LOC118965616


Basic Information

Item Value
gene id LOC118965616
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 56539796 ~ 56541485 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036986847.1
ctgggggggaatgtccctagccctcaccctccgatccaacaggccccagatgtgctcaatgggattgagatccgggctcttcgctggccatggcgaGGGCCAGCCGGGCCCCAGTCAACCTCCAGCCCCTCCAAGAAGTGGCGAGGGCCAGCCGGGAACCAGTGGACCTCCAGTGCCCCTCAGACATGGTGAGGAACGGTTTGGCCTCAGCGGACCTCTGGGGCCCCCCAGACCCCATGTTGCATCCTCACCTGATCAGCCGACCTTTGTGGTTTCTTCTGGGTATCCTGCCTTGGAGACATTTCTGAGTCTGCCTGTCTTGCCTGGACCCCCCGGGTCCCCAGGTCCTGCAGTTGCTGTGTCAGTGCGACCCATAACAGACACTCTTACCCACGCCATGCTGGTGTTAGATGTGAGTCGTAAGAATGTGGTTGTTTGCTTTGTTTTCAATGGTGGGAATTTAGTCACAAAAATATGTTGAAATTAAGTGTCCAGTATATTGAAATGAAATGCGTCCATCTTATCTACCTGCTGTTTTTGTGAGACAGAAAGATGAATGAAAGTCAAATGAATAGTTTTGTTTGTGTTATGCCTGTGATAGTATTTAACTGCATGGCAGTACATTTGTGTTATAGATAACCCCAGACACCCTGGTGACATTGGACATCTCCCAACTTTAGGAACATTTCAAATAGAACAAATCTTCCTATTtgtattttgttattttggtGGTTAATATAGGGCAGACAGACATGTTCTCTACTTTCTCCCCTTTTCACTTGCCTCCTTTTTTTTGCAGTAATGCTGCATTCACTTGGTTGCGTGTATGTATACATCCTATTCAGAATATtgttcatatttaaaaaaaatgtcattaCTTGAAGGGCTGTGAAAACAATGAAAATGTCATAATATATTTAGGGATGCAAAACCCAGATTCGAATCATGTGTTGATCTATTGCCATGGACGTAGCATCTTCCTTTCCCAATCCATTGGAAAATGACTTTAAACTGCATGTTTCTCATTTGATGATTTAGGACAGGGTTCCTCAACTGACTGTGGTTTTATTTTACACCTCAAGTTTTCTGAGCATCaaaattatatacagtgccttgcgaaaatattcggcccccttgaactttgcgaccttttgccaca
>XM_036986848.1
ctgggggggaatgtccctagccctcaccctccgatccaacaggccccagatgtgctcaatgggattgagatccgggctcttcgctggccatggcgaGGGCCAGCCGGGCCCCAGTCAACCTCCAGCCCCTCCAAGAAGTGGCGAGGGCCAGCCGGGAACCAGTGGACCTCCAGTGCCCCTCAGACATGGTGAGGAACGGTTTGGCCTCAGCGGACCTCTGGGGCCCCCCAGACCCCATGTTGCATCCTCACCTGATCAGCCGACCTTTGTGGTTTCTTCTGGGTATCCTGCCTTGGAGACATTTCTGAGTCTGCCTGTCTTGCCTGGACCCCCCGGGTCCCCAGGTCCTGCAGTTGCTGTGTCAGTGCGACCCATAACAGACACTCTTACCCACGCCATGCTGGTGTTAGATATAACCCCAGACACCCTGGTGACATTGGACATCTCCCAACTTTAGGAACATTTCAAATAGAACAAATCTTCCTATTtgtattttgttattttggtGGTTAATATAGGGCAGACAGACATGTTCTCTACTTTCTCCCCTTTTCACTTGCCTCCTTTTTTTTGCAGTAATGCTGCATTCACTTGGTTGCGTGTATGTATACATCCTATTCAGAATATtgttcatatttaaaaaaaatgtcattaCTTGAAGGGCTGTGAAAACAATGAAAATGTCATAATATATTTAGGGATGCAAAACCCAGATTCGAATCATGTGTTGATCTATTGCCATGGACGTAGCATCTTCCTTTCCCAATCCATTGGAAAATGACTTTAAACTGCATGTTTCTCATTTGATGATTTAGGACAGGGTTCCTCAACTGACTGTGGTTTTATTTTACACCTCAAGTTTTCTGAGCATCaaaattatatacagtgccttgcgaaaatattcggcccccttgaactttgcgaccttttgccaca
>TU823928
ccatggcgaGGGCCAGCCGGGCCCCAGTCAACCTCCAGCCCCTCCAAGAAGTGGCGAGGGCCAGCCGGGAACCAGTGGACCTCCAGTGCCCCTCAGACATGGTGAGGAACGGTTTGGCCTCAGCGGACCTCTGGGGCCCCCCAGACCCCATGTTGCATCCTCACCTGATCAGCCGACCTTTGTGGTTTCTTCTGGGTATCCTGCCTTGGAGACATTTCTGAGTCTGCCTGTCTTGCCTGGACCCCCCGGGTCCCCAGGTCCTGCAGTTGCTGTGTCAGTGCGACCCATAACAGACACTCTTACCCACGCCATGCTGGTGTTAGATGTGAGTCGTAAGAATGTGGTTGTTTGCTTTGTTTTCAATGGTGGGAATTTAGTCACAAAAATATGTTGAAATTAAGTGTCCAGTATATTGAAATGAAATGCGTCCATCTTATCTACCTGCTGTTTTTGTGAGACAGAAAGATGAATGAAAGTCAAATGAATAGTTTTGTTTGTGTTATGCCTGTGATAGTATTTAACTGCATGGCAGTACATTTGTGTTATAGATAACCCCAGACACCCTGGTGACATTGGACATCTCCCAACTTTAGGAACATTTCAAATAGAACAAATCTTCCTATTtgtattttgttattttggtGGTTAATATAGGGCAGACAGACATGTTCTCTACTTTCTCCCCTTTTCACTTGCCTCCTTTTTTTTGCAGTAATGCTGCATTCACTTGGTTGCGTGTATGTATACATCCTATTCAGAATATtgttcatatttaaaaaaaatgtcattaCTTGAAGGGCTGTGAAAACAATGAAAATGTCATAATATATTTAGGGATGCAAAACCCAGATTCGAATCATGTGTTGATCTATTGCCATGGACGTAGCATCTTCCTTTCCCAATCCATTGGAAAATGACTTTAAACTGCATGTTTCTCATTTGATGATTTAGGACAGGGTTCCTCAACTGACTGTGGTTTTATTTTACACCTCAAGTTTTCTGAGCATCaaaattatatacagtgccttgcgaaaa

