LOC110530193


Basic Information

Item Value
gene id LOC110530193
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 56544944 ~ 56550688 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005052919.1
CCTTCATAAAATCCTCTTCCGCGCTTAACTCAACAGTGAATGGTGTACAGGTCATACTGTACGGGCCACAAAATGATGAAGTACAACCTAACGTTACTTGATCCTGATGAATGACTCAGCGAAAATGGTTTACGATCAGATTATGAGGATCAATCTGCTCGATCCTGGATGACAATGGTGTACGATCAGGTTAAAACCACCTTTAAGCCGACCTTGTTAGGGAAACCAGGATATCCCAAACTCCTGTTGTGCCTCAAGTTGTTGGATGGTTGGAACCTCTAGTCGGACTCATCAATACAGTTGCCTACATGGAAATTTGGCTGATCTTGCTGTTTTGGGGTTACATTGCAAAATGAACCACAGGCCAAGGTTCCTGGAGGCTGTCAGACCAGTTGCGTTTGTAATGAATGTCCTTGACGCCTCAAACTGAGCAGGGTTTGGTCATGAAAGTGCAAATACAATTACCACTGACCTGCAATGTTCACTATTTTGGTGTGCTGTCAAAATATACTTAAACTGTAAATGTAGTGTGAACTATAGATTGGTCAATAAAGAATACTCCAAGCATTGGTTTCACTTGATGTTGTCCATAACAATAATGttatatgtaaagtgttggtcccagagaatgtaatgttaatttggCAGTGCCCAGAAGACCTCACTGCGTGGATTGCTTATGTCAATTTTGAACAGTCACGTGGTGGTTGACGTACGTGCAGGCTATTTAAATGTGCAGAGACCGTGGTGAGTGAGGCCCATTGTCCTGGCACTCATCTGCAGCCATAGCCTCATTTCAACATAGTGCACAGTCGTAAGGATCTACACATAATTCACGTGacatggcctgcatattcaccagacatgttacTCCACGTGGGGTACTTGTTACCTTTTGAATAGTGATACAGAACCACATTGTACTGTGATACTCAACCCCCAGTCTTTCCCGGGAGTTTTGTCAGTCTTGAGGTTCGCGGGTAATTGTCCTTGAGGTTTTGTTCGGGTGTGTACCGTGTAAAGTTATTATACAACTTCATTACTGCGTTGGCAAGTATAGTTATAAAAGCATGCCGTAACTTGGCGTTGTTTAGACCCTGATTTTCATAGTCTCCGAGATGGCTAGTGAGGATTcggtgttatgcactatagcccgttactATGTGATTGCATGttctctgctgttggcttgtggcTGTATATGTTATGCAACACAGCTGACTAGACACATTGtcaacagtttcagggccatgggcctttctcatgatgtaAAAATACAGAACatgaactgtgcaatgagttgtgggggcacattcagaacgtaGTGTTGCGAGAACAAACGGTCTTATGTTAACAGGAGCCAAGTGTGTAACTGTATTGAGCATGGGCGCATAGATATTCTACacaacgactgaccgctgaagcgccTAGGGGGCTGGGACCAGCTCGGGCGCCAACGATAGGCTGAgtgagtttaaaccacgcccagtctcatAACTGTCAGGAACAAATCAGTTCTATTTGCTCTGCGAGGTGTGACAGCGAGCctgtatatacgaaaattgcatgtACCctttattgcttagctaataacaagtacatagtatacaatcggtgactcattttcatatttatcctgataccagattcgattgATGCAACCCTTAACACTAGTACCAccaaaatgttagctagctatcctcATCACCTAGCTACCTATAATTTCTTTGTTCCCACTCAATGATGGCGTCTCCCATCAACCAAGGTTCCGTGGCCTGAACATGGCTGTTAGAccactgttcataggccgtcattggaaataaccatttgttcttaactgacttgcctagttaaaagtaAACATAAGGTATGTTCAATTCCCTTCAATGTTTGTCTCAAGAATAAACAAGTGAAATAATTAGTCAGATTAGCTAGCTACTTGTCTTTAGGCTTTTAAAGGGGGAATCAGCAGTTGATACATCTTTGGatttaatgatatgtacccattgattcttgaagataTTACTTATAAATGCCCTATGAGCTTAGTTTGTCATACCCCACCAGAACCCCAAATAAAAGCtagttttactccaatgttttttaacaaagtaaatgtaaccACTGTAGCCTCAAGCTATATCAAGGaaggtcagtccttgcatctatagctctggctatgaatttgagtggtaaCATTTCTCCAGCCCAGTCCCAAGAAGACGGAAGATGctttattgtttctactgctgattgctgctttaaGTGCTTTTCATTTGCTTCATATTGTAACCTGCAGTAGGCTCTATGTGAATGCGGTATAATGAAAAGACTGGCTCCTACAATAACCAAGGGCTTTTGGTCTTGCTGGCAATGGCTAATTACCTTTCAGTTTGACCAAAAGGCCTGAAGTCTCTTGTTCATAGACAAGGAAACACTTACATACCCCCATGTTATACTTTAAAATGTAATATATTAATTTTGTAGTAAGAAACATAACGGCTAACAGGGGCACCCTTGTGTTTTATCATGAACGGGGTATGAAAGGAGGGCCTCGTCCCTGGTGACGGAGGCTGCTGCAGCTACAGGACTACCCTTGTCTGTTAAGAACCGGATTGGTAAC
>TU823912
GCTTAACTCAACAGTGAATGGTGTACAGGTCATACTGTACGGGCCACAAAATGATGAAGTACAACCTAACGTTACTTGATCCTGATGAATGACTCAGCGAAAATGGTTTACGATCAGATTATGAGGATCAATCTGCTCGATCCTGGATGACAATGGTGTACGATCAGGTTAAAACCACCTTTAAGCCGACCTTGTTAGGGAAACCAGGATATCCCAAACTCCTGTTGTGCCTCAAGTTGTTGGATGGTTGGAACCTCTAGTCGGACTCATCAATACAGTTGCCTACATGGAAATTTGGCTGATCTTGCTGTTTTGGGGTTACATTGCAAAATGAACCACAGGCCAAGGTTCCTGGAGGCTGTCAGACCAGTTGCGTTTGTAATGAATGTCCTTGACGCCTCAAACTGAGCAGGGTTTGGTCATGAAAGTGCAAATACAATTACCACTGACCTGCAATGTTCACTATTTTGGTGTGCTGTCAAAATATACTTAAACTGTAAATGTAGTGTGAACTATAGATTGGTCAATAAAGAATACTCCAAGC
>TU823913
GCTTAACTCAACAGTGAATGGTGTACAGGTCATACTGTACGGGCCACAAAATGATGAAGTACAACCTAACGTTACTTGATCCTGATGAATGACTCAGCGAAAATGGTTTACGATCAGATTATGAGGATCAATCTGCTCGATCCTGGATGACAATGGTGTACGATCAGGTTAAAACCACCTTTAAGCCGACCTTGTTAGGGAAACCAGGATATCCCAAACTCCTGTTGTGCCTCAAGTTGTTGGATGGTTGGAACCTCTAGTCGGACTCATCAATACAGTTGCCTACATGGAAATTTGGCTGATCTTGCTGTTTTGGGGTTACATTGCAAAATGAACCACAGGCCAAGGTTCCTGGAGGCTGTCAGACCAGTTGCGTTTGTAATGAATGTCCTTGACGCCTCAAACTGAGCAGGTATGTTTCATGTATACAGAGGATGTGGTTTAAGTCTGTCACTGCCATTGTTTCAGTGACCTGGTCCATGTTTTTATGTGGGGGTGAGCAAATGATGATTCAGTTCTTGAACTCTCTCCCTGAGATCTTGATGACTACAAGAATACTGATCTTGCCCCATTGACATCCTAATGGTTGACTGTAACTTCATTTGGTTAACTTGTCTTCCTCTTCCCACAGGGTTTGGTCATGAAAGTGCAAATACAATTACCACTGACCTGCAATGTTCACTATTTTGGTGTGCTGTCAAAATATACTTAAACTGTAAATGTAGTGTGAACTATAGATTGGTCAATAAAGAATACTCCAAGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005052919.1 False 2623 mRNA 0.42 9 56544944 56550688
TU823912 False 544 lncRNA 0.42 8 56547496 56550666
TU823913 True 763 lncRNA 0.42 7 56547496 56550666

