LOC110530141 (LOC106568941)


Basic Information

Item Value
gene id LOC110530141
gene name LOC106568941
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 54477925 ~ 54485773 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036985695.1
TTCTCCCCCTGGCTTGCACTGCTGAAGAGTGGATGTTGACGAAATTGTTTTAGGGCTCTATATTTAACGTTTAAAAGGAACACTCATTTTACGTTATTTCGTGAAAACGTTATCATCTGAAGACAGTTATGAATAGATGAATGGGCCAGTCGGTGTTCGTTCGTGAACATATGCTAGCTAGCGAGAACGCTAAACATTTCAAGCGTTCTCCATAGCCTATTAATATTGTACATAACTGGTCAGTTCGTCTGCTTGTCGGAAATAATTCGTACATCAAACACGTCTGTAAATAATAGCTCACCATAGCCAGGACAGTTAGAGCATGTTTTGTAATAGCTTTCattgcaatgttttttttttatttatttaaccaggcaagtcagttaagaacaaattattatttacaatgacggcctaaattACCCCGGCCAATTTTGGCAAAGATAAATATTTATAGACGAATACAAATCAGTAGCGGATTTAGGTACGGGCGGCATCTTGCCGGGGGCAGGGCTGAAGGGGTGGTTCGccccatacaagctagaaccgccacatacacttgaaacaaatagccaaaccgaaaacTACAAAAATGCTTTGTGCTACTAAAATCAAAGAAATGTAAGCTAAACTGACAACGGAGTGAAGAGCAGAAATCACATCTATCAAGCAACTGGTCGGAAGACGTCTTCTACTCCTGTCATCCCGTGCTGTCGTCTCCTCATTCAATAGAGGAGATGCCTACAGGATATGTGGGTCTCCGGCTGTCCCTGTGCAGGTGCGGTATGCGTCAGAACGACCTAGTCGTAAAGGCTTTTTCGGGGAGTTTGTGGAGAACCTGAGGCAGGAGTTTGGTAAGGACAAGGAGATGAAGGAGAACATCAAGAAGTTCAGAGAGGAGGCCAAGAGGCTAGAGGAGTCGGATGCCCTGCAACAGGCTCGGAGGAAATTTAAAACCATTGAGTCTGAAACCGTTAAGACCTCTGAGGTGTTCAAGAAGACCTTTGGGACTCTGTCTGAAACTGTGAAGGAGGGCCTTGAGGAGGTGACCCGTACAGACCTGGGGAAGAAAAtcaaggagggggtggaggaggcaGCCAAGACTGCCAGGCACTCAGTTGAGTCTGTGTCCAAGGGGGGAGAGAAGCTGGGAGTGACCAGCGCCTTCAGGGCCATCTCACAGGGGATGGAGTCAGTGAAGAGAGAGATTGATGTGGTGGACGATGGTACTTACAGGGCTCCTTCTCAACTCAGGAAGAGGAGGGAATTCTCCTCCAAGGGAGGGGAGAGCGACAACCGAGTGTTTGAGGCCAACGAAGAGGACATGGGTGTTGTGCTGCACAAGGATTCTAAGTGGTACACACAGTGGAAGGACTttaaagacaacaacatggttTTCAACAggtTCTTTGAGATGAAAATGAAGTATGACGAGAGTGACAACGCCCTTGTCAGAGCATCTCGAGCCGTGACCGACAGAGTCACCGATCTActagGTGGTCTCTTCTCTACCACGGAGATGTCTCAGGTGCTGACGGAGATCTTAAAGGCAGATCCCAGCTTCGACAAGGACTCCTTTCTCAAACAGTGTGAGAAGGACATCATCCCCAACATCCTAGAGGCTATGATCCGCGGGGAGCTCGAGATGCTGAAAGACTGGTGCTATGAAGCCaCATACAGTCAGCTGGCCCACCCCATCCAGCAGGCCAGGGCCCTGGGTCTAATGTTCCAGTCCAAGGTCCTAGATATTGACAACGTAGATttGGCGATGGGGAAGCTCATGGATCAAGGCCCCGTGTTGATCATCACCTTCCAGGCCCAGGTGGTCATGGTGATTCGTAGTCCCAAGGGAGACCTGGTGGAAGGAGATCCGgaGAAGGTGTTGAGGATGATGTACGTGTGGGCTCTGTGTCGGGACCAGGAGGAGCTCAACCCCGACGCGGCCTGGAGCCTACTGGACATGTCTGCCTCCAGCACCGAGCAGGCTCTTTGAGAGAATGGGACCCGACAAAGGGACGCTcccgggacacacacacacatccaggatCTACACACACAAGCCAGTGTACACCGCAACATCACACACATCCAGGAGCCACACTGTATGTCAAGAGGACGTGGCGGCATGTCACTTTCCAGATGCGTACTAGAGTGGTGTGTTTGTGGTTAGTCCTCATGGCGCAGATGGGATCttctactggtgtgtgtgtgtgtgtggtcttaggAACGAAATGGAGTGTGTACGGACACGAAGTGAAAGGACAGTTTGCTTTCAGTTGTGcacccactctttctattctgtttagagcAAGTTTGCTTTCTGTGAAGGTTTGCTTTCtgtagtacacagctttgtacgagatcttcagtttcttggctatttcttacatggaatagctttcatttctcagaacaagaatagactgacgaatttcagaagaaagttctttgtttctggccattttgagcctgtaatcgaacccacaaatgcggatgttccagatactcaactagtctaaagaaggccagttttattgcttctttaattagcacaacagttttcagttgtgctaacgtaattgcaaaatggttttctaatgatcaattagccttttaaaatgataaacttggattagctaacacaacgtgccattggaacacaggagtgatgggtgCTGATAATGGGCGTCGGTATGGCTATGTAGATATTCcgtaaaaaaatctgccattttcgagttacaatagtcatttacaacattaacaatgtctacactatttctgaccaatttgatgttgttttaatggacaaaaaatgagcttttctttcaaaaacaaggacatttgttaGAATGTTTTATGCTTTTTACGGGAAGACAAACTGAAGATAAATAGGATATCTATGTATGTTTAAAGATCCATCGTGTCACGTGTCCAAATACTCATGGCAGTTCAGACTAACTGTTAAATATGTCAAACTGCTTCATTGCAAGCTAGGGTGGGACCACAGTCAGGCTTGTCGTAAGGCAGCTACTTTTTCAGCTGAACCTCATAGACATTGCACTGATGTTCTCAGTACTTCCAGATGTACTTATATGGTACTGTATGAGAGACTGCCTGCAACGGGTATGTATATGGCTGTTTTTAGatgtaaaaaaaattacattACACGTTTATTTTTTGTCTGTATTACACGGTTTTCACATCAGGAAACTGGAATACTGGTAACTGAAAGGGTTATTTTTGTTAACCATAACTCAATAACAGAAAATAATATTTCAGGGAGTGTTGTAGCTAACTGATTCGAGTATTTCATTCAGAGTTGGTTCTAGCATGGGGGAAATGTGATATCTCATGACAAAGGGCAATATCATATTTCAGCCGTCTATATAGATAACATGTAAATCTAATGCTCTGAGATGGACTATTCATCAAAACAAGGACCATCATTCTAACAAAAATATGGTTTAATGTGGTGAGCTCTAGATTAAAGGATATAAACCAGGA
>XM_021612983.2
ATAGCGGAGGGTCGTCCCTAGTTACCACGGTCACAGTCGAAATTATGGCTAAACCCTGCCCagttctacaatttatcttcttgaAATCTGatgttaaccctaaccttaaccacactgctaacatttTGGCTAACGCGAACCTTAAACTAAGACCAAACATCTATTTTTTTGTTTTCATAAATATTTATGATACaaccaattttgactttgtggtttTGGTAAACTAGTGAAACCCTCAGCGGAGTTACACGTGGTCACGTCACGTGCGCCATCACTCAAGATGGCAGCCTCCGTGTGTCGGTGCTATGAGCTGGTCGGAAGACGTCTTCTACTCCTGTCATCCCGTGCTGTCGTCTCCTCATTCAATAGAGGAGATGCCTACAGGATATGTGGGTCTCCGGCTGTCCCTGTGCAGGTGCGGTATGCGTCAGAACGACCTAGTCGTAAAGGCTTTTTCGGGGAGTTTGTGGAGAACCTGAGGCAGGAGTTTGGTAAGGACAAGGAGATGAAGGAGAACATCAAGAAGTTCAGAGAGGAGGCCAAGAGGCTAGAGGAGTCGGATGCCCTGCAACAGGCTCGGAGGAAATTTAAAACCATTGAGTCTGAAACCGTTAAGACCTCTGAGGTGTTCAAGAAGACCTTTGGGACTCTGTCTGAAACTGTGAAGGAGGGCCTTGAGGAGGTGACCCGTACAGACCTGGGGAAGAAAAtcaaggagggggtggaggaggcaGCCAAGACTGCCAGGCACTCAGTTGAGTCTGTGTCCAAGGGGGGAGAGAAGCTGGGAGTGACCAGCGCCTTCAGGGCCATCTCACAGGGGATGGAGTCAGTGAAGAGAGAGATTGATGTGGTGGACGATGGTACTTACAGGGCTCCTTCTCAACTCAGGAAGAGGAGGGAATTCTCCTCCAAGGGAGGGGAGAGCGACAACCGAGTGTTTGAGGCCAACGAAGAGGACATGGGTGTTGTGCTGCACAAGGATTCTAAGTGGTACACACAGTGGAAGGACTttaaagacaacaacatggttTTCAACAggtTCTTTGAGATGAAAATGAAGTATGACGAGAGTGACAACGCCCTTGTCAGAGCATCTCGAGCCGTGACCGACAGAGTCACCGATCTActagGTGGTCTCTTCTCTACCACGGAGATGTCTCAGGTGCTGACGGAGATCTTAAAGGCAGATCCCAGCTTCGACAAGGACTCCTTTCTCAAACAGTGTGAGAAGGACATCATCCCCAACATCCTAGAGGCTATGATCCGCGGGGAGCTCGAGATGCTGAAAGACTGGTGCTATGAAGCCaCATACAGTCAGCTGGCCCACCCCATCCAGCAGGCCAGGGCCCTGGGTCTAATGTTCCAGTCCAAGGTCCTAGATATTGACAACGTAGATttGGCGATGGGGAAGCTCATGGATCAAGGCCCCGTGTTGATCATCACCTTCCAGGCCCAGGTGGTCATGGTGATTCGTAGTCCCAAGGGAGACCTGGTGGAAGGAGATCCGgaGAAGGTGTTGAGGATGATGTACGTGTGGGCTCTGTGTCGGGACCAGGAGGAGCTCAACCCCGACGCGGCCTGGAGCCTACTGGACATGTCTGCCTCCAGCACCGAGCAGGCTCTTTGAGAGAATGGGACCCGACAAAGGGACGCTcccgggacacacacacacatccaggatCTACACACACAAGCCAGTGTACACCGCAACATCACACACATCCAGGAGCCACACTGTATGTCAAGAGGACGTGGCGGCATGTCACTTTCCAGATGCGTACTAGAGTGGTGTGTTTGTGGTTAGTCCTCATGGCGCAGATGGGATCttctactggtgtgtgtgtgtgtgtggtcttaggAACGAAATGGAGTGTGTACGGACACGAAGTGAAAGGACAGTTTGCTTTCAGTTGTGcacccactctttctattctgtttagagcAAGTTTGCTTTCTGTGAAGGTTTGCTTTCtgtagtacacagctttgtacgagatcttcagtttcttggctatttcttacatggaatagctttcatttctcagaacaagaatagactgacgaatttcagaagaaagttctttgtttctggccattttgagcctgtaatcgaacccacaaatgcggatgttccagatactcaactagtctaaagaaggccagttttattgcttctttaattagcacaacagttttcagttgtgctaacgtaattgcaaaatggttttctaatgatcaattagccttttaaaatgataaacttggattagctaacacaacgtgccattggaacacaggagtgatgggtgCTGATAATGGGCGTCGGTATGGCTATGTAGATATTCcgtaaaaaaatctgccattttcgagttacaatagtcatttacaacattaacaatgtctacactatttctgaccaatttgatgttgttttaatggacaaaaaatgagcttttctttcaaaaacaaggacatttgttaGAATGTTTTATGCTTTTTACGGGAAGACAAACTGAAGATAAATAGGATATCTATGTATGTTTAAAGATCCATCGTGTCACGTGTCCAAATACTCATGGCAGTTCAGACTAACTGTTAAATATGTCAAACTGCTTCATTGCAAGCTAGGGTGGGACCACAGTCAGGCTTGTCGTAAGGCAGCTACTTTTTCAGCTGAACCTCATAGACATTGCACTGATGTTCTCAGTACTTCCAGATGTACTTATATGGTACTGTATGAGAGACTGCCTGCAACGGGTATGTATATGGCTGTTTTTAGatgtaaaaaaaattacattACACGTTTATTTTTTGTCTGTATTACACGGTTTTCACATCAGGAAACTGGAATACTGGTAACTGAAAGGGTTATTTTTGTTAACCATAACTCAATAACAGAAAATAATATTTCAGGGAGTGTTGTAGCTAACTGATTCGAGTATTTCATTCAGAGTTGGTTCTAGCATGGGGGAAATGTGATATCTCATGACAAAGGGCAATATCATATTTCAGCCGTCTATATAGATAACATGTAAATCTAATGCTCTGAGATGGACTATTCATCAAAACAAGGACCATCATTCTAACAAAAATATGGTTTAATGTGGTGAGCTCTAGATTAAAGGATATAAACCAGGA
>XM_021612984.2
CTATAGCGGAGGGTCGTCCCTAGTTACCACGGTCACAGTCGAAATTATGGCTAAACCCTGCCCagttctacaatttatcttcttgaAATCTGatgttaaccctaaccttaaccacactgctaacatttTGGCTAACGCGAACCTTAAACTAAGACCAAACATCTATTTTTTTGTTTTCATAAATATTTATGATACaaccaattttgactttgtggtttTGGTAAACTAGTGAAACCCTCAGCGGAGTTACACGTGGTCACGTCACGTGCGCCATCACTCAAGATGGCAGCCTCCGTGTGTCGGTGCTATGAGCTGGTCGGAAGACGTCTTCTACTCCTGTCATCCCGTGCTGTCGTCTCCTCATTCAATAGAGGAGATGCCTACAGGATATGTGGGTCTCCGGCTGTCCCTGTGCAGGTGCGGTATGCGTCAGAACGACCTAGTCGTAAAGGCTTTTTCGGGGAGTTTGTGGAGAACCTGAGGCAGGAGTTTGGTAAGGACAAGGAGATGAAGGAGAACATCAAGAAGTTCAGAGAGGAGGCCAAGAGGCTAGAGGAGTCGGATGCCCTGCAACAGGCTCGGAGGAAATTTAAAACCATTGAGTCTGAAACCGTTAAGACCTCTGAGGTGTTCAAGAAGACCTTTGGGACTCTGTCTGAAACTGTGAAGGAGGGCCTTGAGGAGGTGACCCGTACAGACCTGGGGAAGAAAAtcaaggagggggtggaggaggcaGCCAAGACTGCCAGGCACTCAGTTGAGTCTGTGTCCAAGGGGGGAGAGAAGCTGGGAGTGACCAGCGCCTTCAGGGCCATCTCACAGGGGATGGAGTCAGTGAAGAGAGAGATTGATGTGGTGGACGATGGTACTTACAGGGCTCCTTCTCAACTCAGGAAGAGGAGGGAATTCTCCTCCAAGGGAGGGGAGAGCGACAACCGAGTGTTTGAGGCCAACGAAGAGGACATGGGTGTTGTGCTGCACAAGGATTCTAAGTGGTACACACAGTGGAAGGACTttaaagacaacaacatggttTTCAACAggtTCTTTGAGATGAAAATGAAGTATGACGAGAGTGACAACGCCCTTGTCAGAGCATCTCGAGCCGTGACCGACAGAGTCACCGATCTActagGTGGTCTCTTCTCTACCACGGAGATGTCTCAGGTGCTGACGGAGATCTTAAAGGCAGATCCCAGCTTCGACAAGGACTCCTTTCTCAAACAGTGTGAGAAGGACATCATCCCCAACATCCTAGAGGCTATGATCCGCGGGGAGCTCGAGATGCTGAAAGACTGGTGCTATGAAGCCaCATACAGTCAGCTGGCCCACCCCATCCAGCAGGCCAGGGCCCTGGGTCTAATGTTCCAGTCCAAGGTCCTAGATATTGACAACGTAGATttactctttcatctctgtctctcagttGGCGATGGGGAAGCTCATGGATCAAGGCCCCGTGTTGATCATCACCTTCCAGGCCCAGGTGGTCATGGTGATTCGTAGTCCCAAGGGAGACCTGGTGGAAGGAGATCCGgaGAAGGTGTTGAGGATGATGTACGTGTGGGCTCTGTGTCGGGACCAGGAGGAGCTCAACCCCGACGCGGCCTGGAGCCTACTGGACATGTCTGCCTCCAGCACCGAGCAGGCTCTTTGAGAGAATGGGACCCGACAAAGGGACGCTcccgggacacacacacacatccaggatCTACACACACAAGCCAGTGTACACCGCAACATCACACACATCCAGGAGCCACACTGTATGTCAAGAGGACGTGGCGGCATGTCACTTTCCAGATGCGTACTAGAGTGGTGTGTTTGTGGTTAGTCCTCATGGCGCAGATGGGATCttctactggtgtgtgtgtgtgtgtggtcttaggAACGAAATGGAGTGTGTACGGACACGAAGTGAAAGGACAGTTTGCTTTCAGTTGTGcacccactctttctattctgtttagagcAAGTTTGCTTTCTGTGAAGGTTTGCTTTCtgtagtacacagctttgtacgagatcttcagtttcttggctatttcttacatggaatagctttcatttctcagaacaagaatagactgacgaatttcagaagaaagttctttgtttctggccattttgagcctgtaatcgaacccacaaatgcggatgttccagatactcaactagtctaaagaaggccagttttattgcttctttaattagcacaacagttttcagttgtgctaacgtaattgcaaaatggttttctaatgatcaattagccttttaaaatgataaacttggattagctaacacaacgtgccattggaacacaggagtgatgggtgCTGATAATGGGCGTCGGTATGGCTATGTAGATATTCcgtaaaaaaatctgccattttcgagttacaatagtcatttacaacattaacaatgtctacactatttctgaccaatttgatgttgttttaatggacaaaaaatgagcttttctttcaaaaacaaggacatttgttaGAATGTTTTATGCTTTTTACGGGAAGACAAACTGAAGATAAATAGGATATCTATGTATGTTTAAAGATCCATCGTGTCACGTGTCCAAATACTCATGGCAGTTCAGACTAACTGTTAAATATGTCAAACTGCTTCATTGCAAGCTAGGGTGGGACCACAGTCAGGCTTGTCGTAAGGCAGCTACTTTTTCAGCTGAACCTCATAGACATTGCACTGATGTTCTCAGTACTTCCAGATGTACTTATATGGTACTGTATGAGAGACTGCCTGCAACGGGTATGTATATGGCTGTTTTTAGatgtaaaaaaaattacattACACGTTTATTTTTTGTCTGTATTACACGGTTTTCACATCAGGAAACTGGAATACTGGTAACTGAAAGGGTTATTTTTGTTAACCATAACTCAATAACAGAAAATAATATTTCAGGGAGTGTTGTAGCTAACTGATTCGAGTATTTCATTCAGAGTTGGTTCTAGCATGGGGGAAATGTGATATCTCATGACAAAGGGCAATATCATATTTCAGCCGTCTATATAGATAACATGTAAATCTAATGCTCTGAGATGGACTATTCATCAAAACAAGGACCATCATTCTAACAAAAATATGGTTTAATGTGGTGAGCTCTAGATTAAAGGATATAAACCAGGA

Function

NR:

description
mitochondrial import inner membrane translocase subunit TIM44-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036985695.1 False 3504 mRNA 0.45 13 54477925 54485433
XM_021612983.2 False 3141 mRNA 0.46 13 54477925 54485771
XM_021612984.2 True 3168 mRNA 0.45 13 54477925 54485773

