actin binding activity and calmodulin binding activity. Acts upstream of or within regulation of MAPK cascade; regulation of blood vessel endothelial cell migration; and response to steroid hormone. Predicted to be active in cytoskeleton. Is expressed in several structures, including central nervous system; digestive system; mesoderm; periderm; and vasculature. Orthologous to human CNN2 (calponin 2).

NR:

description
calponin-2-like

GO:

id name namespace
GO:0031032 actomyosin structure organization biological_process
GO:0043408 regulation of MAPK cascade biological_process
GO:0043535 regulation of blood vessel endothelial cell migration biological_process
GO:0003779 actin binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036985681.1 True 2355 mRNA 0.40 7 54008434 54014434

Neighbor

gene id symbol gene type direction distance location
LOC110530123 rps15 coding downstream 5246 54001129 ~ 54003188 (-)
LOC118965682 NA coding downstream 5867 54002434 ~ 54002567 (-)
LOC110530121 LOC106568956 coding downstream 13130 53965997 ~ 53995304 (-)
insl3 NA coding downstream 90817 53914820 ~ 53917617 (-)
LOC110530934 LOC106568959 coding downstream 127649 53818706 ~ 53880785 (-)
crsp7 LOC106568954 coding upstream 10302 54024736 ~ 54039572 (-)
LOC110530125 LOC106568953 coding upstream 43688 54058122 ~ 54105410 (-)
LOC110530126 LOC106569003 coding upstream 112634 54127068 ~ 54131739 (-)
LOC110530134 LOC106568945 coding upstream 359799 54374233 ~ 54377574 (-)
LOC110530139 LOC100194659 coding upstream 428696 54443130 ~ 54445222 (-)
G722699 NA non-coding downstream 43027 53965176 ~ 53965407 (-)
G722696 NA non-coding downstream 54005 53954197 ~ 53954429 (-)
G722694 NA non-coding downstream 56034 53952195 ~ 53952400 (-)
G722686 NA non-coding downstream 63488 53944594 ~ 53944946 (-)
G722659 NA non-coding downstream 102972 53905148 ~ 53905462 (-)
G722728 NA non-coding upstream 18857 54033291 ~ 54034722 (-)
G722805 LOC106568951 non-coding upstream 166008 54180442 ~ 54185532 (-)
G722812 NA non-coding upstream 173635 54188069 ~ 54189214 (-)
G722814 NA non-coding upstream 174958 54189392 ~ 54243058 (-)
G722773 LOC106568951 non-coding upstream 190254 54204688 ~ 54207815 (-)
G722670 NA other downstream 80475 53926228 ~ 53927959 (-)
G722602 NA other downstream 152369 53803443 ~ 53856065 (-)
G722459 NA other downstream 508704 53495804 ~ 53499730 (-)
LOC110529122 LOC106568971 other downstream 544670 53462034 ~ 53478913 (-)
G721275 NA other downstream 1246983 52761039 ~ 52761451 (-)
G722761 NA other upstream 109945 54124379 ~ 54139341 (-)
G722854 NA other upstream 236680 54251114 ~ 54251546 (-)
G722864 LOC106581475 other upstream 267251 54281685 ~ 54281978 (-)
G723955 NA other upstream 1362847 55377281 ~ 55377776 (-)
G723966 NA other upstream 1382190 55396624 ~ 55396885 (-)

Expression


Co-expression Network