LOC110530198 (LOC106568881)


Basic Information

Item Value
gene id LOC110530198
gene name LOC106568881
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 56783278 ~ 56793172 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021613077.2
ATCAATGGAACAGGACTAGCCTCCGTGATTTGCAGAAGGGATAAGTAGGAGGAACCATGCTGAAAGTGCAGATAAACCCAATTGAAGAGCTCATCACTCTAAATGAAGATCTAAGTAGAGAAAATCCTGTTTCACTGCgtgtcttttttgttgttgttgtttcgaTTACTGTGCACCTTGACACGGAGTGCAAAGGTCGgttaaagacccccccccccccagtgctgAAAGGAGGCGATAGTTGTTACAAAATATTCAAGGTTGAAGCTGATGTTCTATTGAGGGGCCAGCAAAATGAATTTCCTCCTGGAAACCCTTCAGTTGATTTTAATGTCCATTTATTACAACATAGAGGCATTTGTCAGACTGTTCATCCCATTTAAGAAGAAAAATGTCACCGGGGAAATCGTCCTGATCACGGGGGCGGGCAGCGGCATTGGCCGGCTCATGGCAGAAAAGTTTGCCAGCCTGGGCGTCTCTCTGGTTCTATGGGATGTCAACCAGGAGGGCATGAAGGAAACTGCAAGACTAGTGAAGGAGAAAGGGGCAACTAGGGTCCACTACTACATGTGTGACTGCAGTGACAAGGCTAAAGTCTACAGAGTGGCTGACCAGGtcaagagagaggtgggggatgtgAGCATTCTCATAAACAACGCTGGCATCGTCACAGGCAGGAATTTCATGGACGCGCCAGACTCCCTCATTGAGAAAACCATTGAAGTAAACACCATGGCACACTTTTGGACTTATAAAGCCTTCCTCCCAGCGATGACTGCCAACAACCATGGTCATCTGGTCAGTGTTGCTAGCACAGCGGGTATGATTGGTGTCAATGGACTAGCAGATTACTGTGCCAGCAAGTTTGCTGCTATTGGCTTTGCTGAGTCTGTGGCTCTGGAGCTGCTGGCAACGGGGAAGGATGGTGTCAAGACTACCATTGTGTGTCCACACTTCATGAACACTGGCATGTTCGATGGCTGCAATTCTAAGTGGCCTCTCTTGGTGCCTGTCCTGGATCCAGACTACGTAGCAACGAAGATAATTGAGGCCATTTTAACTGACCAGGTCTACCTTCTGCTCCCAAAGAGCATGTATATTCTCATGGGCATGAAGAAGATTTTACCCTTTAAGACTGGGAATCTGCTGGGGATGTACTTGGGAGCGTTCAACTTTATGGATGCCTTCAAAGGACGCGTCAAGAAAGAGGCGTAGTGAAGAAGACGAGAGCAACCACACATACTAAGTACATTTTGTCTCAGACTCAAAGGTGATTAATACGGcatatcatgtttttttttcccccttaaATGTTTCTTTCTTTAACTAATTTTAGTGTATGACAAAGCCTACGTGCTAGTTTACATCGGCAGACGAGGGATACGTGTAGGCTATATAAGGTAATAAAATACTGCTAAATATGTAACGAATGTATGACCTCAATATGTATTTTCATAGCATCAACACAAGTAGACTTGAGTGTGCTTTTTGGATCGACACACTCAATATGAAATGTTTTCACGAGTTATAGTCACGTCATGAAGTTCACACTGTATGTTATCTCCTTACACTGACACAGGCTCAATAGAAAAATGTGGTTCCTTTTTCACTATCATTCAGTGGatactgtcccccccccccccccccaccccacacacacacacacacacacactttataatGCTTTGGCCTGAAGCAACATTGGAAGGGTTTGTATTGTCGAtgcactttttttttgttgtgtgtttttCTTTATACACCCATTGTTGGGTATTACGTAATTGTTCACATGGGTGTTGTAGAACATATTGTGCATGTACTAATCTAACAGCCAAGTAGAGAAACTCAGGAAAAAGTGTCATGTAAGGGATCATTATCTGTGTGCTGGATTAGTTTGTCTACAGTAGCCATCGAATATGGTTTACTCTATCGCCAATAGGAATGTTATGATAAATTATAGTATGTACCAAACAAAAACACTCATTTTCCAAACTGTTATTCTCTTAACTGGACCACCTACCCCTTTTTTATATTTGAATTTACTGACAGATATTTATTTATTGCTTAATCATGTACAATGTTTTACTTTGACATTGAAGATGAGATGACTGCATGACTTAACtaattttatttacattttctcATGTTTACATTTTAATAACCACAATAGCATTGTTTACATGTAACAATGTTGGTATTTGAATAAGTACTTTTAAGAGTAAAGGTACTTATTTAGGTTTGCTCTTGAAAAATAAAGTTAGACATTTGTCTTATCAGGTTATTTTCCCCTAATGGCTCCCATGCTTCTAGAA

