LOC110530183 (LOC106568896)


Basic Information

Item Value
gene id LOC110530183
gene name LOC106568896
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 56275091 ~ 56294377 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021613049.2
TTCATGACAGCATTTGCGACCATTTTGCTGACGTGCTTGTGTGTCTGAGTGGAGCTGAGGTTTAAAGAATAAATATATACACGAAAATAAACCTAATTCGGCAATGGACGGCATTGCCACTGATGTTGCAGTTGGCGTGAAGAGAGGCTCAGATGAATTAAATCTCTACAGCACCAGCCCTAACTCTGTGACTGCTAACGGCAATGACAGCAGTAAAAAACTGAGAGTAGAGGACAGGATGGAGAGTCCCCCATCCCGGGTGCTCCACATCCGGAAGCTGCCCAGTGAGGTGTCTGAGACGGAGGTCATCGCCCTGGGCCTACCGTTCGGCAAGGTCACCAATATCCTCATGCTGAAGGGCAAAAATCAGGCGTTCCTCGAGCTGGGTACAGAGGAGGCGGCCGTTACAATGGTGAACTACTATACGGCAGTGACGCCTCAGGTCCGCAACGTCCCAGTGTTCATCCAGTTCTCTAACCACAAGGAGCTCAAGACAGACAGTGCTCTCAACCAGCGTGCACAGGCTGTCCTCCAGGCAGTGTCGGCGGTTCAGGAGGGTGGCTCTCCCAACTCTGACACCAGTGCGCTGGATAGTGTTCTTGCGCAGGCCCCGAGCCCCGTGCTCAGGATAATCATTGACAACATGTTCTACCCCGTCACTCTGGACGTCCTCcagcagatcttctccaagtttGGAACAGTCATGAAGATCATCACGTTCACCAAGAACAATCAGTTCCAGGCCCTGCTTCAGTTCAGCGAACCAGTCAACGCCCAGCAAGCCAGGCTGTCCCTGGACGGCCAGAACATCTACAACTCATGCTGCACACTGCGGATCGACTTCTCCAAACTGGTCAACCTCAATGTCAAGTACAACAACGACAAGAGCCGCGACTACACCCGGCCCGAGCTGCCCGCTGGCGATGGCCAGCCCTCCCTAGACCCTGCCATGGCTGCCGCCCTCAACAAGGACTCCTCCCTGCTTGGTACCCCCTCAGGAATGGTAGCTCCCTACTCTAGCGGTGGAGGGTTTCAGTCTTCTCTTTCCTACTCGCAGGGCGGAGGAGCCATCAGTCCTCTGAGTGCTGCGGCCGCAGCGGCGGCTGCTGCGGGGAGGGTGGCGCTCTCCGGACACTCTGGCTGCAGCGGCGTGCTCCTGGTCAGCAACCTCAACGAAGAGATGGTTACGCCCCAAAGTCTGTTTACCCTCTTCGGGGTGTACGGTGATGCTCAGCGCGTGAAGATCCTCTACAATAAGAAGGACAGTGCTCTCATCCAGATGTCGGACGGGAACCAGGCCCAGCTCGCAATGAGCCACCTGAACGGCCAGAAGATGTACGGGAAGATAATCCGTGTGACGCTCTCCAAGCACCAGACTGTGCAGCTGCCCAGGGAAGGGCTGGATGACCAGGGCCTAACCAAGGACTTCACCAACTCCCCCCTGCACCGCTTCAAAAAGCCAGGCTCCAAGAACTTTCAGAACATCTTCCCTCCGTCCGCCACGCTCCACCTCTCCAATGTCCCGGAGGACGTGACTGAGGAGGATCTGAGACAGCTGTTCTCTAACGCAGGTGGCACTGTGAAGGCATTCAAGTTTTTCCAAGGCCACAAAATGGCGCTACTCCAGATGTCTACAGTCGAGGAGGCCATCCAGGCCTTGATGGACCTCCACAACTACGACATGGGCAGCAACCACCACCTGAAGGTCTCCTTCTCCAAGTCAACCATCTAGATGAACCACGCCATCACAACCCACCCCAACCCCTTCTCTGACAAATCTCAATGTGTGGTGCTCACCTGTTCAGTCCCCTCGGGGAGACCACAATGATACTCACCTCCTAGGGAAAACATTTGAACCAGTCATTCCTTTTTAGACAATATTGATTATCAAAAGCCCCCCACTCTAGATGTGACTGTAGTTTCTACGATGTCATTGTCGTAAAGCATCACCTGTCTAGGTCCCCTTATCCCTCTCCGCCTTAGTTTGTGTGGTTGGCAAGCTCCCTCCCTATGTTCTTCACGAGAATGAATTGGATTCCCTCTTTTTCTTAGAATGAATCAGCGAAAATGTGCCTTACTCAGCAAAATATTCTCATCGTTTTGCCTCCTTAAGTTTCTAAAAGTGATAGAGGTCTAGGCACATTCTGTTTGGTTGTGGTTTCTGTTTTGTTTTCCCCTCCCCTTTTACGTTACTTGATGTTCACCCATTTGAAATGTAGATTTAATAGTTTTGCTTTTGCGCTTTGTTGATGATTAACCTGATTTAGCGGACTTAGATAAGGAAGCCCATCTCTATTCAGTTGGTTGGGTTGTTTAATCCCAAACAAGTCAAGGCAAGGCCATTTTGTCCGGGTTGAGAATGATTACTGTAAAGGCTGTTGACGCCATTGTACACTTCACCTGCTAAGGATGACTGCTTAGATGTTCCCTTACTGACTGTAAATGCTGTCTAAATGTTTTTCAAACCTTACTTGCGTATGTCAATGTTCCCCTTTTttggtcatttttttttttttttttctttctttgatTGAAAATGGCAGTGAATCTTTTTGAGCATGTACTAATGGGTCATGGTAGTAGTGAAGAAATGTTGCTGTTGCATGCGTCCTACATCCAGATGGGCAATGTGTTCACTGGTCAAAGTGAAGTATGATTTTACATGAGGACGGACTACCTGTTGGGACCAAAGTAAATGTGCCTATAGTCCTACTTTACAATTTAATTTAAAAGAAACTTATTTTACAAAAACAAATGTGGATTATGTGTTTGAGAGGGGGAACAATACAAATCAAAGTCGAACCCTCGCAGAATGTTTCTCCTTGATTTCAATAATCTTCTGTGGTGTTTTTTGGTCAAGAATTACCCTTAAACTACACAGCTTCAGTTGAAGCAACAACGACAACAAAAAGATTGGAATGTGTGGGGAAAAGTTATCAATATTTTCTACATGGATTGAGTTTTTACATCTTAATTGTAATTATCAATATAGTTTGGAAAAGGCACGATTAAAAGCTCATTTTCTACCGAGTGAGTCCATGTTTGATGGTTCCTGCTGTGTGTACCTACTCTGATTTACATCTGTAGCATGCTCAATAAACTTTCCTGTAGCTCTATTCACCCTC

