LOC110530946 (LOC106568881)


Basic Information

Item Value
gene id LOC110530946
gene name LOC106568881
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 56813859 ~ 56827689 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110530946
ACCATACATAGAGACTCCAGATCAAATCTAGGATATGCTCGGCTGCTCTGTTCAGGCACTTGAAGACGGGAAAAGCAACGAAGAAACCACGCAGAAGGTAGTTAGTTATATGTCAACAAGAAGTAAGTAGACAAATTCCTGTTTTAGTGAGTATCTTTTTTGCATTAATTACCATGCGCTTCACCGCGGAGTGCAAAGGTCGATTAAAGACCCGAATGTCCAGTGTTGAAAGGAGGCGATACAAAATATCCAAGGTTGAGCTGATTGTCTATTGAGGATCTCCAAGGAGCACAAACAAATTTGCCAGCATACAACAGttaaaccaaaacaaacagaactGTCTTTCCAGGGGTCAGCAAAATGAATGTCCTCTTGGAAACCTTTGTTCATTGTAATGTCCATCTATTACAACATGGAGGCATTTGTCAGATCGTTCATCTGACTTGAGAAGAAAAATGTCACTGGGGAAATCGTCCTTATCACAGGGGTAGGCATTGGCTGGCTCATGGCCGTCTGGTTCTTTGGGATGTCAACCAGGAGGGCATGAAGGAGACTGCACTAGTGAAGGAGAAAGGGGCAACTAGGGTCCACTACTACCTGTGTGACTGCAGTGACAAGGCGAAGGTCTACAGAGTGGCTGACCAGGtcaagagagaggtgggggatgtgAGCATTCTCATAAACAACGCTGGCATCGTCACAGGCAGGAATTTCATGGACACGCCAGATTCCCTCATTGAGAACCATTGAAGTAAACACCATGGCACACTTTTGGACTTATAAAGCCTTCCTCCCAGCAATGACTGCCAACAACCATGGTCACCTGGTCTGTGTTGCTAGCACAGCGGGTCTGATTGGTGTCAATGGACTAGCAGATTACTGTTTCCTGCAAGTTTGCTGCTATTGGCTTTGCTGAGTCTGTGGCTCTGGAGCTGCTGGCAACAGAGAAGGATGGTGTCAAGACTACCATTGTGTGTCCACACTTCATGAACACTGGCATGTTCGATGGCTGCAATTCTAATTCCTTGAGGTGGAAGCAGACGGCTCTCCTGGGGAAGTACCTGGGTGCCTTTGAGAACACAGAGCACTATGAGACAACATGCCTTAAGCTGCGTTGGTCCCTTGCACGCTGTTTGGCCCACGTTTAACCGATGGCCATTGCCAACACACAACTCAGACTGTGAATTGTGCGTTCTGTTAAATTCGAAGCCATTCCATATGAGCATCAGCGTCATTGGATACTGATAGCAAAGTGTAGATATGTGGTTATAACAGCTGTCTGCATTTCACAATGTTTGAAGACTCCAAGGGGATATTTGTTAGTATAACACAATTTTCCAACATTTGGATAATGGCTCTAGGTAAATTGTCGGCATTCAATTTTCACCAGATGGGCAATGGGAAGTATCAGGGAATTCCATCTGCATAGTGTTGGTGCATCATCATTGGTGCAAAAGGTAGATTCTATCACCTTTACTTATTTATTTGTGATACACAGACGTCACCCAAAGCCCTGCTGAAGGATTTTACATGTGCATTGATGGATTTCCATAACGATATATTTTAGGGAACTAGTGAGTGAAGGAGTTGATTATTCCAAAAACATTTTCACTACTGCATTACAAAAATATGTCAAAGCTGTTTGAATGTGCCTAATGCCACTGTTAAAAGAAATGCATTATTGTGCATAAATGAAAAACCTCTTATGTAGATTTGTGGTTGGGTGTGAGTATGTTGAACTTTTTATATGGCCATAATTCTGAATCCCCTTGGGATATGTGAATACTCgaaaaattataataaatattTTGTACGTT
>TU825111
