LOC110530175 (LOC106569017)


Basic Information

Item Value
gene id LOC110530175
gene name LOC106569017
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 55769426 ~ 55774173 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021613040.2
TTGGAGAAGACTTGTACATAGCATTTGTTTATTGAGTTAATGCCAAATAATAGAAGGGGACAtttaacatgtgtgtgtgtgtgtttcaaagtAGATTAGAGAAATATTGACAATTATAGAATGGAACATGTCTGTGTGGATTTGCAGGAAACAATTTGGTCTATTACTCCGACATTATAGACTAGACTGTGCTCTGAGAAGGAAAGTAAGTCAGGCACTGGGAAACCACAGAGGTGTGCTGTTTTGAGCTTGACTTGTCAGTTGCAGACATGTAGATAGAGGAACCCGGTTAGACAGAAGGAGCTATCGAAGTTGAACATTGTGACAGAGTTAGATGAGAGGAGGGGCATTTATAAAGTGTATGTCATAAACAAATGTGTCAGGTATAAAAGGCTATGTGCATTGTATGATACTCAGAGCTCTCGTGAATAAAGAATCTGACTCTTGAAAGCTTGGTCTCCGTCTGCTTCATTTAAACCAGAACCTTACAAACTCTGGGTTGCAGACTGAGTAGATTAATTAAAGTTCCGTTTaagaacattgagaacataattctcttaACACATAGTCAGCTATCGACTGGACAGCCAGTTATCTAGACAGGCCTACATTTGAGCTGTTGAAGTGAGATAGGTACAATGGAGGACAGAAGCCTTCCTCGTGTTGTGGTCATTACACTGTCTGTGCTGATCTACATTTCTGCTTTGGCAATAAATGCCATGGCAGGAGCTGGAAAGGGACCATTCCATTGGAGTACAGGGAACATCTCCAGGAAGTATGAGACTGACATAACTCCGTCCGGATGGACCTTCTCCATCTGGGGGCTTATCTACACCTGGCTGGCCCTCATGGTCATGTATATCATCTCCTTGATCTACAGAGGGAGCTGGACCCTCTCTGTGCTACTGTGCGGTTTCTACCTGTCCTGGATAGTTAACATGGCCCTCAACATGACCTGGCTGCTCCTATGGGATCAAGAGCAGGTGACTGCTGCATTGATTGTAATGGCGACCATTGCTGTCACCTACTACTCCGTGGGCTTCTTCTCCTGCTATGGGCTGAGTGTTTACGGAGCCTGGCTCAGCCAGAACCACCCCTGGGACCTCTGGTGCATTCGTTTGCTGgTGCAAAATAGCATTGCGCTGTACAGCACGTGGACAACTATCGCCACTTTGATCAACTTCACTCTGGTGTTGGACCTCTCTGGAGTGGCAAGGAGCACTGCAGCCACCGTGTCTCTCTGCATCCTACTGGTGGAGGTGATCGGATGATTTGGTATTGAGAACTTCCTGCTGGATCAGCATGTGAGGTACATCCTGACTATTTACCCTGTGGTGATCATTGCTCTGGTTGGAAACGTGACCAAGCACTACGGCCCTGCAGCACCAAGCGCTAACGCTATCTTCATGGTTGTGCTCTTGGTGATTTCCTGTGTGCTCCTCCTGGTGGTGCGAGTCTCCCTGGTGATCAGGAGAACCAGGAACCAGACCCTTCACCCGGAGGCTCTGACCTCACCCAGCAGCCTGTCCAAGAAGCAGAGGAAGATTCTCATGTAGACAACTGacgattgtgacagaagatcccaccacccacAGACCAAGCAGCGTACCCAGGAGGAGCAGGGAGTCAATAgaacagtgcgaggagggataccggagaatggagttggcgaggAGTATGCGGCAACGCAGGCATTTGGAa
>XM_021613039.2
TTGGAGAAGACTTGTACATAGCATTTGTTTATTGAGTTAATGCCAAATAATAGAAGGGGACAtttaacatgtgtgtgtgtgtgtttcaaagtAGATTAGAGAAATATTGACAATTATAGAATGGAACATGTCTGTGTGGATTTGCAGGAAACAATTTGGTCTATTACTCCGACATTATAGACTAGACTGTGCTCTGAGAAGGAAAGTAAGTCAGGCACTGGGAAACCACAGAGGTGTGCTGTTTTGAGCTTGACTTGTCAGTTGCAGACATGTAGATAGAGGAACCCGGTTAGACAGAAGGAGCTATCGAAGTTGAACATTGTGACAGAGTTAGATGAGAGGAGGGGCATTTATAAAGTGTATGTCATAAACAAATGTGTCAGGTATAAAAGGCTATGTGCATTGTATGATACTCAGAGCTCTCGTGAATAAAGAATCTGACTCTTGAAAGCTTGGTCTCCGTCTGCTTCATTTAAACCAGAACCTTACAAACTCTGGGTTGCAGACTGAGTAGATTAATTAAAGTTCCGTTTaagaacattgagaacataattctcttaACACATAGTCAGCTATCGACTGGACAGCCAGTTATCTAGACAGGCCTACATTTGAGCTGTTGAAGTGAGATAGGTACAATGGAGGACAGAAGCCTTCCTCGTGTTGTGGTCATTACACTGTCTGTGCTGATCTACATTTCTGCTTTGGCAATAAATGCCATGGCAGGAGCTGGAAAGGGACCATTCCATTGGAGTACAGGGAACATCTCCAGGAAGTATGAGACTGACATAACTCCGTCCGGATGGACCTTCTCCATCTGGGGGCTTATCTACACCTGGCTGGCCCTCATGGTCATGTATATCATCTCCTTGATCTACAGAGGGAGCTGGACCCTCTCTGTGCTACTGTGCGGTTTCTACCTGTCCTGGATAGTTAACATGGCCCTCAACATGACCTGGCTGCTCCTATGGGATCAAGAGCAGGTGACTGCTGCATTGATTGTAATGGCGACCATTGCTGTCACCTACTACTCCGTGGGCTTCTTCTCCTGCTATGGGCTGAGTGTTTACGGAGCCTGGCTCAGCCAGAACCACCCCTGGGACCTCTGGTGCATTCGTTTGCTGgTGCAAAATAGCATTGCGCTGTACAGCACGTGGACAACTATCGCCACTTTGATCAACTTCACTCTGGTGTTGGACCTCTCTGGAGTGGCAAGGAGCACTGCAGCCACCGTGTCTCTCTGCATCCTACTGGTGGAGGTGATCGGATGATTTGGTATTGAGAACTTCCTGCTGGATCAGCATGTGAGGTACATCCTGACTATTTACCCTGTGGTGATCATTGCTCTGGTTGGAAACGTGACCAAGCACTACGGCCCTGCAGCACCAAGCGCTAACGCTATCTTCATGGTTGTGCTCTTGGTGATTTCCTGTGTGCTCCTCCTGGTGGTGCGAGTCTCCCTGGTGATCAGGAGAACCAGGAACCAGACCCTTCACCCGGAGGCTCTGACCTCACCCAGCAGCCTGTCCAAGAAGCAGAGGAAGATTCTCATGTAGACAACTGGTAcacacttacttacttacttactgactttattgtccccatggggacattttgttgtAGTGTCATATACACGTTTAAAGTGgcatttaaatacaaaacaaaattgacaatacaactttcataacagttacataccaataaaacattaaaaaaatataaataataaagacaagcctgctggccttactgagtcgataggaacattagcccgagctatttaggagggatatcacacctggcacaaatgattgtctggttctgtttttcctgctgaggggtgccctatacctACAGGGGGTGGCTTGTgtctaaaatgattttgtgagccttgcggaggccactgaccttaaagatctcatccatgcctgtctgtttgactccaagtaccttgcttgctgtggtgataatccttctcagcatatttctctggctgacagtggcattgccaaaccaacaaacaatacaaaaagttcAAATACTCTCAATGAAAGATTGGTaaaacagagtcagtatagta

