crsp7 (LOC106568954)


Basic Information

Item Value
gene id crsp7
gene name LOC106568954
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 54024736 ~ 54039572 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612954.2
TGATGAGTCCGCTGGGGGGCCAAATTACCATATTGCTTACGCTGTCAAATCCTCTCGGATCTCCACAAGCGCATAGGGTGTAGGACTGAGGTGTCCATTTGGTATTGATCTCATGTCTcctccctaacaatgggagtcgttgccCCAAAAGCGGGAAGACAGGCAAGCGACAAGTTTAGGTCCAAAATACGCCCTTAGAAACGCATTGGGCTTGTTTTGGACCGAGTGAAACCAAATATTGTTCTGTGGTGAAACCTCTCGcatcgcctcttcctctctgacacgGCCAAGTATTGCATCCCATAATGCAATAGGAGGCCGTTGAGATCCAGCAGCTGGTGGCCTGTGAGTGTCTACAAGTACCACAGTATTCGTTGTTGGAGGATTCCTCCCCCGTCTGCCGGATCGCACCGAACAGGCAATGACAACGGCCTCAGCAACTCCGCAGCAGATGAGAGACCGGCTGCTGCAGGCCATCGATAGTCGTAGCAATATTCACAATATGGTGGCAGTATTAGAAGTTATCACATACTTGGAGAAATTCCCTATCACCAAAGAAGCACTTGAGGAAACCCGATTGGGGAAACTGATCAATGACGTGAGGAAGAAGACCAAGGATAAAGACCTTGCCAAGCGTGCCAAGAAGCTTTTGCGGAGCTGGCAGAAATTGATCGACCCAGGGCAAAATGAGACTCCATCGTGGGGGGCAGTAAGTGTCTCGGGCTCTGCCAATGGCAGTGCCCATCCCTGTCGGACTGACGTTCCACCCCCTGACATATCCCTGGCAGGCAAAGGTGTCCAAGAGGTCAAAACCAGAAATGACGTCCACAACACCTACTCGCCCAAAGTGGAGAAGTCAAGCAGCAGGAAGCGTAGAGGGGAGCAAAAGGACAGTGTGCACTTACCGGCCAAAACTTCCAAGATGTCCCCCAACGAGCAGATGCACAACTCCACTCCGCCGCCACCTCCCACAAATGGGATTGCAGGTAACCCTGAGGCTCCCCAAGACCTAGAGGCTACACCTTCGCCAGACAGGGCCCGGACAAAGCACATTGAGAATGAAAAACACAGTGGAATCCCTGTCAATGCTGTCAAACCTCACCCCAGCTCCCCGGGCCTCGCCAAACTTCCTAGCACTTCCTCTTTACTCAAGACTGCTGTGTTGCAGCAGCAAGCAAGGTTGGACGAAGGAGGGGGGCAATATCTGACCAAAAGCCCCCGCTGCCTTTCAAGTCCACGGACTATGAAGCAAGAGACTATGTCCAAGCACTCTTCAACATATGCACCAAAAGGGACTATCCCAAGCCCAGCTCGGAGTCCTCGCTTGCCTTCGTCCCAGCCTTTAACGTCCCCAGCCCAAGTGTCTCATGTGAATGGGCCGCCACCCCCTGCCCATAGGGCCTCACTGCACTGGCCTGGCTCCTCAGAGGCCACTACCAATCCCCCACACAGCACTGGAACACTGGAACCCCCGCCTGTCTTCCTTCCCACCACCCATCCCGCCCCACAAAACTCTGAGTGTGCGGAACTCCACAGACCCACCCCCTCTGTAGTGGTGGTCAAGGCTGAGGCAGAAGTCTCTGCCTCCAGCTCGGACCGCAAAAAGAGGAAGAAGTACAGGTCCAGGGACTACTCTGTCAACCTGCAGGGGCAGGACACAGAGGACAAAACAAAGCCTGTGAGGTTAAAAGAACGCAGGCTAACGTTTGACCCTGTGACTGGACAGATCAAGTCCATGGTACATAAAGAACCCTGTCAGGTGGAGGAACCCCCAATGCCACCTCCCCCTAATCCCCAGCAGAGAACTGATCTGCATCCACAGCAGCCTCCCGCTCCCACCCCTAGCCCCTTCCAACAGACTAACTGGAAAGAGCTGTCCCGAAACGAGATCATCCAGTCCTACCTAAACCTTCAGAGCAACGTGCTCACATCCTCGAGGGTCCAGGCCCCCGGCGCGCACTTTTTCATGTCAGAATACCTGAAACGGGAGGAGAGTGATCTCagggaggcgaggcgaggagtCCATGTCTTGCAGCTGGACAGCTCGGTAACGGACACACCTGGAGTGAGCCGAGAGGTGACCGACAAGGACCTCCACAGAGTACATACGGAGCACTGGCAAGGGGTAAATGGTTGTTACGACACCAAGGGCACTTGGTTCGACTGGACGGAGTGTATATCGTTGGACCCACATGGGGACGAGAGCAAACTGAACATCCTGCCATATATTTGCCTAGACTGAGATGGGGTGTCTGTCCCAAGTTTGTTAAAGGGCTGTTTCAGTTCTGTTTTTCAAAAATAAAAAGTTGCAGGAAAGATGTGCCCGTTTGCAGAGTGCTGCTACTAACAATTAATTGCAAACTGGGGTTCTAGTGTAGGGTTGGCTAGAGTTTAGCTTTCCAGCTATGTGCTCAGAGGGTGTTGAAAGCGTTCATCTAGCACAGTTAAAGCCGAACGTGTCCAGCGAGTGGAGTACTGATACCTATTTGGGAGTTACAAGAAGCTTTATGTGACATATacaaaaataaattatacaatttCTTATCATGTATGCAtctatttatttgacctttttcagttttttttataggTTTATGGAAACGATGTGCAAAACCTGTAGAGCTTTTCTGTTTGCATCACATACTGTTGACCTGTTCTGCAATGCAAAAGAGGCATAACATTGTTTTACACATTCTTTTGTTTTTGGTTGGCCGTTACATGTTAGCGATCCAACATTCCATACTCCAcccctcatcttctctcctcaccACTCTGTTCTGATGTACACATGCCATCGAGCGTTTCTTCCCGGAGGAAGTTTAACAAAAAAATGTGCCTCCTATTGTTCAATCAACAAAGTATTTTAGAAGCCATCTTTGTTTTTCCATTTACTTATTCCCAACAATCCTCACCCAGGCAGAAAATGTTGAAACAGGGGGTACTAATACAACTGTGAGGATAAGGTGTTTGTATGCTGGAAATATACTTGTTCACATTCCTTTTAACTATCGTTTTGGCTTATGAAATTGAATCACGAGACTTTCAGAGTTGAACAGCCTTAATGAATATACAGAAATGAGAGCTTTGTATTTAGTTTGCAGAAGCAGGCATCTTCTGTAATTTCATCATTTGCATTAAGGTATGTGTAGATACAAACAAAACACCTGCaaggtccacaatttttttttttcaattttcctCCAATCTTTCATGGGTTTGTATTTCAGGAATGTTCTACTCATTGAGAAGCGTGCGTGATGGTAAATGAACAAGTGTTGTTTCTTTTGCTATTTTGTTGAAAACTACAAACTTAAGAGAGCGCATTCTTCACCTTTTCCATGTGACAATTTGGAGAAGTCGTTTTTTAAATTGTTGTTCTCGTCTTGCCACGGTTCTCCACATATGACATGACTTCAGATGGGGTAAGGTCAGACTGTGCGCCGCTATATTCATCCCTACCAATGTGCCTTTTTGATGTCAAATCTGGATTCGCTTTCGCATAACACTCCTGTCCTTGGaactaggcttgtgtgtggcaATTCCATGTCTGATGATGCTGGACTATGCaccatctttttttttttctaagCAGTGGTCCTTAGTGAACACTGATCCAGAATGGGTAAATTGCAGACAATGAGGCATCACTCAAACACAGCTCGCAATAACGAAATGCTAAAGATGATTGATGTGGGTCTGGTCAGTTTGACTGGGACATCTTTATTTGTTCAGTGTTTAACATCTCATTTGTTTGAAAAATAAAGTGATCTAAACCCTGTGCACAGTTTTCTCATTTGCGATAAGACTTCATTCTTACGCAATATAAACCCAGATGTTTTTGTGTTGTATTCATGATGGGGTTATTAACAGGTCAATGTTTGCATTAATATGGTACATACAATGtttgtctacagtatataggtaCATTACTCGTTTGGTTTCCATTGTGTTCAGTGAGTCCTCATGGGGGAGCACTTGGCTGTTTTTTGAAGTAATATGGAAATTCAAAAGTTTTAAATATGGTGTTGATTGGGTTCTGCGGTTAAACTGTGTCGAACATCACTTACAAAAAAGTGCAGTATACTGCAAATACTGTGTCCAAAATGCAGTATAGCTGCAGTTCAAATGCAGTACACTGTAGTTATTCTGCAATTACGGTGTCCAAAATACCTCAGTCGACTGCAGATATTGCAGTTTCAAACCGGCATTCTTATTTTGAGAATTGTTTTGTATCTTTGAATTGCAAAGGGGTGTCTTTCACTTCCTTGAGTGGTTTTGTCTTCATTGTTATGACAAACTGCAACTATCAACACACTT
