LOC118965627


Basic Information

Item Value
gene id LOC118965627
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 56576857 ~ 56579645 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC118965627
ATGCAGCCCCTCCTGGATGCAGTGCTCCAGTCAAAGAAAGGCATAAAGCTGAACTTCAAAAGCATTCAGGCGGCGACTCCCTCCCTAGACTTCCTGAGCATGACAAACCAGACTAAAGGGATGAATCGACCAGTGTGGCTGAATACTGACATCCTCCCTGGGTCCAACGTCGCGGCCTTCTGACCTGTCATTAACGGATGTGAGTGAGTAGCCAGGAAAGAGCAATCCTATTCGCCAGATGTACGCCATCATCGAAAATGCCCCACAGAAAGTCACCTTTCCCCTCCACGCTGTAATGGCCAGAAATGGACGGCCTCTCAACAGCTGGCTGCTCAGTCAATCGCCAAGGAGCTTGAAACGTTTCTCGCAAAAAAACAATAGTGTGAACGACCTGCTGTTCGTCAGGGACAAACCCAACCTTGAACGGGTCTACTACCTGTCCCAGTTCAAAGAAGCTGCCAAGAGCAGAGATCGGCCGAAAAAGTTATACCCTGGAGGAGACCTGATTTGACTAATTTCAGCCAAAATATTGA
>TU823949
CAAACCCAACCTTGAACGGGTCTACTACCTGTCCCAGTTCAAAGAAGCTGCCAGTAAGAAAACCTGTGGAACTCCTAAATCCGTTGTATGAGAGCAGAGATCGGCCGAAAAAGTTATACCCTGGAGGAGACCTGATTTGACTAATTTCAGCCAAAATATTGAGATTGCCACTACATCCAGTGGAACAGTCACAGACCGAGCCTCACTGCTGTCAGGTAGATCTGGAGGGATTATGATGGGGTGCAACCTAAATGCCACCCATTGACA
>TU823951
TCATAGAACAGAGAAAGAATGTCTGAAGAAGTGAACGATGCATGGAGGAAGAAACCATTTGAAGAAGGAAAGAAGAggaccagaggaccagaggagaTATATCCGATGCTTTACTAAAGAATAGTAGATCATGCTGTGTCAGTGTAGGTCTCCTTGTACTGCTTCtgaccaccaccatcacctctgCCGTTGACTCAAAATGCAGGTAACTCAAACTTCTTATTTTGTTTCCCTTTTTCAAGACAAATTCACCAGCATACAGTAATCATATATA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC118965627 False 533 mRNA 0.40 5 56576962 56579446
TU823949 False 267 lncRNA 0.47 2 56576857 56577321
TU823951 True 274 lncRNA 0.40 1 56579372 56579645

Neighbor

gene id symbol gene type direction distance location
LOC110530193 NA coding downstream 26274 56544944 ~ 56550688 (-)
LOC118965678 NA coding downstream 27383 56549500 ~ 56549579 (-)
LOC118965684 NA coding downstream 27630 56549263 ~ 56549332 (-)
LOC118965658 NA coding downstream 27875 56549011 ~ 56549087 (-)
LOC118965679 NA coding downstream 28121 56548758 ~ 56548841 (-)
lrrc53 LOC106568997 coding upstream 3580 56583026 ~ 56588553 (-)
LOC110530944 NA coding upstream 9338 56588784 ~ 56601317 (-)
LOC110530945 LOC106568882 coding upstream 90461 56669907 ~ 56763302 (-)
LOC110530198 LOC106568881 coding upstream 203832 56783278 ~ 56793172 (-)
LOC110530946 LOC106568881 coding upstream 235280 56813859 ~ 56827689 (-)
G725268 NA non-coding downstream 21686 56554346 ~ 56555276 (-)
G725267 NA non-coding downstream 23100 56553580 ~ 56553862 (-)
LOC118965616 NA non-coding downstream 35564 56539796 ~ 56541485 (-)
G725260 NA non-coding downstream 39560 56537182 ~ 56537402 (-)
G725282 NA non-coding upstream 11657 56591103 ~ 56591352 (-)
G725284 NA non-coding upstream 13337 56592783 ~ 56593012 (-)
G725289 NA non-coding upstream 17805 56597251 ~ 56597872 (-)
G725299 NA non-coding upstream 25821 56605267 ~ 56605699 (-)
LOC110530186 tm56b other downstream 190446 56374588 ~ 56386555 (-)
G725007 LOC106568897 other downstream 344023 56219516 ~ 56232939 (-)
G724943 LOC106604981 other downstream 448674 56120203 ~ 56128288 (-)
G724400 NA other downstream 785477 55785517 ~ 55791485 (-)
G724287 LOC106568908 other downstream 930948 55635538 ~ 55646014 (-)
G725280 LOC106568997 other upstream 8897 56588343 ~ 56589271 (-)
penka LOC106569009 other upstream 250195 56828799 ~ 56840147 (-)
G726496 NA other upstream 556695 57136141 ~ 57137113 (-)
chd7 LOC106599585 other upstream 707070 57224058 ~ 57305576 (-)
G726885 NA other upstream 1225942 57805388 ~ 57811422 (-)

Expression


Co-expression Network