LOC110530157 (LOC106568924)


Basic Information

Item Value
gene id LOC110530157
gene name LOC106568924
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 55203683 ~ 55211103 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021613007.2
CGCTCCCCATACTGAGCGGGCGCGCTGGACGCAGTGAGGAATAACTCAAACCTCACTTCCAGTTCCACACTGCACTTCACCGGCACTAAAAAAAACCTCAGACATGGATGACCCACTCACAAAATGGCTCCACTTTCACACTAGCATCAACAAGACGTCGGGAACGTGTGGTGTTTTCGACAGCTGATTTATAGAGAGACATTTCATAGGATATAACTCCAACGTGATGAAATTATGGAAAAAATGAAGCTGGATCTTTGTCCTGGAAGTCCCGGTGCCAAATTATGCATCCCGCTGAAGCAGGATTCCATCAGGGAGAATGGGTGCCAAGACCTGGAGGACTCGAAGGAGGGGAACTTCACTGGGGAAAGGGTTAAGACAGATGACGCGCCTCTGCGGAACACGCGCAACGGGACCATCATCCTAAACGGCGTTGCCAAGGAAACCGCTTACGACGCCCTTGACCTGAAAAGGGAAGTACCAGTGATCGAGCTCTTGAGGAGAGACGATATAAAGACGGGACAGCAGAGAACCGACAGTCAAACGGTACCGATCACGGAGCTTCGCAGACCACCCGTGCCGTTGCCGCTGCCGCACCGAGACGCGCTGATCGACGCTCGAATGGTTCAGCTGAGCCCAAACGCGTTCCCTCTCCCGGCGCGAGCAATGCTCTACAACTTGGCGCAACCTCTCGCTGCAATCAACAGTCTTGGAGGGGAGTCGGAACAGTACGGCATGTACCCCAGCAACAGGGTAAAGCGCCGTCCTGCGCCTTACGAGGTTGAGCTCGACGAGGCTGGCCAACCAAAGATCGTAAGGCGGATCTTCACCAACAGCCGGGAGCGCTGGCGGCAGCAGAATGTCAACGGGGCGTTCTCCGAGCTCCGCAAGCTCATCCCCACCCACCCACCGGACAAGAAGCTGAGCAAGAACGAGATCCTGCGTCTGGCCATGAAGTACATCAGCTTCCTGTCCAACCTGCTGGACGACCAGGACGGAGGGGCCACCGTGGGCGTGGGTGACGGGACAGGGCTGCTGGTGGGGGGCCGTGAGGGTGGACCCCAGGGCCCTCGTCAGGACGGGGTGGGACTGGCCAGGGAGGACGACCTCCTCCTCCAGGGCACGTTGTCGCCCGGGTCCAGCTGTGGGAGTCTGCCAGACGGGGACGGCAGCCCCGAGAGCTTCACCGAGGACCAAGACTCACCTCCAGCCCAGAGAACTGTGCCCGTGCCGCGCGGTAGGGACCTACGACGCAATGCACGCCCACAAGATGGCGGCAGCCAGCGATGACGGCGATGATAATAGTGGTGGGGATGGTGGCGATGTGGTGTCGGTGATGACGATGGTGGATACGGAGTTGGTGGAGTTGATGGTGGACCGCAGGGAAACAAAGGGATTGACTTATGTCCCCAGAAGAGGGATGACTCAAATATGGATGAGTCTGAGAAGGGCCCTAGCATCTCTGAGCTCTATCTAAAGAACGGTGCTTCAGGTTCGGGGAGCATGCTGATGCCAGAATTTCACTTCATCAGGATTCTAATGTCCTTTTTTTGGTCCTTTTTTGGTCAGTTGGTTAACAAAATGAAAGACTTGTAAATTCTGCATGCTTCATACTGTCTAGGACCTGGGTTGAGGAACACCTCATATTTCCTGCATTATGAATGTTCAAATAGAGTGTGCTTCTGTTACACTATCATGTTATCAGTATACATCATATGTCATCGTCATAAAAGTCATTGATGCCATGGTACCAGCAGGCGACGCATCAGTCCACACCAGGAAATGTCAATAGGAATGCCATCATGCTCTCTCACCTTGGGTTAAGAACAAGATCAATCTTTACCAGTTGTCAATGAGGGCCATTTGAGCTGTTCTGAAAGTTTACGACAACAACACAACTGTTTCGCTGATAGCAATGGCTTGATGCCAAATCCTCACACAAAAAAATGCACATTTAATCACACATTGAAGACCATTATTATTTGCTTTAAAATGTGTTATCTTTAGCAAGGATTTAGCACTCTGAACACATGATCAAACATGTACATATAACATTAGCCTAACTTCTAAAATATTTTGACAGTGGTTCATGTCAAGTGATGTGATTAGGCAGTTTGATATAGTGGCCTATATTTTAGACAGGGCTTTCAGGCAGGTGGCTTTTTGAGAAGGATTCTGCTCTGTGCTCCTGATGACATACTATTCATTCAACAGTGGGTGAACAACATGTCAACTAGTAAATTAATGTCAAACACATATAATGATATAACAAATGTGGtaccttatttatttatttccgcCACACATGACTGATTAGTGTTGAGTAAAACGACGCAGAGTAACATGGCAACTGACCGTTAAGCacgcacacattacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaca
>XM_036985714.1
CCACATTGCGCTCGTGTTCCGCTCCCCATACTGAGCGGGCGCGCTGGACGCAGTGAGGAATAACTCAAACCTCACTTCCAGTTCCACACTGCACTTCACCGGCACTAAAAAAAACCTCAGACATGGATGACCCACTCACAAAATGGCTCCACTTTCACACTAGCATCAACAAGACGTCGGGAACGTGTGGTGTTTTCGACAGCTGATTTATAGAGAGACATTTCATAGGATATAACTCCAACGTGATGAAATTATGGAAAAAATGAAGCTGGATCTTTGTCCTGGAAGTCCCGGTGCCAAATTATGCATCCCGCTGAAGCAGGATTCCATCAGGGAGAATGGGTGCCAAGACCTGGAGGACTCGAAGGAGGGGAACTTCACTGGGGAAAGGGTTAAGACAGATGACGCGCCTCTGCGGAACACGCGCAACGGGACCATCATCCTAAACGGCGTTGCCAAGGAAACCGCTTACGACGCCCTTGACCTGAAAAGGGAAGTACCAGTGATCGAGCTCTTGAGGAGAGACGATATAAAGACGGGACAGCAGAGAACCGACAGTCAAACGGTACCGATCACGGAGCTTCGCAGACCACCCGTGCCGTTGCCGCTGCCGCACCGAGACGCGCTGATCGACGCTCGAATGGTTCAGCTGAGCCCAAACGCGTTCCCTCTCCCGGCGCGAGCAATGCTCTACAACTTGGCGCAACCTCTCGCTGCAATCAACAGTCTTGGAGGGGAGTCGGAACAGTACGGCATGTACCCCAGCAACAGGGTAAAGCGCCGTCCTGCGCCTTACGAGGTTGAGCTCGACGAGGGTAGGCGCATTTTAGATCTTTCTAAGTATGCTGGCCAACCAAAGATCGTAAGGCGGATCTTCACCAACAGCCGGGAGCGCTGGCGGCAGCAGAATGTCAACGGGGCGTTCTCCGAGCTCCGCAAGCTCATCCCCACCCACCCACCGGACAAGAAGCTGAGCAAGAACGAGATCCTGCGTCTGGCCATGAAGTACATCAGCTTCCTGTCCAACCTGCTGGACGACCAGGACGGAGGGGCCACCGTGGGCGTGGGTGACGGGACAGGGCTGCTGGTGGGGGGCCGTGAGGGTGGACCCCAGGGCCCTCGTCAGGACGGGGTGGGACTGGCCAGGGAGGACGACCTCCTCCTCCAGGGCACGTTGTCGCCCGGGTCCAGCTGTGGGAGTCTGCCAGACGGGGACGGCAGCCCCGAGAGCTTCACCGAGGACCAAGACTCACCTCCAGCCCAGAGAACTGTGCCCGTGCCGCGCGGTAGGGACCTACGACGCAATGCACGCCCACAAGATGGCGGCAGCCAGCGATGACGGCGATGATAATAGTGGTGGGGATGGTGGCGATGTGGTGTCGGTGATGACGATGGTGGATACGGAGTTGGTGGAGTTGATGGTGGACCGCAGGGAAACAAAGGGATTGACTTATGTCCCCAGAAGAGGGATGACTCAAATATGGATGAGTCTGAGAAGGGCCCTAGCATCTCTGAGCTCTATCTAAAGAACGGTGCTTCAGGTTCGGGGAGCATGCTGATGCCAGAATTTCACTTCATCAGGATTCTAATGTCCTTTTTTTGGTCCTTTTTTGGTCAGTTGGTTAACAAAATGAAAGACTTGTAAATTCTGCATGCTTCATACTGTCTAGGACCTGGGTTGAGGAACACCTCATATTTCCTGCATTATGAATGTTCAAATAGAGTGTGCTTCTGTTACACTATCATGTTATCAGTATACATCATATGTCATCGTCATAAAAGTCATTGATGCCATGGTACCAGCAGGCGACGCATCAGTCCACACCAGGAAATGTCAATAGGAATGCCATCATGCTCTCTCACCTTGGGTTAAGAACAAGATCAATCTTTACCAGTTGTCAATGAGGGCCATTTGAGCTGTTCTGAAAGTTTACGACAACAACACAACTGTTTCGCTGATAGCAATGGCTTGATGCCAAATCCTCACACAAAAAAATGCACATTTAATCACACATTGAAGACCATTATTATTTGCTTTAAAATGTGTTATCTTTAGCAAGGATTTAGCACTCTGAACACATGATCAAACATGTACATATAACATTAGCCTAACTTCTAAAATATTTTGACAGTGGTTCATGTCAAGTGATGTGATTAGGCAGTTTGATATAGTGGCCTATATTTTAGACAGGGCTTTCAGGCAGGTGGCTTTTTGAGAAGGATTCTGCTCTGTGCTCCTGATGACATACTATTCATTCAACAGTGGGTGAACAACATGTCAACTAGTAAATTAATGTCAAACACATATAATGATATAACAAATGTGGtaccttatttatttatttccgcCACACATGACTGATTAGTGTTGAGTAAAACGACGCAGAGTAACATGGCAACTGACCGTTAAGCacgcacacattacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaca
>XM_021613006.2
CAGCACGTGATATTATGTCAAAGGTTGTGTGACACTCAACTTTCAAGGCGTGAAAACAGAGAGCTAGTGAATGAGGGGACATTGGTGGGGATTTTTTTAATCAATGGAATGTGGTGTTTTCGACAGCTGATTTATAGAGAGACATTTCATAGGATATAACTCCAACGTGATGAAATTATGGAAAAAATGAAGCTGGATCTTTGTCCTGGAAGTCCCGGTGCCAAATTATGCATCCCGCTGAAGCAGGATTCCATCAGGGAGAATGGGTGCCAAGACCTGGAGGACTCGAAGGAGGGGAACTTCACTGGGGAAAGGGTTAAGACAGATGACGCGCCTCTGCGGAACACGCGCAACGGGACCATCATCCTAAACGGCGTTGCCAAGGAAACCGCTTACGACGCCCTTGACCTGAAAAGGGAAGTACCAGTGATCGAGCTCTTGAGGAGAGACGATATAAAGACGGGACAGCAGAGAACCGACAGTCAAACGGTACCGATCACGGAGCTTCGCAGACCACCCGTGCCGTTGCCGCTGCCGCACCGAGACGCGCTGATCGACGCTCGAATGGTTCAGCTGAGCCCAAACGCGTTCCCTCTCCCGGCGCGAGCAATGCTCTACAACTTGGCGCAACCTCTCGCTGCAATCAACAGTCTTGGAGGGGAGTCGGAACAGTACGGCATGTACCCCAGCAACAGGGTAAAGCGCCGTCCTGCGCCTTACGAGGTTGAGCTCGACGAGGGTAGGCGCATTTTAGATCTTTCTAAGTATGCTGGCCAACCAAAGATCGTAAGGCGGATCTTCACCAACAGCCGGGAGCGCTGGCGGCAGCAGAATGTCAACGGGGCGTTCTCCGAGCTCCGCAAGCTCATCCCCACCCACCCACCGGACAAGAAGCTGAGCAAGAACGAGATCCTGCGTCTGGCCATGAAGTACATCAGCTTCCTGTCCAACCTGCTGGACGACCAGGACGGAGGGGCCACCGTGGGCGTGGGTGACGGGACAGGGCTGCTGGTGGGGGGCCGTGAGGGTGGACCCCAGGGCCCTCGTCAGGACGGGGTGGGACTGGCCAGGGAGGACGACCTCCTCCTCCAGGGCACGTTGTCGCCCGGGTCCAGCTGTGGGAGTCTGCCAGACGGGGACGGCAGCCCCGAGAGCTTCACCGAGGACCAAGACTCACCTCCAGCCCAGAGAACTGTGCCCGTGCCGCGCGGTAGGGACCTACGACGCAATGCACGCCCACAAGATGGCGGCAGCCAGCGATGACGGCGATGATAATAGTGGTGGGGATGGTGGCGATGTGGTGTCGGTGATGACGATGGTGGATACGGAGTTGGTGGAGTTGATGGTGGACCGCAGGGAAACAAAGGGATTGACTTATGTCCCCAGAAGAGGGATGACTCAAATATGGATGAGTCTGAGAAGGGCCCTAGCATCTCTGAGCTCTATCTAAAGAACGGTGCTTCAGGTTCGGGGAGCATGCTGATGCCAGAATTTCACTTCATCAGGATTCTAATGTCCTTTTTTTGGTCCTTTTTTGGTCAGTTGGTTAACAAAATGAAAGACTTGTAAATTCTGCATGCTTCATACTGTCTAGGACCTGGGTTGAGGAACACCTCATATTTCCTGCATTATGAATGTTCAAATAGAGTGTGCTTCTGTTACACTATCATGTTATCAGTATACATCATATGTCATCGTCATAAAAGTCATTGATGCCATGGTACCAGCAGGCGACGCATCAGTCCACACCAGGAAATGTCAATAGGAATGCCATCATGCTCTCTCACCTTGGGTTAAGAACAAGATCAATCTTTACCAGTTGTCAATGAGGGCCATTTGAGCTGTTCTGAAAGTTTACGACAACAACACAACTGTTTCGCTGATAGCAATGGCTTGATGCCAAATCCTCACACAAAAAAATGCACATTTAATCACACATTGAAGACCATTATTATTTGCTTTAAAATGTGTTATCTTTAGCAAGGATTTAGCACTCTGAACACATGATCAAACATGTACATATAACATTAGCCTAACTTCTAAAATATTTTGACAGTGGTTCATGTCAAGTGATGTGATTAGGCAGTTTGATATAGTGGCCTATATTTTAGACAGGGCTTTCAGGCAGGTGGCTTTTTGAGAAGGATTCTGCTCTGTGCTCCTGATGACATACTATTCATTCAACAGTGGGTGAACAACATGTCAACTAGTAAATTAATGTCAAACACATATAATGATATAACAAATGTGGtaccttatttatttatttccgcCACACATGACTGATTAGTGTTGAGTAAAACGACGCAGAGTAACATGGCAACTGACCGTTAAGCacgcacacattacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaca
>XM_036985715.1
TTAGTTCACAATGGAGTGAAGTTTAGTCCGCTACCAAGGTGGTTAATTTCTTTCTCAAAAGTTATTCATCAACGCTATAGACCTACCGTatgttattcttatttttttgtgTGGCAGTGTCTCCTTCTGCAGTCAATCGATTGACTTTAACGAAAAAGTGTGGTGTTTTCGACAGCTGATTTATAGAGAGACATTTCATAGGATATAACTCCAACGTGATGAAATTATGGAAAAAATGAAGCTGGATCTTTGTCCTGGAAGTCCCGGTGCCAAATTATGCATCCCGCTGAAGCAGGATTCCATCAGGGAGAATGGGTGCCAAGACCTGGAGGACTCGAAGGAGGGGAACTTCACTGGGGAAAGGGTTAAGACAGATGACGCGCCTCTGCGGAACACGCGCAACGGGACCATCATCCTAAACGGCGTTGCCAAGGAAACCGCTTACGACGCCCTTGACCTGAAAAGGGAAGTACCAGTGATCGAGCTCTTGAGGAGAGACGATATAAAGACGGGACAGCAGAGAACCGACAGTCAAACGGTACCGATCACGGAGCTTCGCAGACCACCCGTGCCGTTGCCGCTGCCGCACCGAGACGCGCTGATCGACGCTCGAATGGTTCAGCTGAGCCCAAACGCGTTCCCTCTCCCGGCGCGAGCAATGCTCTACAACTTGGCGCAACCTCTCGCTGCAATCAACAGTCTTGGAGGGGAGTCGGAACAGTACGGCATGTACCCCAGCAACAGGGTAAAGCGCCGTCCTGCGCCTTACGAGGTTGAGCTCGACGAGGGTAGGCGCATTTTAGATCTTTCTAAGTATGCTGGCCAACCAAAGATCGTAAGGCGGATCTTCACCAACAGCCGGGAGCGCTGGCGGCAGCAGAATGTCAACGGGGCGTTCTCCGAGCTCCGCAAGCTCATCCCCACCCACCCACCGGACAAGAAGCTGAGCAAGAACGAGATCCTGCGTCTGGCCATGAAGTACATCAGCTTCCTGTCCAACCTGCTGGACGACCAGGACGGAGGGGCCACCGTGGGCGTGGGTGACGGGACAGGGCTGCTGGTGGGGGGCCGTGAGGGTGGACCCCAGGGCCCTCGTCAGGACGGGGTGGGACTGGCCAGGGAGGACGACCTCCTCCTCCAGGGCACGTTGTCGCCCGGGTCCAGCTGTGGGAGTCTGCCAGACGGGGACGGCAGCCCCGAGAGCTTCACCGAGGACCAAGACTCACCTCCAGCCCAGAGAACTGTGCCCGTGCCGCGCGGTAGGGACCTACGACGCAATGCACGCCCACAAGATGGCGGCAGCCAGCGATGACGGCGATGATAATAGTGGTGGGGATGGTGGCGATGTGGTGTCGGTGATGACGATGGTGGATACGGAGTTGGTGGAGTTGATGGTGGACCGCAGGGAAACAAAGGGATTGACTTATGTCCCCAGAAGAGGGATGACTCAAATATGGATGAGTCTGAGAAGGGCCCTAGCATCTCTGAGCTCTATCTAAAGAACGGTGCTTCAGGTTCGGGGAGCATGCTGATGCCAGAATTTCACTTCATCAGGATTCTAATGTCCTTTTTTTGGTCCTTTTTTGGTCAGTTGGTTAACAAAATGAAAGACTTGTAAATTCTGCATGCTTCATACTGTCTAGGACCTGGGTTGAGGAACACCTCATATTTCCTGCATTATGAATGTTCAAATAGAGTGTGCTTCTGTTACACTATCATGTTATCAGTATACATCATATGTCATCGTCATAAAAGTCATTGATGCCATGGTACCAGCAGGCGACGCATCAGTCCACACCAGGAAATGTCAATAGGAATGCCATCATGCTCTCTCACCTTGGGTTAAGAACAAGATCAATCTTTACCAGTTGTCAATGAGGGCCATTTGAGCTGTTCTGAAAGTTTACGACAACAACACAACTGTTTCGCTGATAGCAATGGCTTGATGCCAAATCCTCACACAAAAAAATGCACATTTAATCACACATTGAAGACCATTATTATTTGCTTTAAAATGTGTTATCTTTAGCAAGGATTTAGCACTCTGAACACATGATCAAACATGTACATATAACATTAGCCTAACTTCTAAAATATTTTGACAGTGGTTCATGTCAAGTGATGTGATTAGGCAGTTTGATATAGTGGCCTATATTTTAGACAGGGCTTTCAGGCAGGTGGCTTTTTGAGAAGGATTCTGCTCTGTGCTCCTGATGACATACTATTCATTCAACAGTGGGTGAACAACATGTCAACTAGTAAATTAATGTCAAACACATATAATGATATAACAAATGTGGtaccttatttatttatttccgcCACACATGACTGATTAGTGTTGAGTAAAACGACGCAGAGTAACATGGCAACTGACCGTTAAGCacgcacacattacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaca

Function

NR:

description
T-cell acute lymphocytic leukemia protein 1-like isoform X1

GO: NA

KEGG:

id description
K09068 TAL; T-cell acute lymphocytic leukemia protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021613007.2 False 2437 mRNA 0.51 4 55203683 55209485
XM_036985714.1 False 2486 mRNA 0.50 4 55203683 55209504
XM_021613006.2 False 2410 mRNA 0.50 4 55203683 55210842
XM_036985715.1 True 2459 mRNA 0.49 4 55203683 55211103

Neighbor

gene id symbol gene type direction distance location
LOC110530155 LOC106568925 coding downstream 22903 55154678 ~ 55180780 (-)
LOC110530150 NA coding downstream 113963 55085968 ~ 55089720 (-)
LOC110530149 LOC106568933 coding downstream 119166 55074480 ~ 55084517 (-)
LOC110530144 LOC106568935 coding downstream 228537 54698833 ~ 54975146 (-)
LOC110530142 LOC106568939 coding downstream 696195 54498363 ~ 54507488 (-)
LOC118965529 NA coding upstream 647 55211750 ~ 55214733 (-)
LOC110530159 LOC106569020 coding upstream 6868 55217971 ~ 55223328 (-)
LOC110530161 LOC106568919 coding upstream 93577 55304680 ~ 55313604 (-)
LOC110530163 LOC106568918 coding upstream 124509 55335612 ~ 55337598 (-)
si:ch211-106h4.4 LOC106568915 coding upstream 212563 55423666 ~ 55456052 (-)
G723844 NA non-coding downstream 16803 55186561 ~ 55186880 (-)
G723843 LOC106569022 non-coding downstream 17556 55185627 ~ 55186127 (-)
G723814 NA non-coding downstream 62849 55139311 ~ 55140834 (-)
G723801 NA non-coding downstream 86636 55116822 ~ 55117047 (-)
G723798 NA non-coding downstream 95701 55107464 ~ 55107982 (-)
G723891 NA non-coding upstream 46559 55257662 ~ 55273903 (-)
G723956 NA non-coding upstream 166987 55378090 ~ 55378339 (-)
G723967 NA non-coding upstream 187946 55399049 ~ 55399513 (-)
G723969 NA non-coding upstream 191509 55402612 ~ 55403050 (-)
G722864 LOC106581475 other downstream 921705 54281685 ~ 54281978 (-)
G722854 NA other downstream 952137 54251114 ~ 54251546 (-)
G722761 NA other downstream 1064342 54124379 ~ 54139341 (-)
G722670 NA other downstream 1275724 53926228 ~ 53927959 (-)
G722602 NA other downstream 1347618 53803443 ~ 53856065 (-)
G723955 NA other upstream 166178 55377281 ~ 55377776 (-)
G723966 NA other upstream 185521 55396624 ~ 55396885 (-)
G724287 LOC106568908 other upstream 424435 55635538 ~ 55646014 (-)
G724400 NA other upstream 574414 55785517 ~ 55791485 (-)
G724943 LOC106604981 other upstream 909100 56120203 ~ 56128288 (-)

Expression


Co-expression Network