>XM_021612953.2
ATGATGAGTCCGCTGGGGGGCCAAATTACCATATTGCTTACGCTGTCAAATCCTCTCGGATCTCCACAAGCGCATAGGGTGTAGGACTGAGGTGTCCATTTGGTATTGATCTCATGTCTcctccctaacaatgggagtcgttgccCCAAAAGCGGGAAGACAGGCAAGCGACAAGTTTAGGTCCAAAATACGCCCTTAGAAACGCATTGGGCTTGTTTTGGACCGAGTGAAACCAAATATTGTTCTGTGGTGAAACCTCTCGcatcgcctcttcctctctgacacgGCCAAGTATTGCATCCCATAATGCAATAGGAGGCCGTTGAGATCCAGCAGCTGGTGGCCTGTGAGTGTCTACAAGTACCACAGTATTCGTTGTTGGAGGATTCCTCCCCCGTCTGCCGGATCGCACCGAACAGGCAATGACAACGGCCTCAGCAACTCCGCAGCAGATGAGAGACCGGCTGCTGCAGGCCATCGATAGTCGTAGCAATCAGATTCACAATATGGTGGCAGTATTAGAAGTTATCACATACTTGGAGAAATTCCCTATCACCAAAGAAGCACTTGAGGAAACCCGATTGGGGAAACTGATCAATGACGTGAGGAAGAAGACCAAGGATAAAGACCTTGCCAAGCGTGCCAAGAAGCTTTTGCGGAGCTGGCAGAAATTGATCGACCCAGGGCAAAATGAGACTCCATCGTGGGGGGCAGTAAGTGTCTCGGGCTCTGCCAATGGCAGTGCCCATCCCTGTCGGACTGACGTTCCACCCCCTGACATATCCCTGGCAGGCAAAGGTGTCCAAGAGGTCAAAACCAGAAATGACGTCCACAACACCTACTCGCCCAAAGTGGAGAAGTCAAGCAGCAGGAAGCGTAGAGGGGAGCAAAAGGACAGTGTGCACTTACCGGCCAAAACTTCCAAGATGTCCCCCAACGAGCAGATGCACAACTCCACTCCGCCGCCACCTCCCACAAATGGGATTGCAGGTAACCCTGAGGCTCCCCAAGACCTAGAGGCTACACCTTCGCCAGACAGGGCCCGGACAAAGCACATTGAGAATGAAAAACACAGTGGAATCCCTGTCAATGCTGTCAAACCTCACCCCAGCTCCCCGGGCCTCGCCAAACTTCCTAGCACTTCCTCTTTACTCAAGACTGCTGTGTTGCAGCAGCAAGCAAGGTTGGACGAAGGAGGGGGGCAATATCTGACCAAAAGCCCCCGCTGCCTTTCAAGTCCACGGACTATGAAGCAAGAGACTATGTCCAAGCACTCTTCAACATATGCACCAAAAGGGACTATCCCAAGCCCAGCTCGGAGTCCTCGCTTGCCTTCGTCCCAGCCTTTAACGTCCCCAGCCCAAGTGTCTCATGTGAATGGGCCGCCACCCCCTGCCCATAGGGCCTCACTGCACTGGCCTGGCTCCTCAGAGGCCACTACCAATCCCCCACACAGCACTGGAACACTGGAACCCCCGCCTGTCTTCCTTCCCACCACCCATCCCGCCCCACAAAACTCTGAGTGTGCGGAACTCCACAGACCCACCCCCTCTGTAGTGGTGGTCAAGGCTGAGGCAGAAGTCTCTGCCTCCAGCTCGGACCGCAAAAAGAGGAAGAAGTACAGGTCCAGGGACTACTCTGTCAACCTGCAGGGGCAGGACACAGAGGACAAAACAAAGCCTGTGAGGTTAAAAGAACGCAGGCTAACGTTTGACCCTGTGACTGGACAGATCAAGTCCATGGTACATAAAGAACCCTGTCAGGTGGAGGAACCCCCAATGCCACCTCCCCCTAATCCCCAGCAGAGAACTGATCTGCATCCACAGCAGCCTCCCGCTCCCACCCCTAGCCCCTTCCAACAGACTAACTGGAAAGAGCTGTCCCGAAACGAGATCATCCAGTCCTACCTAAACCTTCAGAGCAACGTGCTCACATCCTCGAGGGTCCAGGCCCCCGGCGCGCACTTTTTCATGTCAGAATACCTGAAACGGGAGGAGAGTGATCTCagggaggcgaggcgaggagtCCATGTCTTGCAGCTGGACAGCTCGGTAACGGACACACCTGGAGTGAGCCGAGAGGTGACCGACAAGGACCTCCACAGAGTACATACGGAGCACTGGCAAGGGGTAAATGGTTGTTACGACACCAAGGGCACTTGGTTCGACTGGACGGAGTGTATATCGTTGGACCCACATGGGGACGAGAGCAAACTGAACATCCTGCCATATATTTGCCTAGACTGAGATGGGGTGTCTGTCCCAAGTTTGTTAAAGGGCTGTTTCAGTTCTGTTTTTCAAAAATAAAAAGTTGCAGGAAAGATGTGCCCGTTTGCAGAGTGCTGCTACTAACAATTAATTGCAAACTGGGGTTCTAGTGTAGGGTTGGCTAGAGTTTAGCTTTCCAGCTATGTGCTCAGAGGGTGTTGAAAGCGTTCATCTAGCACAGTTAAAGCCGAACGTGTCCAGCGAGTGGAGTACTGATACCTATTTGGGAGTTACAAGAAGCTTTATGTGACATATacaaaaataaattatacaatttCTTATCATGTATGCAtctatttatttgacctttttcagttttttttataggTTTATGGAAACGATGTGCAAAACCTGTAGAGCTTTTCTGTTTGCATCACATACTGTTGACCTGTTCTGCAATGCAAAAGAGGCATAACATTGTTTTACACATTCTTTTGTTTTTGGTTGGCCGTTACATGTTAGCGATCCAACATTCCATACTCCAcccctcatcttctctcctcaccACTCTGTTCTGATGTACACATGCCATCGAGCGTTTCTTCCCGGAGGAAGTTTAACAAAAAAATGTGCCTCCTATTGTTCAATCAACAAAGTATTTTAGAAGCCATCTTTGTTTTTCCATTTACTTATTCCCAACAATCCTCACCCAGGCAGAAAATGTTGAAACAGGGGGTACTAATACAACTGTGAGGATAAGGTGTTTGTATGCTGGAAATATACTTGTTCACATTCCTTTTAACTATCGTTTTGGCTTATGAAATTGAATCACGAGACTTTCAGAGTTGAACAGCCTTAATGAATATACAGAAATGAGAGCTTTGTATTTAGTTTGCAGAAGCAGGCATCTTCTGTAATTTCATCATTTGCATTAAGGTATGTGTAGATACAAACAAAACACCTGCaaggtccacaatttttttttttcaattttcctCCAATCTTTCATGGGTTTGTATTTCAGGAATGTTCTACTCATTGAGAAGCGTGCGTGATGGTAAATGAACAAGTGTTGTTTCTTTTGCTATTTTGTTGAAAACTACAAACTTAAGAGAGCGCATTCTTCACCTTTTCCATGTGACAATTTGGAGAAGTCGTTTTTTAAATTGTTGTTCTCGTCTTGCCACGGTTCTCCACATATGACATGACTTCAGATGGGGTAAGGTCAGACTGTGCGCCGCTATATTCATCCCTACCAATGTGCCTTTTTGATGTCAAATCTGGATTCGCTTTCGCATAACACTCCTGTCCTTGGaactaggcttgtgtgtggcaATTCCATGTCTGATGATGCTGGACTATGCaccatctttttttttttctaagCAGTGGTCCTTAGTGAACACTGATCCAGAATGGGTAAATTGCAGACAATGAGGCATCACTCAAACACAGCTCGCAATAACGAAATGCTAAAGATGATTGATGTGGGTCTGGTCAGTTTGACTGGGACATCTTTATTTGTTCAGTGTTTAACATCTCATTTGTTTGAAAAATAAAGTGATCTAAACCCTGTGCACAGTTTTCTCATTTGCGATAAGACTTCATTCTTACGCAATATAAACCCAGATGTTTTTGTGTTGTATTCATGATGGGGTTATTAACAGGTCAATGTTTGCATTAATATGGTACATACAATGtttgtctacagtatataggtaCATTACTCGTTTGGTTTCCATTGTGTTCAGTGAGTCCTCATGGGGGAGCACTTGGCTGTTTTTTGAAGTAATATGGAAATTCAAAAGTTTTAAATATGGTGTTGATTGGGTTCTGCGGTTAAACTGTGTCGAACATCACTTACAAAAAAGTGCAGTATACTGCAAATACTGTGTCCAAAATGCAGTATAGCTGCAGTTCAAATGCAGTACACTGTAGTTATTCTGCAATTACGGTGTCCAAAATACCTCAGTCGACTGCAGATATTGCAGTTTCAAACCGGCATTCTTATTTTGAGAATTGTTTTGTATCTTTGAATTGCAAAGGGGTGTCTTTCACTTCCTTGAGTGGTTTTGTCTTCATTGTTATGACAAACTGCAACTATCAACACACTT

