lrrc53 (LOC106568997)


Basic Information

Item Value
gene id lrrc53
gene name LOC106568997
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 56583026 ~ 56588553 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036985749.1
TGAGACCACCAGGGCCCTGATGCTGACCGATGGCGCCATCGTCTCTGTGGACCGCCACTTCCTTTCTGACATGTCCAACATGACCGTGCTGTCCCTGAGCCACAACGCTATCACCACCCTCACCCACGACGCCTTCCAAAATCTCACCATCCTCCACACCCTCCTCCTGGACCACAACCACCTCTCCAGCCAGACCCTGGACAGGGCCACCTTCTCCTGGCTGCCCAGGTTGGAGATCCTCCAGCTGGGGAACAATGCCCTGAGGGAAGTCAAAGGCTCCTGGTTCCACGCCGCCAGGGCCCTGCGGACACTGCAGCTGGGGGGGAACCTCCTCACCAGGCTGGACGCCACTACCTTTGCCTCGGCCGACCTCCGGGCGCTGGAGAACCTGGATCTGTCCGATAATCTGATAACATATCTGGGGAGGGATAGCTTCCGGGGCCTGCCGGGGCTCCGTAGTCTGGATCTGTCCAGGAATCAGCTCCGAAACGCCCTGCCTGAAGCATTTTCCTACCTGTCTTGGCTAACTAGTCTCAACCTGGAACTGAACAGGTGGAACTGTACGTGTGAGCTGAGGGAGCTGGCGTCTTTCCTCACCAGCTATATGGAGGCTCCGGATAAGGTGCTGTTCAACGGGCGTAGGATGGTCTGTGTGAGTGCTGACAACCCGGCAGTGAAGACGGTGCTGGAGCTGACGGAGGCCAACTGTGTTCCACCCAATCAGAACATCACAGTGCAGGTGGAGGCCAAGAACTCCGTCTCTCCTCAGCGCTACACCAGAGACCTGGCTCTGGCCGCTGCCTTCTGCTTCGCTGGTGGTGTTGGACTCACCCTAGCTGTGGTGTACATAATTTACCGCAAACTGGAGACGAACAAGAGAGACCGGACTGGAGctaaggaggaggagaataggaggACAGCACCCACCCAAACAGTCCCCCAGTGGGATCCGATCAGGGAGAACCAAGCCCTTCACCTGGCTCAAATGGGACTGGAAACCAAGCTGATGCTCCCCAATAGCAACCAGCAAGGCAGCCACCTTCAGCtctgggaaagggagagagccaTGTATGATCTGAGGATGGGTAAAGACGGCCGCCATTTTACACGCCCCCACTGTGGCCCTGCAGTCACTGGGTCTGCAGTGGAACAGGGGGGAGGAGACGAACACATGAACACCCTGGACATGCTCAGGCAGGGAGGAGCCCAGCCCAATAAGATGGGGAGTCTGGCCAtgacagatgagaggaggagacatgTGCCAACGCAAGCACTGATCTCGAAGATGGAAGATCTAAGAGGTCAAAGGTCATTCAACAGGCCACCAGAGGGTCATCAGGAGTTACTCGATCACCAACAGGGTTATAAAAAACATGGTCCTAATGGCAACAACCAGCCATTGGGTGGCAGCAACAGCTACTTTTCACCTGCTCAAAGAAACATGTCCACACATAAAGGTCTAAGAGATGAGATGGCAAGGCCTGGAAATTACATTGACAACAAACAGTCAAATTTACATTTCCAACCAGAGGGTGGCAGACCTGTGACTGACTATCAACCCCAAACTGCCAGCTGTGTGAACTGTCACAGAACCTATGagtacagacagccaggggataAAGCCAGGGATGTTTCATATGGACTCCATGCAAGAGAATCTGCTGGATATGAGGGATTCCCCAACCACAACCAACTGACAAGGCAACATATGGGAAAGAACATGAACTACAACCAGCCTAATGTGGACATCTATGCAAAGCATGCAAGTGAGCAGAGGAGTGTGACCTTTGACTTGGAAAGACCTCGAGTGCATGTCGTCGATGTACAAAAGATGAACCGTGATAGTGAAGGCAAACATGACAGGATTCAAAGTTCTAGGAAGGCGGAATATGGTGACACGCAGACACTGCGCTATGAAGGCAGTGGACGATCTGCGAGGAGTAATGCTCTTGAAAGAGAAGACAACTCTAAAAGGCATAAACATAAAGTCCAGTCAAGTGGTTTACTAAAAGTAAAGCTCAACCTTAACCCACTTAAGAAAAGCAAGGTCCATCCAAGGAAAAACAGCCACCAGAATCTAGAACAGGGCGACAGAGAACCAACCAACTCCAAGAACCGAAAACAACTGAAAACGGGGGGGAAAGATGTCAAAGGCAAAAGGCACCAACAGGATGAGTCTGAGTCTAAAGGAAAAACAGACAAATCCAGTAAAGGAAACTCGACTGCCAAAAACAAAGCCAATCAGACATCCAAAAATAAATCTACCGTTAGCAAGTCTAAAGAAATTGATGATAATTATGAAGATAATGAGTccgaagaggaggaagagaaagaagatcCAGTGCCACAGCAAAACAAGGCATCCTCCAAGCAAAAAAAGACAACCtcaaaatcaaaacaggaacaccAGGAAGGCTCAAATGACCATCCCAAGAGTAGAACTGCTCAAGATCAGAAGAAGGCCGACATCTCACAAAATAGAACTGGAGGAGTAACTGAGGAATCTGGTGAAGCACCTATACCAAGCAATTTGAGTCCTTACCAGTCAGACCCCAACAGAGCTGGTGGTAGTTCAGCCAATGGGCAGCAGGTGAAGCAATACAAAAATGGACAGGGCCAAGCACTCATCCCTGAGACACCCCAACACCCCCGTTGCCTAGGCGATGGAGTGGTTCTTCAGAGGGCATTGAGTAACCCACAACTGTCAGCAACACACCCCCTCACAGGAGTGGAAATGACTTCCAGTTACAGTAACCTTCCTGTGCAGGGAGGGAACTCTACACTATTACAAAACACTGTTGCTCCAAACCCTGCTTACGGTGGTAAATTACAGCCTCAAAGCTTGAGCAGACCAGGCAGTTTAGACAATTTACAGGCTCAAAGCCTGAGCAAACAAGGTCGTTTAAGTCCTCCACCTTTACTGACTAACATCCCACACACATTCCCACTATACACAGGCAATGTAGGGAGCTTGCCTGTAAATCCATTTATCCCGCTGTTGTCACAGCCAGTTTCAGGAAACTTTAACCAGGAGGCCATGATCGGCTCTCAGCCAACCCAGTTTCCAGCACTCCAAAGCGTGGAAGATCTCACTCTGCTTGCCCAGGGTCCTGGATCACTAATTGAAAAGAATATCTCTCCAATTGCCCAGGGTTCTGGCTCACTAAATGGGGAGAGTCTCTCCAACAACAGTATGAACGCAGCGACCGCCCGTTCCACAGGAGTACCTGTCCTCAGCAAAAGGCTCACCCAGAAGGATTAGACTGGTGCTGCCTGAGAAAACCACTAACAGACCGCCAACTGCTCTGGAGAGGGAAATCAGATAAGTGGATTTGAATTGTCCTATTGTGTTTCCTTGTGGGTTCAAAAATAAGGGATAGCTCAAAATGACCGCTTCATCTTAATGCTCAAGTGAACCTAGAACGATGCCCTCTATTACAGTGATAGAACTTCTCAACATACTCTACGTCATGTTATATTGAATGTCAtgtgaaaatgttatttgtcCACTGCTTATTATTCTGCCTAGTTGCTTGatcataaaatacaaatatatatatatatatatatatttttttttaaacatactgtacatgaaaTATTTACCGTATTTATTTGTCAGCCAATGCACTTACTCAACCCGTCATCCTATGTTTAACACCTGACTCAAGGTGTTATGAATGATTTAATGCTGAAGTTGTCAAGTGTGTGCATTGGTAGATAACTTGTATTTTTATCAATTCTGTTTTacacaaataaaacatttgaataaaCATGGAAATAAAAT
>TU823954
GAGCTTGCCTGTAAATCCATTTATCCCGCTGTTGTCACAGCCAGTTTCAGGAAACTTTAACCAGGAGGCCATGATCGGCTCTCAGCCAACCCAGTTTCCA

Function

NR:

description
PREDICTED: uncharacterized protein LOC107700485

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036985749.1 False 3787 mRNA 0.49 4 56583026 56588553
TU823954 True 100 lncRNA 0.50 1 56583746 56583845

Neighbor

gene id symbol gene type direction distance location
LOC118965627 NA coding downstream 3580 56576857 ~ 56579645 (-)
LOC110530193 NA coding downstream 32338 56544944 ~ 56550688 (-)
LOC118965678 NA coding downstream 33447 56549500 ~ 56549579 (-)
LOC118965684 NA coding downstream 33694 56549263 ~ 56549332 (-)
LOC118965658 NA coding downstream 33939 56549011 ~ 56549087 (-)
LOC110530944 NA coding upstream 231 56588784 ~ 56601317 (-)
LOC110530945 LOC106568882 coding upstream 81354 56669907 ~ 56763302 (-)
LOC110530198 LOC106568881 coding upstream 194725 56783278 ~ 56793172 (-)
LOC110530946 LOC106568881 coding upstream 226173 56813859 ~ 56827689 (-)
penka LOC106569009 coding upstream 240246 56828799 ~ 56840147 (-)
G725268 NA non-coding downstream 27750 56554346 ~ 56555276 (-)
G725267 NA non-coding downstream 29164 56553580 ~ 56553862 (-)
LOC118965616 NA non-coding downstream 41628 56539796 ~ 56541485 (-)
G725282 NA non-coding upstream 2550 56591103 ~ 56591352 (-)
G725284 NA non-coding upstream 4230 56592783 ~ 56593012 (-)
G725289 NA non-coding upstream 8698 56597251 ~ 56597872 (-)
G725299 NA non-coding upstream 16714 56605267 ~ 56605699 (-)
G725309 NA non-coding upstream 25399 56613952 ~ 56614394 (-)
LOC110530186 tm56b other downstream 196510 56374588 ~ 56386555 (-)
G725007 LOC106568897 other downstream 350087 56219516 ~ 56232939 (-)
G724943 LOC106604981 other downstream 454738 56120203 ~ 56128288 (-)
G724400 NA other downstream 791541 55785517 ~ 55791485 (-)
G724287 LOC106568908 other downstream 937012 55635538 ~ 55646014 (-)
G726496 NA other upstream 547588 57136141 ~ 57137113 (-)
chd7 LOC106599585 other upstream 697963 57224058 ~ 57305576 (-)
G726885 NA other upstream 1216835 57805388 ~ 57811422 (-)
G726900 NA other upstream 1231494 57820047 ~ 57846689 (-)
G725280 LOC106568997 other upstream 4498 56588343 ~ 56589271 (-)

Expression


Co-expression Network