LOC110530170 (LOC106568909)


Basic Information

Item Value
gene id LOC110530170
gene name LOC106568909
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 55567843 ~ 55614934 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021613029.2
GCTGCGCGAACTATCAACATCTGTCGCTGTATTTGGTGGGCGATGGCTTTGCATGGTGTATCTGTGTCGGCAGATTAAGCAAATAACGTTATCATTTTGGAGAATCCCATTTTTTCAGCCACCCACTCCACTTGGCCCCTCTGTGTGGTAGTCCAACCAGGCAACTGAGAAGAGAATAATTCAAGCCGGGAACGGCGTTCACAGAGATGCTGCTCTGACGGCTAAACAAGAACATCCATCGTTGAGAGAAAAAACGGACGAAAATAATAACTCCCATACAGTTATGGATAATAATGAATCGTGTCTACATCTAAATTCTTCTGTTCAGGTCTCCCACCTGAGCTCCACCCCCTCACAGCCCCTTAGTATCATGGTGGGCCCCCCtcaccctcaccaccaccacccccatcaccatcaccacccctCCGTCATCAGCACCACCGTCAACCCCGGGCGGCCCCACCCATCCCCCATAAGCACCCTGGGCTCGCCATTCAATGGGCTGGGCGGCTCGCCGTACTCCGTCATCACGTCGTCCTCTCTGGGCTCGCCAGGTGTCTCCATGCCCCACACGCCCACCATAGGCTTCAGCACGCTCTCCAGCCCACAGGTAAACTCTCTGAACAGTGTGAGCAGCAGTGAGGACATCAAGCCTCCTCCAGGCCTGGCTGGACTGGGTCACATGAACAGCTACGGCTGCATGAGCCCAGGGTCCATGTCCAAGCACATCTGTGCCATCTGTGGGGACCGATCCTCAGGGAAACACTATGCCGTGTACAGCTGTGAAGGCTGTAAAGGCTTCTTCAAAAGAACCATCAGGAAGGACCTCACTTACACGTGTCGAGACAGCAAGGAGTGCCTGATCGATAAGCGCCAACGCAACCGCTGCCAATACTGTCGCTACCAGAAGTGTCTGGCCATGGGCATgaagagagaagCTGTGCAGGAGGAGCGTCAGCGGGGCCGTGACAAGAGTGATAACGAGGTGGAGTCAACCAGTAGTTTCAACGGGGACATGCCTGTCGAGAAGATATTGGACGCGGAGTTGGCCATCGAACCCAAGACTGAAGCTTACATGGAGGCCAGCACAGGCAACTCTACGAACGACCCGGTCACCAACATCTGCCAGGCAGCAGACAAGCAGCTATTCACCCTGGTGGAGTGGGCCAAAAGGATCCCCCACTTCTCTGAGCTGCCCCTGGACGACCAGGTCATCTTATTACGAGCAGgctgGAATGAGCTGCTCATCGCCTCGTTCTCCCATCGCTCTGTGACAGTGAAGGACGGGATCCTCCTGGCCACGGGCCTCCACGTCCACCGCAGCAGCGCCCACAGCGCAGGAGTGGGCTCCATCTTTGACAGAGTGCTGACGGAGCTGGTGTCTAAGATGAAAGACATGCAGATGGACAAGACTGAGCTGGGCTGCCTCCGAGCCATCGTCCTCTTCAACCCAGATGCCAAGGGCCTGTCTAATCCTACAGAGGTGGAGGCCCTGAGAGAGAAGGTGTACGCCTCGCTGGAGTCCTACACTAAACATAGATACCCAGAGCAGCCTGGCAGATTTGCCAAGCTGTTGCTGCGTCTGCCTGCACTGCGCTCCATCGGCCTCAAGTGTCTGGAGCACCTCTTCTTCTTCAAGCTGATAGGAGATACGCCCATAGACACGTTCCTCATGGAAATGCTTGAAGCGCCGCACCAGATCACATGACACGAGTTGTATCCATTGTAAATACCCCCTGAACCCAATTCCCAGATCCCCTACCCTTACCCCAGAGTGCAACTGCTATGAAATCAAACTTGAGAGTTCTTAACTTGCATATTTTGTACCAACCACAATTAATAATGTGAAAATAAAACGTTCCTATTGGTATTTTAAGAAAATGCAACACTGTAAAAAGTGAATTCTAaagaacaattttttttttttgtaaatagaaGAGTATTAATTATCAGATCTAGCAACAACTGAATGCAACATGAAGTCTTATTTTATTCAGTGATGAATAGTATGAAATACAATGTCACTAGCATAGAATGTCTGTGGGAATAAAATACAAAAGACGACTTTGAACGTGATGTCCGGTCAAGTCA
