LOC110530126 (LOC106569003)


Basic Information

Item Value
gene id LOC110530126
gene name LOC106569003
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 54127068 ~ 54131739 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612960.2
AGGCAAAAATGTGCTGAGAAGTAGCTGGTCTGGTTCGTGCTGCTGCTTTGGAAGTGTTATGGCAGTTTGAAAAGTACTGAGGCAAACACTGTCTCACCACACATTTTACGGTGGCTCTGCTTTAGTGGAAGTCATAGATTAGGCTTAGTCATAGCTCATATCATCATAGCTTATTGTATTTACAACACATATTGATACCACTAATATGAGCGGTATTATACATGGTTATATGCAGTATTTTGTATGGAAACAATCCATTGAACTCAATCAATACATGAAAGGTTCAACTGTTTTCAGACATGAATTATATTAATTTCTTCTAAGGAGTACTATACAAAGCGTGCTTTCCCACCTTGTGGAACATGATAGATAATGCATGCTACATAATCCTCTACATAATGAAGAGTGCTCACCTGACATCAAGGAGAGGTGTGGCCATGCAGGAGCTGTATAAATGAAAGCATGTCTGGAATTTCATTCATAACATTGACAACCCCAGACAGGGTGCACCTCTGAGAACAAACCAACCATGCCTAGCTCAGTCGCACTGCGTTTTCTCTTCTCTTGGGTGGCCCTCCTCTCCAGCCTCCATCAGGGGGAGGGCCGGCCCCGCCTGGCCAAAGACAGTACACCCCACCTGGGGCAGGAGGAGAGCCAGAGGGCCCTGCTCCTGGAGGCAGTGAAGACAGGCATCTTGAGCTCCGTGGGGATGGAGAAAGAGCCCAGGCCCAGGGAATTGGCTTCAGAGGAGGAGCTGAGGAGGATGCATCAGCTCTACAAGGAAACACTGAGGCAGCTGACAGGGAACTCCAGTCAGGGGGGGGAATCCCGGCATTCCCCTTGGAGGACATCCACCCTGCTTCTCCCAGCCACAGTGGAGCCTTTCAAAGTGCTTCGGACTGATGAGGAACACACATCAGATGTGCTTTGGTACAGAGCTGTCTTCCACAAGAACCCAAACATCAGGAAGGATCTCACTTTGGCCTGGGCTGAGCTGAAGCTCTACAGACAACTGTTGGATGGCTCGAAAGCTGCCGAGCCCACGATTAGTGAAGAGGTTCATGTCAAGATCTATGAGACGAAACCACTGAACTCTTCTCTATTGATTCACACAGAGACCCTTGTTCAGACGGTCGCTACAAGAACTGGAGATTTGACTTTGGACATCAGAACTGTTGTTGAAAAGTGGAGAGGGAGGACGGACGGCTCCTCTCTGGTTGTGGAAGTAGGACTGGCCATCGAAGAGGGTACTGATCCCAAGAGGACCCCTCAGATGGTCCTGGAGGTAGACCTTGTAGAGCCTAGATCAGCAGGCAGAAGGAGACGGACTCGCTCCAACAAAGAAGACAACTGCGATGAAGACGGTCGCTGCTGCCGAAAGTCTGTCAACGTGTCCTTTAAGGAGATTGGCTGGTCAGACTGGGTCGTTGCCCCCGATGGTTACAACATGCACTTCTGTGATGGCTCCTGCCCCCACAACTACAAGCCAGCTAGCATGCACGCGCAGGTGAAGTCTCGTCTTCATCACATCAACAAGGGAGCAACACCTCGGCCCTGTTGTGTGCCGGCAGCCTATGAACCTATGGTCCTCATGCACTACGACAGTCGGGGAAAGTTGAAGCTCACACCCTTCAATGACTTGATTGTCAGCAAATGCCACTGTGCTTGAGTTCTTCGGGACAAGACCAGGCAAGGACAAAAAAAGAGAGTTGGAAAAAACTTTTTCCTTTTGCCGAGCCATTAGATACAATGTGCTAGCGGTACATTCTGAAATAGAAGGGATACTGTTTTCAAATGAAGTAAGAAAATAACAGTTGTCATGCTCAATTAGTGACATTCCTAGTGTCCTTTTTGAtggttaaacaaacaaaaatacccAACATCCTCCATCATCCATGGATTCTGAGAGCAAAAATAGGTTCATTGTAAACAATTCAAGTTACTGTGGAGTGATGATTCTGATATGTACTATTTTATTTGGAAGATTACACTTATGTTAGTGTCATGTGGCCCGTAATGTCATATTCTTCCAAGACTATGTACAAAATTACATTATTTATTGTAATTTATTTAACAGGGTCTAAAACATATTTgtattgtttgtagttttccaatGTTACAATATTTAGTATGTTCCTTACATCACTGTACTTTAAATATATATTCAATTGAATTTAATGCTATGTACAGTATTATTTCCAAACATTTTGGAAGTTTGTCCAGAGAAAATATACTATTCTTTAACATTTCAATAATAGTAGTATGGATATTACTACTGTTTATGTTGGGTCGTTGTGCCTGAATGCATCTGTACACAAACTTTACAATAAATATTTTTACATACAAATTATGTTTTTACCCCATGTGTTTAATTCCTTAGCAACAGCAACAGAACTTGACATTCTgacaaga

