LOC110530178 (LOC106568902)


Basic Information

Item Value
gene id LOC110530178
gene name LOC106568902
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 55815384 ~ 55839341 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021613046.2
CCACACACTGTACCTGACTGCCGCGTTGTGCGGGACAGAGCACTGTCCACTTGAGAAGTATAGTGAATTTGAGAATTTGAGCCACCAAGGCATTTATAATCCATATCCTGCCTTTGTTCACTTATATAACTGGGTCAGTATGGAAGAGGCAGAACTGGTAAAGGACCGACTCCAAGCAATAACGGATAAGAGAAAAGTCCAAGAAGACATTGTTCATAAAAAGCTGGAAATAGACCAGGAGAGGTTAAAGCTTCAGCACTTAAAGAAAAAGTCTCTGAGGGAACAGTGGCTCATGGATGGAACGAGCAACCAAAgcccacagcagagagagactttGAGGGgagatcaacaacaaactaaacTCCTCCAGACCagcatccacagGATGGAGAAAGAGATTGAGGCTCTGGAGAGGGAAGAGACAATGATTTCGAAAAATGAGGGCTTCATACTGAAGAGGCTGAAAGCTATCGAGAAAACACCTGAGGAGATAATAAAGGACGCAAAGGAGAATTTCCAAGAAGAGCCAATCCATATCAACCCAGCTACTCCAGATGCCCCAAAGTCCTGCAAACCTCCAATCTCAAAGAAGCAGTCCTTTGAATCTAATAAGGACACACCCAAACAAAccatGTTTGCCATGGAGATCAACGTCCAGAAGGATCTCCGTACCGGGGAGACCCGGGTCCTGTCCACATCCACTGTCACCCCCCAGGTGCTCCAGCAGAGAGGGGTCAAAGTCTATGACGACGGCCGCAAGTCTGTCTATGCCCTGCGGTCTGCCGAGTCTCAGCTGGGGGATGGTTCTAACAGAGTGGACGAGCTCAGCGCTATGGAGGTGGAGGTTCTGCTCAGAGCAGCTACAGAGCAGAAGAAGTCTCAAAGCGGCCCACTGGGCCACCAAGGCCATCAGGAATCAGTGTCTGCATTCTCCACCAACTGTGGCCCACAGAGCCACCAGAAGCCAACATTACCTGCATTCTCCACCCCCCGTGGCTCTCGGGGCCACCATGAGCTCAGCCCTATGGAGGTGGCGGAGCAGCTCAGAAAGGGTATAGTGCAGAAGATGCCTCAAAGCGGTGCTTTCCCAAAAGACCACCGGGGCCACCAGGAATCAGTGCCTGCATTCTCCAACACCTGCAGCTGGAGGGCCTCAGTCCCCAACAGACCCCAACAGAGTAATGCTAAAGTCATCCACGAAACCAATGGGAATGGGTATCAGCAAGAGTCGTATAAGCGTGATGTCCTCTCCAGGAAGGAGCTCCACTATATTGACGGAGTCCACAACTCAGGGCTGGAGATTCTTTCCTCCTCCCCTCACATTCCAGTCCATTATTTCATTGGCAGGCAGGATGAAGAGTACTACCAGCCAAACAACGGGTATAACCAGAATCCTTTCTCTTATGGTGTGGAGAAAGGGTTCCCCACCGACGACTTCTACCATAGCCCTAGAGAGAACCCGCGAGGAGGGATGTTTTACGACTCATCAGTTGAAATGGACCTGAGGCCGTCTCCGATCTACCAGGAAGACACGCACTTCAGTATCCTGAACACCATGGACACGTCCGAGCCTGTCACCGCCATCTTTATGGGCTACCAGACCGCAGAGGATGGCAGTGGACGTGGCCTTGGATATGAAGGATCCATCCGGGCCGAGCTTGTCGTCATTGGCGACGAGGATGGGGTGGACGAGAGTAACCCTCAGTTTAACACCTACACCGCGGATGGCTATAACAACCGGGGCTACCATCACTGTCAACCTCAACAGAACTTAATCAAATACATGGCAGAGCCCACAGCTAATTTTAACTCAAACAATGCATCACCGTACACAGCATCAAGGAATGTGGTCTATCCTGGTCAACAGGCCAAAGAGTCACACTACCTGTATTCAGACGGACAGTCCGACGAGGACGGGACAGAGAAGCACTCTGCCCCAGCTTCAAGTACAAGTATGGAGAAACCTGAACAGTTTGTGTAAAAATACACCATGCAAGACTCAGCAAACCTGCACGTTCCATGACAAGAGAAGAAGAAAACCAACTTTGCACAAAACATTcaactaacagtaaaatgcttctGAGATGCTAAAACCAGAGCCTTGTATTTGGATAATCCTCAATATATTCTCAATGTAAGGATGTGGCTAATACTGTAAAACATATGTTTGCTCATAACGTTTCCTTACACAGCTGAATATATACTAATGATGTCATTTAGAGAGAAAGAAACCAGCCGAAAAGTAGACTTTTGAATTGAATCTCTGATCTTAAATGTTAAATGTTCCTGAAGATACAAGTGCCTCTGATGTTTACTGTACTCTCTAGCCTTTTATGCTGCTGTCGGCTACTAGTCAGCACTTTTGATATAATAATAAAACCTTTATGGGAGTGCCTCAATGTAATATGCTGTTGAAACTGTAACCTGGGAGCATATTTGTAAAAGCTAATCATGCTAACAAAACAATTAAAAAGCAAATTGTCAGACAAC