Function

NR:

description
PREDICTED: polypyrimidine tract-binding protein 2-like

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0005634 nucleus cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K14948 PTBP2, NPTB; polypyrimidine tract-binding protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021613049.2 True 3125 mRNA 0.48 14 56275091 56294377

Neighbor

gene id symbol gene type direction distance location
LOC110530179 LOC106568900 coding downstream 378749 55872953 ~ 55896342 (-)
LOC110530178 LOC106568902 coding downstream 435750 55815384 ~ 55839341 (-)
LOC110530176 LOC106568901 coding downstream 460163 55799908 ~ 55814928 (-)
LOC110530175 LOC106569017 coding downstream 500918 55769426 ~ 55774173 (-)
LOC110530174 LOC106568905 coding downstream 511038 55730434 ~ 55764053 (-)
LOC110530186 tm56b coding upstream 80211 56374588 ~ 56386555 (-)
LOC110530191 LOC106568892 coding upstream 175764 56470141 ~ 56486904 (-)
LOC110530189 LOC106568891 coding upstream 210918 56505295 ~ 56522597 (-)
LOC110530192 LOC106568888 coding upstream 228516 56522893 ~ 56526802 (-)
LOC118965616 NA coding upstream 245419 56539796 ~ 56541485 (-)
G725038 NA non-coding downstream 2095 56272294 ~ 56272996 (-)
G725000 NA non-coding downstream 22652 56249107 ~ 56252439 (-)
G724929 NA non-coding downstream 29289 56190777 ~ 56245802 (-)
G725005 NA non-coding downstream 62243 56211973 ~ 56212848 (-)
G724930 NA non-coding downstream 74341 56109205 ~ 56200750 (-)
G725062 NA non-coding upstream 34285 56328662 ~ 56328919 (-)
G725065 NA non-coding upstream 35935 56330312 ~ 56330584 (-)
G725068 NA non-coding upstream 43349 56337726 ~ 56366731 (-)
G725090 NA non-coding upstream 74662 56369039 ~ 56369248 (-)
G725007 LOC106568897 other downstream 42152 56219516 ~ 56232939 (-)
G724943 LOC106604981 other downstream 146803 56120203 ~ 56128288 (-)
G724400 NA other downstream 483606 55785517 ~ 55791485 (-)
G724287 LOC106568908 other downstream 629077 55635538 ~ 55646014 (-)
G723966 NA other downstream 878206 55396624 ~ 55396885 (-)
G725280 LOC106568997 other upstream 293966 56588343 ~ 56589271 (-)
penka LOC106569009 other upstream 535264 56828799 ~ 56840147 (-)
G726496 NA other upstream 841764 57136141 ~ 57137113 (-)
chd7 LOC106599585 other upstream 992139 57224058 ~ 57305576 (-)

Expression


Co-expression Network