Neighbor

gene id symbol gene type direction distance location
LOC118965616 NA coding downstream 3459 56539796 ~ 56541485 (-)
LOC110530192 LOC106568888 coding downstream 18142 56522893 ~ 56526802 (-)
LOC110530189 LOC106568891 coding downstream 22347 56505295 ~ 56522597 (-)
LOC110530191 LOC106568892 coding downstream 58040 56470141 ~ 56486904 (-)
LOC110530186 tm56b coding downstream 158389 56374588 ~ 56386555 (-)
LOC118965627 NA coding upstream 26274 56576857 ~ 56579645 (-)
lrrc53 LOC106568997 coding upstream 32338 56583026 ~ 56588553 (-)
LOC110530944 NA coding upstream 38096 56588784 ~ 56601317 (-)
LOC110530945 LOC106568882 coding upstream 119219 56669907 ~ 56763302 (-)
LOC110530198 LOC106568881 coding upstream 232590 56783278 ~ 56793172 (-)
G725260 NA non-coding downstream 7542 56537182 ~ 56537402 (-)
G725257 NA non-coding downstream 9191 56535549 ~ 56535753 (-)
G725254 NA non-coding downstream 12279 56532462 ~ 56532665 (-)
G725245 NA non-coding downstream 17134 56527590 ~ 56527810 (-)
G725267 NA non-coding upstream 2892 56553580 ~ 56553862 (-)
G725268 NA non-coding upstream 3658 56554346 ~ 56555276 (-)
G725282 NA non-coding upstream 40415 56591103 ~ 56591352 (-)
G725007 LOC106568897 other downstream 312005 56219516 ~ 56232939 (-)
G724943 LOC106604981 other downstream 416656 56120203 ~ 56128288 (-)
G724400 NA other downstream 753459 55785517 ~ 55791485 (-)
G724287 LOC106568908 other downstream 898930 55635538 ~ 55646014 (-)
G725280 LOC106568997 other upstream 37655 56588343 ~ 56589271 (-)
penka LOC106569009 other upstream 278953 56828799 ~ 56840147 (-)
G726496 NA other upstream 585453 57136141 ~ 57137113 (-)
chd7 LOC106599585 other upstream 735828 57224058 ~ 57305576 (-)
G726885 NA other upstream 1254700 57805388 ~ 57811422 (-)

Expression


Co-expression Network