>XM_021613030.2
GCTGCGCGAACTATCAACATCTGTCGCTGTATTTGGTGGGCGATGGCTTTGCATGGTGTATCTGTGTCGGCAGATTAAGCAAATAACGTTATCATTTTGGAGAATCCCATTTTTTCAGCCACCCACTCCACTTGGCCCCTCTGTGTGGTAGTCCAACCAGGCAACTGAGAAGAGAATAATTCAAGCCGGGAACGGCGTTCACAGAGATGCTGCTCTGACGGCTAAACAAGAACATCCATCGTTGAGAGAAAAAACGGACGAAAATAATAACTCCCATACAGTTATGGATAATAATGAATCGTGTCTACATCTAAGTCTCCCACCTGAGCTCCACCCCCTCACAGCCCCTTAGTATCATGGTGGGCCCCCCtcaccctcaccaccaccacccccatcaccatcaccacccctCCGTCATCAGCACCACCGTCAACCCCGGGCGGCCCCACCCATCCCCCATAAGCACCCTGGGCTCGCCATTCAATGGGCTGGGCGGCTCGCCGTACTCCGTCATCACGTCGTCCTCTCTGGGCTCGCCAGGTGTCTCCATGCCCCACACGCCCACCATAGGCTTCAGCACGCTCTCCAGCCCACAGGTAAACTCTCTGAACAGTGTGAGCAGCAGTGAGGACATCAAGCCTCCTCCAGGCCTGGCTGGACTGGGTCACATGAACAGCTACGGCTGCATGAGCCCAGGGTCCATGTCCAAGCACATCTGTGCCATCTGTGGGGACCGATCCTCAGGGAAACACTATGCCGTGTACAGCTGTGAAGGCTGTAAAGGCTTCTTCAAAAGAACCATCAGGAAGGACCTCACTTACACGTGTCGAGACAGCAAGGAGTGCCTGATCGATAAGCGCCAACGCAACCGCTGCCAATACTGTCGCTACCAGAAGTGTCTGGCCATGGGCATgaagagagaagCTGTGCAGGAGGAGCGTCAGCGGGGCCGTGACAAGAGTGATAACGAGGTGGAGTCAACCAGTAGTTTCAACGGGGACATGCCTGTCGAGAAGATATTGGACGCGGAGTTGGCCATCGAACCCAAGACTGAAGCTTACATGGAGGCCAGCACAGGCAACTCTACGAACGACCCGGTCACCAACATCTGCCAGGCAGCAGACAAGCAGCTATTCACCCTGGTGGAGTGGGCCAAAAGGATCCCCCACTTCTCTGAGCTGCCCCTGGACGACCAGGTCATCTTATTACGAGCAGgctgGAATGAGCTGCTCATCGCCTCGTTCTCCCATCGCTCTGTGACAGTGAAGGACGGGATCCTCCTGGCCACGGGCCTCCACGTCCACCGCAGCAGCGCCCACAGCGCAGGAGTGGGCTCCATCTTTGACAGAGTGCTGACGGAGCTGGTGTCTAAGATGAAAGACATGCAGATGGACAAGACTGAGCTGGGCTGCCTCCGAGCCATCGTCCTCTTCAACCCAGATGCCAAGGGCCTGTCTAATCCTACAGAGGTGGAGGCCCTGAGAGAGAAGGTGTACGCCTCGCTGGAGTCCTACACTAAACATAGATACCCAGAGCAGCCTGGCAGATTTGCCAAGCTGTTGCTGCGTCTGCCTGCACTGCGCTCCATCGGCCTCAAGTGTCTGGAGCACCTCTTCTTCTTCAAGCTGATAGGAGATACGCCCATAGACACGTTCCTCATGGAAATGCTTGAAGCGCCGCACCAGATCACATGACACGAGTTGTATCCATTGTAAATACCCCCTGAACCCAATTCCCAGATCCCCTACCCTTACCCCAGAGTGCAACTGCTATGAAATCAAACTTGAGAGTTCTTAACTTGCATATTTTGTACCAACCACAATTAATAATGTGAAAATAAAACGTTCCTATTGGTATTTTAAGAAAATGCAACACTGTAAAAAGTGAATTCTAaagaacaattttttttttttgtaaatagaaGAGTATTAATTATCAGATCTAGCAACAACTGAATGCAACATGAAGTCTTATTTTATTCAGTGATGAATAGTATGAAATACAATGTCACTAGCATAGAATGTCTGTGGGAATAAAATACAAAAGACGACTTTGAACGTGATGTCCGGTCAAGTCA