Function

NR:

description
uncharacterized protein LOC110530178

GO: NA

KEGG:

id description
K16519 AKAP2; A-kinase anchor protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021613046.2 True 2490 mRNA 0.48 9 55815384 55839341

Neighbor

gene id symbol gene type direction distance location
LOC110530176 LOC106568901 coding downstream 456 55799908 ~ 55814928 (-)
LOC110530175 LOC106569017 coding downstream 41211 55769426 ~ 55774173 (-)
LOC110530174 LOC106568905 coding downstream 51331 55730434 ~ 55764053 (-)
LOC110530171 LOC106568907 coding downstream 126400 55683625 ~ 55688984 (-)
LOC110530170 LOC106568909 coding downstream 200450 55567843 ~ 55614934 (-)
LOC110530179 LOC106568900 coding upstream 33612 55872953 ~ 55896342 (-)
LOC110530183 LOC106568896 coding upstream 435750 56275091 ~ 56294377 (-)
LOC110530186 tm56b coding upstream 535247 56374588 ~ 56386555 (-)
LOC110530191 LOC106568892 coding upstream 630800 56470141 ~ 56486904 (-)
LOC110530189 LOC106568891 coding upstream 665954 56505295 ~ 56522597 (-)
G724406 LOC106568904 non-coding downstream 21566 55793038 ~ 55793818 (-)
G724398 NA non-coding downstream 50830 55764323 ~ 55764554 (-)
G724373 NA non-coding downstream 91176 55724017 ~ 55724208 (-)
G724372 NA non-coding downstream 91898 55722977 ~ 55723486 (-)
G724371 NA non-coding downstream 92966 55722103 ~ 55722418 (-)
G724584 NA non-coding upstream 16138 55855479 ~ 55857407 (-)
G724594 NA non-coding upstream 28858 55868199 ~ 55868491 (-)
G724595 NA non-coding upstream 29212 55868553 ~ 55868787 (-)
G724602 NA non-coding upstream 44314 55883655 ~ 55883861 (-)
G724400 NA other downstream 23899 55785517 ~ 55791485 (-)
G724287 LOC106568908 other downstream 169370 55635538 ~ 55646014 (-)
G723966 NA other downstream 418499 55396624 ~ 55396885 (-)
G723955 NA other downstream 437608 55377281 ~ 55377776 (-)
G722864 LOC106581475 other downstream 1533406 54281685 ~ 54281978 (-)
G724943 LOC106604981 other upstream 280862 56120203 ~ 56128288 (-)
G725007 LOC106568897 other upstream 380175 56219516 ~ 56232939 (-)
G725280 LOC106568997 other upstream 749002 56588343 ~ 56589271 (-)
penka LOC106569009 other upstream 990300 56828799 ~ 56840147 (-)

Expression


Co-expression Network