Function

NR:

description
epidermal retinol dehydrogenase 2-like

GO: NA

KEGG:

id description
K15734 SDR16C5; all-trans-retinol dehydrogenase (NAD+)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021613077.2 True 2312 mRNA 0.42 7 56783278 56793172

Neighbor

gene id symbol gene type direction distance location
LOC110530945 LOC106568882 coding downstream 19976 56669907 ~ 56763302 (-)
LOC110530944 NA coding downstream 181961 56588784 ~ 56601317 (-)
lrrc53 LOC106568997 coding downstream 194725 56583026 ~ 56588553 (-)
LOC118965627 NA coding downstream 203832 56576857 ~ 56579645 (-)
LOC118965678 NA coding downstream 233699 56549500 ~ 56549579 (-)
LOC110530946 LOC106568881 coding upstream 21554 56813859 ~ 56827689 (-)
penka LOC106569009 coding upstream 35627 56828799 ~ 56840147 (-)
bpnt2 impad1 coding upstream 78029 56871201 ~ 56881832 (-)
LOC110530203 LOC106568877 coding upstream 103414 56896586 ~ 56946790 (-)
LOC110530205 LOC106568875 coding upstream 214967 57008139 ~ 57031674 (-)
G726278 NA non-coding downstream 232 56782379 ~ 56783046 (-)
G726279 NA non-coding downstream 3518 56779524 ~ 56779760 (-)
G726295 NA non-coding downstream 16685 56766106 ~ 56766593 (-)
G725346 NA non-coding downstream 141489 56641542 ~ 56641789 (-)
G725343 NA non-coding downstream 144513 56638125 ~ 56638765 (-)
G726403 NA non-coding upstream 158503 56951675 ~ 56951874 (-)
G726404 NA non-coding upstream 158801 56951973 ~ 56952179 (-)
G726430 NA non-coding upstream 195949 56989121 ~ 56989770 (-)
G726429 NA non-coding upstream 196792 56989964 ~ 56990336 (-)
G725280 LOC106568997 other downstream 194007 56588343 ~ 56589271 (-)
LOC110530186 tm56b other downstream 396762 56374588 ~ 56386555 (-)
G725007 LOC106568897 other downstream 550339 56219516 ~ 56232939 (-)
G724943 LOC106604981 other downstream 654990 56120203 ~ 56128288 (-)
G724400 NA other downstream 991793 55785517 ~ 55791485 (-)
G726496 NA other upstream 342969 57136141 ~ 57137113 (-)
chd7 LOC106599585 other upstream 493344 57224058 ~ 57305576 (-)
G726885 NA other upstream 1012216 57805388 ~ 57811422 (-)
G726900 NA other upstream 1026875 57820047 ~ 57846689 (-)

Expression


Co-expression Network