Function

NR:

description
retinoic acid receptor RXR-gamma-A-like isoform X1

GO: NA

KEGG:

id description
K08524 RXRA, NR2B1; retinoid X receptor alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021613029.2 False 2091 mRNA 0.52 10 55567843 55614934
XM_021613030.2 True 2077 mRNA 0.52 10 55567843 55614934

Neighbor

gene id symbol gene type direction distance location
LOC118965626 NA coding downstream 3744 55555878 ~ 55564099 (-)
odr4 odr4 coding downstream 23709 55533616 ~ 55544134 (-)
LOC110530166 arpc5 coding downstream 99773 55461196 ~ 55468070 (-)
si:ch211-106h4.4 LOC106568915 coding downstream 111791 55423666 ~ 55456052 (-)
LOC110530163 LOC106568918 coding downstream 230245 55335612 ~ 55337598 (-)
LOC110530171 LOC106568907 coding upstream 68691 55683625 ~ 55688984 (-)
LOC110530174 LOC106568905 coding upstream 115500 55730434 ~ 55764053 (-)
LOC110530175 LOC106569017 coding upstream 154492 55769426 ~ 55774173 (-)
LOC110530176 LOC106568901 coding upstream 184974 55799908 ~ 55814928 (-)
LOC110530178 LOC106568902 coding upstream 200450 55815384 ~ 55839341 (-)
G724246 NA non-coding downstream 20726 55546847 ~ 55547117 (-)
G724245 NA non-coding downstream 21848 55545734 ~ 55545995 (-)
G724042 NA non-coding downstream 57279 55510338 ~ 55510564 (-)
G724020 NA non-coding downstream 67983 55499466 ~ 55499860 (-)
G723979 NA non-coding downstream 97835 55423054 ~ 55470008 (-)
G724366 LOC106568906 non-coding upstream 102930 55717864 ~ 55718713 (-)
G724370 NA non-coding upstream 106150 55721084 ~ 55721324 (-)
G724371 NA non-coding upstream 107169 55722103 ~ 55722418 (-)
G724372 NA non-coding upstream 108043 55722977 ~ 55723486 (-)
G724373 NA non-coding upstream 109083 55724017 ~ 55724208 (-)
G723966 NA other downstream 170958 55396624 ~ 55396885 (-)
G723955 NA other downstream 190067 55377281 ~ 55377776 (-)
G722864 LOC106581475 other downstream 1285865 54281685 ~ 54281978 (-)
G722854 NA other downstream 1316297 54251114 ~ 54251546 (-)
G722761 NA other downstream 1428502 54124379 ~ 54139341 (-)
G724287 LOC106568908 other upstream 20604 55635538 ~ 55646014 (-)
G724400 NA other upstream 170583 55785517 ~ 55791485 (-)
G724943 LOC106604981 other upstream 505269 56120203 ~ 56128288 (-)
G725007 LOC106568897 other upstream 604582 56219516 ~ 56232939 (-)
LOC110530186 tm56b other upstream 759719 56374588 ~ 56386555 (-)

Expression


Co-expression Network