LOC110530192 (LOC106568888)


Basic Information

Item Value
gene id LOC110530192
gene name LOC106568888
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 56522893 ~ 56526802 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036985746.1
TGAAATAAGGACATTTGTTCCGAGTAGACGGGGATTGGTCGGACAGACTGGGGGAACCTGTGCATGTTTCGGGGAGCAGGGTGGTCAGATCTTTCATTTGATATTGTTTTGCTAAATCCAAATAATTAGCAAACTACAACATGCTAGTGTCGGTGCTATTGATGATTGCACTAGCCAGTGCTGAACCATCGGTGTATTTTCGAGAGCAGTTTGAAGACGATGCTTGGAATACCCGTTGGGTTGAATCCACCCATAGGTCGGACTATGGGAAATTTGTCCTGACTGCTGGGAAATTTTATGGAGACGCAGAGAAAGACAAAGGTCTCCAGACCAGCCAGGATGCCCACTTCTACTCTTCTTCTGCTCGCTTTGAGCCCTTCAGCAACCAGGGCAAGACCCTGGTGATCCAGTTCACTGTCAAGCACGAGCAGAACATTGACTGCGGGGGAGGCTACATCAAGCTATTCCCCGCTGACCTCGACCAGGCAGACATGCATGGAGACTCTAACTACAACATcatgttcgGTCCAGACATCTGTGGCCCAGCCACGAAGAAAGTTCATGTCATTGTCAACTACAAGGGCAAGAATCACCTCATCAGAAAGGATATCAGATGCAAGGATGATGAGTACACCCATTTGTACACTCTGATCCTGAACCCTGACAACATGTATGAGGTGAAGATTGACAACAAGAAGGTGGAGTCTGGAAGTCTGGAGGAGGACTGGGACATTCTGCCCCCTAAAAAGATCAAGGACCCCGAGGCTGTGAAACCAGACGActgggatgagagggagaggatggaggaccCAGATGATAAGAAACCAGAGGACTGGGATAGGCCCGAGAACATTGCTGACCCTGACGCTAAGCAGCCGGAGGATTGGGATGATGAGATGGACGGTGAATGGGAGCCACCCATGGTCGCCAACCCTGACTATAAGGGTGAATGGAAACCCCGCAGGATCGATAACCCTGACTACAAGGGCAAATGGTTGCATCCTGAGATTGACAATCCAGACTACAGTGCAGACTCTGAGATCTACAGATTTGACAGCATAGGAGTCATTGGCCTGGATCTGTGGCAGGTGAAATCTGGGACCATCTTCGATAACTTCCTGATCACAGATGATGCTACGCTGGCAGAAGAAGTCGGCAATGAGACCTGGGGTCAGACTAAGGATCCAGAGAAAAAGATGAAGGAGTcccaggaggagaaggagaggaagaaactGGAGGCAGAAGAGATGGCGAGGAAAGAGGAGACAAAAGATGAgcctggagaagaggaggaggaagaagaggagactggAGCACAGGACGAAGAGGAGGCAACAGATTCTATAAAGGATGAACTTTAGAGGACTTTGACTTTCTCATAGGGGTGACTTCGTTCTTTGAGCCTGGGGAGAGATTATTCATCATTTCACTTTACCAGCCAGTCAGTCCTCAAAGTAATAATGTTGAGAGAAGGggaggtgaaggagtcatttacTGCAAAATCTGTGCCATTtttttaatttcatttttttaatattAATTTATTGGATTTTAACTTGCTAGTTTATCCCCTAATGAATAAAAAACGGACACTTTTTGTTATTCTATCAAATAATAATTCAGATTTGGTAATCTACTGGCAAATGTTTTTACTGTGATTTTTCTTACAGGCTCGACTTAATATAACCTATTTCTTGTAAGTATGCTTTTATAGTCTGTTGTTCCACCAAATATTACAGATGAAGTCTAATTCAATGGTGCTTGTTTGTTTTGTATACTTAATTCACATTGGGTGGTTGTGTACACAATGTGAATTCTACTTGTTATTCACATGCATAGCGATAGTTTCCCATTTGTTCCATTTCCATTTGCTTTCTAAATTCAGTCACACACTGGAATACATAATATTAGGTAGAATTTAGAAGTAGCATCTGTAACCTCACCTAGACAAATGCAGTCATCAACCTCTTAAATTCCACTGGCATTCAGCCAAGGACTACTGTAGCCAAATCATAAAATTTTTGTCTCTCAAACACTAACCTCATACTTCCAAATGTAGCATAGTGCATTTGTTCTCCCCTTAATTGTTTTTGTAGATATTTGTTACCTTATTTGGGAAATTATGATTACAGAGATTGTTGTGCAaaaatactgtacagtaataAAAAAAGAGAGCTGTTTGGATTTGA

Function

NR:

description
calreticulin-like isoform X1

GO:

id name namespace
GO:0006457 protein folding biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
K08057 CALR; calreticulin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036985746.1 True 2189 mRNA 0.43 9 56522893 56526802

Neighbor

gene id symbol gene type direction distance location
LOC110530189 LOC106568891 coding downstream 296 56505295 ~ 56522597 (-)
LOC110530191 LOC106568892 coding downstream 35989 56470141 ~ 56486904 (-)
LOC110530186 tm56b coding downstream 136338 56374588 ~ 56386555 (-)
LOC110530183 LOC106568896 coding downstream 228516 56275091 ~ 56294377 (-)
LOC110530179 LOC106568900 coding downstream 626551 55872953 ~ 55896342 (-)
LOC118965616 NA coding upstream 12994 56539796 ~ 56541485 (-)
LOC110530193 NA coding upstream 18142 56544944 ~ 56550688 (-)
LOC118965677 NA coding upstream 21177 56547979 ~ 56548051 (-)
LOC118965679 NA coding upstream 21956 56548758 ~ 56548841 (-)
LOC118965658 NA coding upstream 22209 56549011 ~ 56549087 (-)
G725238 LOC106568889 non-coding downstream 22418 56499392 ~ 56500475 (-)
G725237 LOC106568889 non-coding downstream 23657 56498572 ~ 56499236 (-)
G725236 NA non-coding downstream 24745 56497912 ~ 56498148 (-)
G725233 LOC105007163 non-coding downstream 27691 56494934 ~ 56495202 (-)
G725232 LOC106568889 non-coding downstream 29977 56492681 ~ 56492916 (-)
G725245 NA non-coding upstream 788 56527590 ~ 56527810 (-)
G725254 NA non-coding upstream 5660 56532462 ~ 56532665 (-)
G725257 NA non-coding upstream 8747 56535549 ~ 56535753 (-)
G725260 NA non-coding upstream 10380 56537182 ~ 56537402 (-)
G725007 LOC106568897 other downstream 289954 56219516 ~ 56232939 (-)
G724943 LOC106604981 other downstream 394605 56120203 ~ 56128288 (-)
G724400 NA other downstream 731408 55785517 ~ 55791485 (-)
G724287 LOC106568908 other downstream 876879 55635538 ~ 55646014 (-)
G725280 LOC106568997 other upstream 61541 56588343 ~ 56589271 (-)
penka LOC106569009 other upstream 302839 56828799 ~ 56840147 (-)
G726496 NA other upstream 609339 57136141 ~ 57137113 (-)
chd7 LOC106599585 other upstream 759714 57224058 ~ 57305576 (-)
G726885 NA other upstream 1278586 57805388 ~ 57811422 (-)

Expression


Co-expression Network