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021613040.2 False 1701 mRNA 0.48 8 55769426 55774173
XM_021613039.2 True 2080 mRNA 0.45 7 55770348 55774173

Neighbor

gene id symbol gene type direction distance location
LOC110530174 LOC106568905 coding downstream 5373 55730434 ~ 55764053 (-)
LOC110530171 LOC106568907 coding downstream 80442 55683625 ~ 55688984 (-)
LOC110530170 LOC106568909 coding downstream 154492 55567843 ~ 55614934 (-)
LOC118965626 NA coding downstream 205327 55555878 ~ 55564099 (-)
odr4 odr4 coding downstream 225292 55533616 ~ 55544134 (-)
LOC110530176 LOC106568901 coding upstream 25735 55799908 ~ 55814928 (-)
LOC110530178 LOC106568902 coding upstream 41211 55815384 ~ 55839341 (-)
LOC110530179 LOC106568900 coding upstream 98780 55872953 ~ 55896342 (-)
LOC110530183 LOC106568896 coding upstream 500918 56275091 ~ 56294377 (-)
LOC110530186 tm56b coding upstream 600415 56374588 ~ 56386555 (-)
G724398 NA non-coding downstream 4872 55764323 ~ 55764554 (-)
G724373 NA non-coding downstream 45218 55724017 ~ 55724208 (-)
G724372 NA non-coding downstream 45940 55722977 ~ 55723486 (-)
G724371 NA non-coding downstream 47008 55722103 ~ 55722418 (-)
G724370 NA non-coding downstream 48102 55721084 ~ 55721324 (-)
G724406 LOC106568904 non-coding upstream 18865 55793038 ~ 55793818 (-)
G724416 NA non-coding upstream 51862 55826035 ~ 55826459 (-)
G724584 NA non-coding upstream 81306 55855479 ~ 55857407 (-)
G724594 NA non-coding upstream 94026 55868199 ~ 55868491 (-)
G724595 NA non-coding upstream 94380 55868553 ~ 55868787 (-)
G724287 LOC106568908 other downstream 123412 55635538 ~ 55646014 (-)
G723966 NA other downstream 372541 55396624 ~ 55396885 (-)
G723955 NA other downstream 391650 55377281 ~ 55377776 (-)
G722864 LOC106581475 other downstream 1487448 54281685 ~ 54281978 (-)
G722854 NA other downstream 1517880 54251114 ~ 54251546 (-)
G724400 NA other upstream 11344 55785517 ~ 55791485 (-)
G724943 LOC106604981 other upstream 346030 56120203 ~ 56128288 (-)
G725007 LOC106568897 other upstream 445343 56219516 ~ 56232939 (-)
G725280 LOC106568997 other upstream 814170 56588343 ~ 56589271 (-)

Expression


Co-expression Network