Function

NR:

description
mediator of RNA polymerase II transcription subunit 26-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612954.2 False 4317 mRNA 0.46 4 54024736 54039571
XM_021612953.2 True 4321 mRNA 0.46 4 54024736 54039572

Neighbor

gene id symbol gene type direction distance location
cnn2 cnn2 coding downstream 10302 54008434 ~ 54014434 (-)
LOC110530123 rps15 coding downstream 21548 54001129 ~ 54003188 (-)
LOC118965682 NA coding downstream 22169 54002434 ~ 54002567 (-)
LOC110530121 LOC106568956 coding downstream 29432 53965997 ~ 53995304 (-)
insl3 NA coding downstream 107119 53914820 ~ 53917617 (-)
LOC110530125 LOC106568953 coding upstream 18550 54058122 ~ 54105410 (-)
LOC110530126 LOC106569003 coding upstream 87496 54127068 ~ 54131739 (-)
LOC110530134 LOC106568945 coding upstream 334661 54374233 ~ 54377574 (-)
LOC110530139 LOC100194659 coding upstream 403558 54443130 ~ 54445222 (-)
LOC110530140 LOC106568942 coding upstream 406647 54446219 ~ 54465716 (-)
G722699 NA non-coding downstream 59329 53965176 ~ 53965407 (-)
G722696 NA non-coding downstream 70307 53954197 ~ 53954429 (-)
G722694 NA non-coding downstream 72336 53952195 ~ 53952400 (-)
G722686 NA non-coding downstream 79790 53944594 ~ 53944946 (-)
G722659 NA non-coding downstream 119274 53905148 ~ 53905462 (-)
G722805 LOC106568951 non-coding upstream 140870 54180442 ~ 54185532 (-)
G722812 NA non-coding upstream 148497 54188069 ~ 54189214 (-)
G722814 NA non-coding upstream 149820 54189392 ~ 54243058 (-)
G722773 LOC106568951 non-coding upstream 165116 54204688 ~ 54207815 (-)
G722849 NA non-coding upstream 207500 54247072 ~ 54247859 (-)
G722670 NA other downstream 96777 53926228 ~ 53927959 (-)
G722602 NA other downstream 168671 53803443 ~ 53856065 (-)
G722459 NA other downstream 525006 53495804 ~ 53499730 (-)
LOC110529122 LOC106568971 other downstream 560972 53462034 ~ 53478913 (-)
G721275 NA other downstream 1263285 52761039 ~ 52761451 (-)
G722761 NA other upstream 84807 54124379 ~ 54139341 (-)
G722854 NA other upstream 211542 54251114 ~ 54251546 (-)
G722864 LOC106581475 other upstream 242113 54281685 ~ 54281978 (-)
G723955 NA other upstream 1337709 55377281 ~ 55377776 (-)
G723966 NA other upstream 1357052 55396624 ~ 55396885 (-)

Expression


Co-expression Network