LOC110530159 (LOC106569020)


Basic Information

Item Value
gene id LOC110530159
gene name LOC106569020
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 55217971 ~ 55223328 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005052911.1
TAGCCAGAGAGGAAGCGGTAGCGGCCCATGTCGGTGGAAAATATGTGTCCCTCCAAGTAGGTGGCGTTTTTCGCCTACCAAGCAATGCTTTTTTGTATGGAGATCAATGAGAGTTTCGAATTTGGTCCCAAAAAAAGGAATGGGTTATTTTctacgtgaggcttatttgattgaatagaCGTTTCTTAATGCTGGTTGTTACACGAGTAATACACGTGACATCCccgcaactttgagaaaaacatTTATATCAGAGTTGGCATGGCGATTTATATTAATGACTGAGACTAGTAGCATAGCATCGCTCTCCGTTGAATACagcaatgttgcgattgtttgtgagaatgccagcaggtgtggttcccgtgggggaaaAATTCTATTGGGTGAAAGTTTCCGGTGGAGGTTGCCATGGatgccaagaaggggagtgaggaacACCACAGGGGCACaaatgttaaataaaacacccaacgtttaatgaaaatcatcaaaaagtatattgtgtgttcagatgccctgtgtggacaaagtcatggaactttatgacaatcagattaaattaactacattttcAGAGAGAAAACGTGTAAATGGTCGAATTGGACCGATTCACAAGTTTTCTTCAAGGGTGGTGGATTACATCTGTCCGGCTAATGGAGGTGCAAATCACACAAATATCGCCTTCTGCCAGCTCTTCGCATTGGACAAAAGCCTCTGATGACCGGGGCTTCCTCCTGAGCCTTGTCCTCGAGCCTGGCacactctctgcctcctctcccttacattccccctcctccccctctgctccAGGCTCTGCCGTCCATGACCTGCAGTCCAAGGTGAAGGCACTCTCCCAGAAATCCAgcgggagatagagaaagagcgaGTGGGAGGACAAGAGGGCCTTAGAGCTCCAGGCAGGGGGGCCTGTCTCGTCCCAGGCAGAAGGCCCGCAGTAGGGGGAGGTGCCACTGCCCGTGCCCTCCCGGTGCTTTGACCAAAGGAGGAGGTCCAGCAGTAGTGAAGACGATGTGGTGCAGAAGATGGTGGCCAGGGTACAGCTCAACACCTACCTGACTGAACcacagagggagcaggagagcagGGGTACCATGGGGAAGGGggcagagaagggggagaggggaggcctGGCTGGATGTGTGCCAGGGCAGCCTCGTGGGTTCGGGGAGGGGGCCAGCTTGGAGAGCTTGGACAACATCCAGTCGGACAGCACCGGCGGAAAGATGGAGGACCCCCCTCCTTCTCCAAAACCTGCTTCTTCGTCCTCCTCtgcctcatcttcctcctcatctccctcctctcacagACACTGGGCACCCCCTAAAGGCTTCTGCAGGGTGGCACGCTCAGAGACTCTGAACGGAGTAGCCACTCAGTCTACCGTAGGCACTCAGACTACGATGCCCATAGCCTCGTCATTTGTATCTCTGAAGGACAAACCCCCTGTTAATGCCACCCTCTCAAGGACAAGGACAAGGGCTGTTGGGACATGCTATGTTCGGACAGCCTGCACTGCTACccggagaggggaagagaaaggtgCCGTGGACATCCTGTACCTGTGTGTCGACCAGATAGACAACAGAGATGGCATGATCATGAAGTTCCAGTGAAGATATGAAATGTTGGTACGCCTTGTTGTAAGACAAGTCTGGGTACTTGGAGAAGTTAACTGAAAAAGATAGATACTAAATTCCCCTTGCTGACCGCTCATGGTTGAAGAACATGGTACATGGTAGCACGTGTGCTGTGGGACAGAGTGTTCATCAAGAGTGTGGGAGTGTCTCTAGAGACATCTGCCTTTGCGGGACCATGAGTGGGATTCAGCCATTCTACAACAAGTGCTGCCCCGCTCAAAGACAACCCTGATCCCAAATCATCCCAAGAAACTATTCAAGTATCCCACAGGGTGATTGCGCCCTCTCCTGGCAATGATTGGTCACACGTCAACCCTGACAAAATTCCCCTGAGCCCCAGACACGAGTGGGCCATGCTACTGCTGGAGAAGGCTTGGTTAAAAGCACACTTCAATCACGCCAAAGGGGAACGCCCCCCAACCCGCCGTGCCCATTCTGCCCAGATATATAACCCGTAAGCCAGCTGTGCCCTGCTGTCAATCAACTGTATTTGTTCCTTTGTCGATCTCTATCAACACCCTCTTCTGTTCACCTGTCTGACTACCTGTatcttttgagaagtgtaacttgtTCCAAAAAACccttttgatttatttcacaaaatgtttacattctgtcataaagagcacatgtttaacataataaaaaaacatGCTTTCCC
>TU822310
AGTGAAGATATGAAATGTTGGTACGCCTTGTTGTAAGACAAGTCTGGGTACTTGGAGAAGTTAACTGAAAAAGATAGATACTAAATTCCCCTTGCTGACCGCTCATGGTTGAAGAACATGGTACATGGTAGCACGTGTGCTGTGGGACAGAGTGTTCATCAAGAGTGTGGGAGTGTCTCTAGAGACATCTGCCTTTGCGGGACCATGAGTGGGATTCAGCCATTCTACAACAAGTGCTGCCCCGGTCACACGTCAACCCTGACAAAATTCCCCTGAGCCCCAGACACGAGTGGGCCATGCTACTGCTGGAGAAGGCTTGGTTAAAAGCACACTTCAATCACGCCAAAGGGGAACGCCCCCCAACCCGCCGTGCCCATTCTGCCCAGATATATAACCCGTAAGCCAGCTGTGCCCTGCTGTCAATCAACTGTATTTGTTCCTTTGTCGATCTCTATCAACACCCTCTTCTGTTCACCTGT