Function

NR:

description
inhibin beta C chain-like

GO: NA

KEGG:

id description
K05504 GDF15; growth differentiation factor 15

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612960.2 True 2412 mRNA 0.44 2 54127068 54131739

Neighbor

gene id symbol gene type direction distance location
LOC110530125 LOC106568953 coding downstream 21658 54058122 ~ 54105410 (-)
crsp7 LOC106568954 coding downstream 87496 54024736 ~ 54039572 (-)
cnn2 cnn2 coding downstream 112634 54008434 ~ 54014434 (-)
LOC110530123 rps15 coding downstream 123880 54001129 ~ 54003188 (-)
LOC118965682 NA coding downstream 124501 54002434 ~ 54002567 (-)
LOC110530134 LOC106568945 coding upstream 242494 54374233 ~ 54377574 (-)
LOC110530139 LOC100194659 coding upstream 311391 54443130 ~ 54445222 (-)
LOC110530140 LOC106568942 coding upstream 314480 54446219 ~ 54465716 (-)
LOC110530141 LOC106568941 coding upstream 346186 54477925 ~ 54485773 (-)
LOC110530142 LOC106568939 coding upstream 366624 54498363 ~ 54507488 (-)
G722728 NA non-coding downstream 92346 54033291 ~ 54034722 (-)
G722699 NA non-coding downstream 161661 53965176 ~ 53965407 (-)
G722696 NA non-coding downstream 172639 53954197 ~ 53954429 (-)
G722694 NA non-coding downstream 174668 53952195 ~ 53952400 (-)
G722686 NA non-coding downstream 182122 53944594 ~ 53944946 (-)
G722805 LOC106568951 non-coding upstream 48703 54180442 ~ 54185532 (-)
G722812 NA non-coding upstream 56330 54188069 ~ 54189214 (-)
G722814 NA non-coding upstream 57653 54189392 ~ 54243058 (-)
G722773 LOC106568951 non-coding upstream 72949 54204688 ~ 54207815 (-)
G722849 NA non-coding upstream 115333 54247072 ~ 54247859 (-)
G722670 NA other downstream 199109 53926228 ~ 53927959 (-)
G722602 NA other downstream 271003 53803443 ~ 53856065 (-)
G722459 NA other downstream 627338 53495804 ~ 53499730 (-)
LOC110529122 LOC106568971 other downstream 663304 53462034 ~ 53478913 (-)
G721275 NA other downstream 1365617 52761039 ~ 52761451 (-)
G722854 NA other upstream 119375 54251114 ~ 54251546 (-)
G722864 LOC106581475 other upstream 149946 54281685 ~ 54281978 (-)
G723955 NA other upstream 1245542 55377281 ~ 55377776 (-)
G723966 NA other upstream 1264885 55396624 ~ 55396885 (-)
G724287 LOC106568908 other upstream 1503799 55635538 ~ 55646014 (-)

Expression


Co-expression Network