Function

NR:

description
PREDICTED: collagen alpha-1(XVI) chain-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036986847.1 False 1159 mRNA 0.45 3 56539796 56541485
XM_036986848.1 False 936 mRNA 0.48 4 56539796 56541485
TU823928 True 1035 lncRNA 0.44 3 56539833 56541398

Neighbor

gene id symbol gene type direction distance location
LOC110530192 LOC106568888 coding downstream 12994 56522893 ~ 56526802 (-)
LOC110530189 LOC106568891 coding downstream 17199 56505295 ~ 56522597 (-)
LOC110530191 LOC106568892 coding downstream 52892 56470141 ~ 56486904 (-)
LOC110530186 tm56b coding downstream 153241 56374588 ~ 56386555 (-)
LOC110530183 LOC106568896 coding downstream 245419 56275091 ~ 56294377 (-)
LOC110530193 NA coding upstream 3459 56544944 ~ 56550688 (-)
LOC118965677 NA coding upstream 6494 56547979 ~ 56548051 (-)
LOC118965679 NA coding upstream 7273 56548758 ~ 56548841 (-)
LOC118965658 NA coding upstream 7526 56549011 ~ 56549087 (-)
LOC118965684 NA coding upstream 7778 56549263 ~ 56549332 (-)
G725260 NA non-coding downstream 2394 56537182 ~ 56537402 (-)
G725257 NA non-coding downstream 4043 56535549 ~ 56535753 (-)
G725254 NA non-coding downstream 7131 56532462 ~ 56532665 (-)
G725245 NA non-coding downstream 11986 56527590 ~ 56527810 (-)
G725238 LOC106568889 non-coding downstream 39321 56499392 ~ 56500475 (-)
G725267 NA non-coding upstream 12095 56553580 ~ 56553862 (-)
G725268 NA non-coding upstream 12861 56554346 ~ 56555276 (-)
LOC118965627 NA non-coding upstream 35372 56576857 ~ 56579645 (-)
lrrc53 LOC106568997 non-coding upstream 42261 56583026 ~ 56588553 (-)
G725007 LOC106568897 other downstream 306857 56219516 ~ 56232939 (-)
G724943 LOC106604981 other downstream 411508 56120203 ~ 56128288 (-)
G724400 NA other downstream 748311 55785517 ~ 55791485 (-)
G724287 LOC106568908 other downstream 893782 55635538 ~ 55646014 (-)
G725280 LOC106568997 other upstream 46858 56588343 ~ 56589271 (-)
penka LOC106569009 other upstream 288156 56828799 ~ 56840147 (-)
G726496 NA other upstream 594656 57136141 ~ 57137113 (-)
chd7 LOC106599585 other upstream 745031 57224058 ~ 57305576 (-)
G726885 NA other upstream 1263903 57805388 ~ 57811422 (-)

Expression


Co-expression Network