Function

NR:

description
PREDICTED: uncharacterized protein LOC106599085 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005052911.1 False 2322 mRNA 0.50 6 55217971 55223328
TU822310 True 479 lncRNA 0.50 3 55218096 55220955

Neighbor

gene id symbol gene type direction distance location
LOC118965529 NA coding downstream 3238 55211750 ~ 55214733 (-)
LOC110530157 LOC106568924 coding downstream 6868 55203683 ~ 55211103 (-)
LOC110530155 LOC106568925 coding downstream 37191 55154678 ~ 55180780 (-)
LOC110530150 NA coding downstream 128251 55085968 ~ 55089720 (-)
LOC110530149 LOC106568933 coding downstream 133454 55074480 ~ 55084517 (-)
LOC110530161 LOC106568919 coding upstream 81352 55304680 ~ 55313604 (-)
LOC110530163 LOC106568918 coding upstream 112284 55335612 ~ 55337598 (-)
si:ch211-106h4.4 LOC106568915 coding upstream 200338 55423666 ~ 55456052 (-)
LOC110530166 arpc5 coding upstream 237868 55461196 ~ 55468070 (-)
odr4 odr4 coding upstream 310288 55533616 ~ 55544134 (-)
G723844 NA non-coding downstream 31091 55186561 ~ 55186880 (-)
G723843 LOC106569022 non-coding downstream 31844 55185627 ~ 55186127 (-)
G723814 NA non-coding downstream 77137 55139311 ~ 55140834 (-)
G723801 NA non-coding downstream 100924 55116822 ~ 55117047 (-)
G723798 NA non-coding downstream 109989 55107464 ~ 55107982 (-)
G723891 NA non-coding upstream 34334 55257662 ~ 55273903 (-)
G723956 NA non-coding upstream 154762 55378090 ~ 55378339 (-)
G723967 NA non-coding upstream 175721 55399049 ~ 55399513 (-)
G723969 NA non-coding upstream 179284 55402612 ~ 55403050 (-)
G723970 NA non-coding upstream 181216 55404544 ~ 55404942 (-)
G722864 LOC106581475 other downstream 935993 54281685 ~ 54281978 (-)
G722854 NA other downstream 966425 54251114 ~ 54251546 (-)
G722761 NA other downstream 1078630 54124379 ~ 54139341 (-)
G722670 NA other downstream 1290012 53926228 ~ 53927959 (-)
G722602 NA other downstream 1361906 53803443 ~ 53856065 (-)
G723955 NA other upstream 153953 55377281 ~ 55377776 (-)
G723966 NA other upstream 173296 55396624 ~ 55396885 (-)
G724287 LOC106568908 other upstream 412210 55635538 ~ 55646014 (-)
G724400 NA other upstream 562189 55785517 ~ 55791485 (-)
G724943 LOC106604981 other upstream 896875 56120203 ~ 56128288 (-)

Expression


Co-expression Network