Neighbor

gene id symbol gene type direction distance location
LOC110530140 LOC106568942 coding downstream 12209 54446219 ~ 54465716 (-)
LOC110530139 LOC100194659 coding downstream 32703 54443130 ~ 54445222 (-)
LOC110530134 LOC106568945 coding downstream 100351 54374233 ~ 54377574 (-)
LOC110530126 LOC106569003 coding downstream 346186 54127068 ~ 54131739 (-)
LOC110530125 LOC106568953 coding downstream 372515 54058122 ~ 54105410 (-)
LOC110530142 LOC106568939 coding upstream 12590 54498363 ~ 54507488 (-)
LOC110530144 LOC106568935 coding upstream 213060 54698833 ~ 54975146 (-)
LOC110530149 LOC106568933 coding upstream 588707 55074480 ~ 55084517 (-)
LOC110530150 NA coding upstream 600195 55085968 ~ 55089720 (-)
LOC110530155 LOC106568925 coding upstream 668905 55154678 ~ 55180780 (-)
G722978 NA non-coding downstream 8494 54468905 ~ 54469431 (-)
G722949 NA non-coding downstream 72012 54404615 ~ 54405913 (-)
G722906 NA non-coding downstream 146150 54330765 ~ 54331775 (-)
G722862 NA non-coding downstream 200886 54276769 ~ 54277039 (-)
G722863 NA non-coding downstream 204870 54272776 ~ 54273055 (-)
G722990 NA non-coding upstream 24390 54510163 ~ 54510508 (-)
G722993 NA non-coding upstream 27572 54513345 ~ 54514044 (-)
G722997 NA non-coding upstream 32045 54517818 ~ 54518410 (-)
G723017 NA non-coding upstream 71687 54557460 ~ 54557689 (-)
G723025 NA non-coding upstream 79918 54565691 ~ 54617557 (-)
G722864 LOC106581475 other downstream 195947 54281685 ~ 54281978 (-)
G722854 NA other downstream 226379 54251114 ~ 54251546 (-)
G722761 NA other downstream 338584 54124379 ~ 54139341 (-)
G722670 NA other downstream 549966 53926228 ~ 53927959 (-)
G722602 NA other downstream 621860 53803443 ~ 53856065 (-)
G723955 NA other upstream 891508 55377281 ~ 55377776 (-)
G723966 NA other upstream 910851 55396624 ~ 55396885 (-)
G724287 LOC106568908 other upstream 1149765 55635538 ~ 55646014 (-)
G724400 NA other upstream 1299744 55785517 ~ 55791485 (-)
G724943 LOC106604981 other upstream 1634430 56120203 ~ 56128288 (-)

Expression


Co-expression Network