AGACTTTTAAAGGATTTATTAACACATCTTTGTTCAGGtcaagagagaggtgggggatgtgAGCATTCTCATAAACAACGCTGGCATCGTCACAGGCAGGAATTTCATGGACACGCCAGATTCCCTCATTGAGAACCATTGAAGTAAACACCATGGCACACTTTTGGACTTATAAAGCCTTCCTCCCAGCAATGACTGCCAACAACCATGGTCACCTGGTCTGTGTTGCTAGCACAGCGGGTCTGATTGGTGTCAATGGACTAGCAGATTACTGTTTCCTGCAAGTTTGCTGCTATTGGCTTTGCTGAGTCTGTGGCTCTGGAGCTGCTGGCAACAGAGAAGGATGGTGTCAAGACTACCATTGTGTGTCCACACTTCATGAACACTGGCATGTTCGATGGCTGCAATTCTAAGTAAGTTATCAGCCATAAGAAGTGTTACTGTATATGGGATTACATTTCCCACTTTAAAGTTGCCATTGTGTTTATAAGAGGTTATTATCCTCATTGCACATTTGTAATAGTTTTTCTCATGAAAAGTTTGAGATGACCCTGCTGAAGGGTATTTATTCATCCATGAATAAATGAATATGCAATCCCTTTAAGAGCCAGGGCCAGTTCTGTTTTTATGGGACATGAAACTGAACAAGAGACTTTTTAAATTGAGATTGGTTTTATGAAGCGTGAAATGGAAGGCCTTGTCTCGGCATTGACATGGTGGAATTGACGATTGTGTTATGACATTAGTAACGAAGGTGCTGGGAGACTTCCTCTCTTAGCGTGTGTACACAATCACTATCAACAACAAACATGTAAGTACTTACTTTACACTAGACGAAATGCTGCTTACTGTGGACTGGTGGCCTCTGTTGTTGCCTATCCTGGATCCAGACTAAGTAGGTTGCCCTCAGTCTAGTTCTCTAGCCTGCCTCCCCACCTAAAGTAGATTAAAGTATTTCAATGGTTAATATCAGCCCGAGATGCCACTTTTGCAGCTTGTTTTTACTGTTCCTGATCCAAGCTAGCCTGTTAGTACGAGTCTTCAGACAGGACAGGAATAGCCAAACAGACTAGCGAGGTGTCCTAAAGTGGTCAGATTAGAGTAGACTATGTATGGTAGGGATTTACGGATGCACCAAATGGTCACAGGTGGCTTGAGTAAGGTCAATAGGTTAGGTTAAGTTGACCAGACGTCCCTGATTTCCGgtttaacacccccccccccccatgctttAAGACAATAGTCAAACGTTTTCATACCGTTAGTGTATGTGGACCTAAGCTTTTGAGCAGGGTTGCCAAGCAACAGAACTTTAGTATTTTCACTATGGACAAATGCATAGCCAGGCTAAACTGCAAGCACGTATGAAGTGTGCTACTTCACTGCATCAGGCAGGCTCAATAAGATCAGATATAATCAAGATAAACATACGTTTTACAAAAATGCTATGTTTCTTCACTAGAATAAGGATTACTACATTCAATAACGTGGTTTTCTTCAGATATTGTGAGACACACTGGTTGTTATTTGGGAGCACACATTAATGATCACAGGTTCTAGTTGAAAACTTCACTTCTGATCCACTATAGATGGTCATTTATCCAAGAGAGTTGATAATGCACAAATGGTGACGTGAGTGTTTAATAAAGTGGCTGACCTTTCCTCACCGTGTCCTCGTAGTTCCTTGAGGTGGAAGCAGACGGCTCTCCTGGGGAAGTACCTGGGTGCCTTTGAGAACACAGAGCACTATGAGACAACATGCCTTAAGCTGCGTTGGTCCCTTGCACGCTGTTTGGCCCACGTTTAACCGATGGCCATTGCCAACACACAACTCAGACTGTGAATTGTGCGTTCTGTTAAATTCGAAGCCATTCCATATGAGCATCAGCGTCATTGGATACTGATAGCAAAGTGTAGATATGTGGTTATAACAGCTGTCTGCATTTCACAATGTTTGAAGACTCCAAGGGGATATTTGTTAGTATAACACAATTTTCCAACATTTGGATAATGGCTCTAGGTAAATTGTCGGCATTCAATTTTCACCAGATGGGCAATGGGAAGTATCAGGGAATTCCATCTGCATAGTGTTGGTGCATCATCATTGGTGCAAAAGGTAGATTCTATCACCTTTACTTATTTATTTGTGATACACAGACGTCACCCAAAGCCCTGCTGAAGGATTTTACATGTGCATTGATGGATTTCCATAACGATATATTTTAGGGAACTAGTGAGTGAAGGAGTTGATTATTCCAAAAACATTTTCACTACTGCATTACAAAAATATGTCAAAGCTGTTTGAATGTGCCTAATGCCACTGTTAAAAGAAATGCATTATTGTGCATAAATGAAAAACCTCTTATGTAGATTTGTGGTTGGGTGTGAGTATGTTGAACTTTTTATATGGCCATAATTCTGAATCCCCTTGGGATATGTGAATACTCgaaaaattataataaatattTTGTACGTTTTTTGTCATCTGATAGTGTGCGATCATTCAGCAAACACTCATACTCAGTGCAAACCTAGTCAGTGCTAATACAATAGTTACTGGGGTGTATTCAGTTAGTTAAAGCAATCTGATGCACAACTGGTATGATTCTCATTCTATGGCCATATGTTATTATCTACACCATGCATTTTTATCTAAACTTTCTGTAACATTGTACCCTCCTGAACAAGCCCCTGGTGATGGGGGAACAGTTTTTGCTGTAAGAGCTGGGCCATTTGGGTACTGACACTCAGCTTGACCTCTACAACCTAATCAGATGGCTACTGGGAACAAAAGTCCTCAAGTCATTGGCTTAATTTACCATGGAGCATTGAGatgtattttaaactgcaaaacccttaccgCACCACTGCACTTCATATACAAGAGTTGGCTGGCCTTCTCAAGTCaatcgtaggctcagtcactggaatcatttatttataaagccattttgggtttactaccattttatttggccatttttattgttcagaaatgtggtgggtacttgCTTCGTTCGGCAGGagtttatcctgctaactgttccaaatgtccaaactgaatttAGTAAAAGGGCTTCTATATACTCTGCACCATCGGCTTGGaatgccttacaaaatacttttaaactggaagaacttgtcccgattggtgtttttaaatcactgatgaaggatttttaGGCCGATTCCCTGatatgtcaatgtttttaattagctgttttatgattttgttatactcttgtgaattctatgtttttttttcaatAGATTacctgtagtttttcatgttgtctgtctgtaattgtgtaatgacttggtgctgcctatctggGACAGGact
>TU825113
TCAAATCTAGGATATGCTCGGCTGCTCTGTTCAGGCACTTGAAGACGGGAAAAGCAACGAAGAAACCACGCAGAAGGTAGTTAGTTATATGTCAACAAGAAGTAAGTAGACAAATTCCTGTTTTAGTGAGTATCTTTTTTGCATTAATTACCATGCGCTTCACCGCGGAGTGCAAAGGTCGATTAAAGACCCGAATGTCCAGTGTTGAAAGGAGGCGATACAAAATATCCAAGGTTGAGCTGATTGTCTATTGAGGATCTCCAAGGAGCACAAACAAATTTGCCAGCATACAACAGttaaaccaaaacaaacagaactGTCTTTCCAGGGGTCAGCAAAATGAATGTCCTCTTGGAAACCTTTGTTCATTGTAATGTCCATCTATTACAACATGGAGGCATTTGTCAGATCGTTCATCTGACTTGAGAAGAAAAATGTCACTGGGGAAATCGTCCTTATCACAGGGGTAGGCATTGGCTGGCTCATGGCCGTCTGGTTCTTTGGGATGTCAACCAGGAGGGCATGAAGGAGACTGCACTAGTGAAGGAGAAAGGGGCAACTAGGGTCCACTACTACCTGTGTGACTGCAGTGACAAGGCGAAGGTCTACAGAGTGGCTGACCAGTAAACTGTCTCTCAAAGCAAACTGATGTTTGGAAAATCTATTGTGCTGGAGGCACGTTGAATGAATGGGGAAATGAGGGAGTAGCTGGTTACCAAATGTCCAGTGTTGCTGAGAATAATGCTTGATTCTGCCTGCGGAGCTTTCCAGTGGGGGTCTGCGAGAAACCGGTGGGTGGCGCATTTTATGAAGCATTAGGGAAATTCCCGTCTGACCAAAAGACGACGAGACCCACCCAGATCCTTACTGTGAGCTGTCCAGGAGGAGACGCATCAACCACAAACAAAAGAGGGACATGTCTTCTGATTTCAATTGGGTCTGCTGGATGGTTGGGATTTCTCCCTAAGGATTAGCCCTCTGACTCCCTGACCCTGTACCTCTGCAATGAGATCGCCAAGATGATCGGTGAGTAAAAGACACTTTTGAGGTAATGGCGAAGGTGACCACAGATGATATCTAGATGCATGGAAGGGATAATTTGACCAAGAACTGGGTGAACCTCAACCTTCCCAAACCGGCTGAAGCAATGACGACAATGGCGTTCAGTATGGTCTTTCACCACTTCTACCATGAGACCTGAGTCCAAGCCAGCAACCTGTACACAGCATCCAGTCAAAACTATCAACTGCCTTTGCTCTCAGGAGTGCGACATGAGTCCATGTGGAGTGAGCATTGAGAAAGATCCATCCAAACATGCTGGTGTACTGGTAGGAAAATGGACAAAGACATAATGGACTGTAAAGGACAGTGGCGGCTAAGGTGAGAGACATTATCAagggccatccactttgaacatGTGCCAATGGTAGGATGAACTGAAACACTATCTGAAGAACATGTAGAAACACCAGAAGGATGGGTGTCGAGAGGGGGGTGGTCAACAGTGCGCGTAATTCATTTAGGCTTATCCAAAATTGTCAGGTTgatttgtggaggtctgcacATTGCAACATTTATAGTAATTTAGtctaagaatgcattgagataccaATCTGTCATTACTACAATTGATGAGAGAATTTCATGCTAGAAAAATaagataaatatactgtatatatactgtacaatgtacATTCTGCTAAGTTGACGGTCTTAAATTAAAGTGACAGAACCAACATGAAGCACTAAGGACTGTCATCCTAAATTTGGGTTGGATAATTTATCAGTAGTTATAactatgatttggaaaggcttcTAGAGACAGATATGCCCCTAAAATGTGAAGAGAGCCATTAGATTGTAGCTTGGGCTACTGTTATAacgtgttctctctctttcctgtgaAAATCAATATGCATTTACCCTAAACCAAATACGGGAGATCtctagagactcagagagaactGGAAATGCAAAAATAATTGCGTAAACTGGCTCTGCAAAACAGAGAGGCTCGATTATCTTTTGGCAGGTCAAGGGGGCACTTGTGCAATCAATGGATGTTGTACTTTTGTCCCAGATCACTCTTCTAACGTGACTGATCTTGCCGAATACATTGCCACTGTTGCTGAGAATAATTCCCCACAACTGGAGTGGACTCCTGCAACTTGGTTGGAATCCCTGTTTGGAAGTTAGGGATCCCAAATTCCCAAATGGGCTGCGGCATGTGTTTTTGTCTCTTAGTTTGTATAAATTGTGTTATTTAACATGCTGTGTGCGTGTAGTTTTGATAAATTCACTCCCATTTTATAGAAGTAGCTTTTATTATGATAGTATTAACATACTAATTGGATTGTACAACCCAGAATGAAGGGCTTGAAATGAAGTGTCTGGTTTTATGTGTTGATTTCCCTTACTTCAATCGAAATATGGTATGGAAGTTAAAGAATATTTACCTTAAAATGTAATGATTTATTTTCACACAAGTGATAAAAGGGTGGAATGTGAATTTTACTTTGTACATGTTGTGGGAAAATTCTTATACAGGGACACttgaagtcaatcttaaatgagtAATCGTTTATTTTCCGCACGTTGGAGAgattccaaccaactcaatgcaccatagtacacatgtcaatcaggagctctcCCTGGGCAGACCCAGCACTTGTCTTATATacggctatacacagacaagttatatttgcatgatttagcataattaattaatcattaccgttttgtttcatttatgtgaccgaccaatactggttcataacatgtgacagaccaacaccTCATGAggcttctctctaagctgagatcTTGAAACTGAGATGTCTTTCCTTTGTTCTCAAAACACGGTCTGGACGCACTGCaaaattgcagctactgataaGAGGAAGATTTGTTCAGTCAACAACTTCAATGAACATAGAAATGGGTTTATAGAACAtcacatgaatagaacacagaaattggttataAGAAAAGCACACATTAAAATTCCCATTACATGCATCTTGTCTTTGGTGTCATAAACAATCCTTGGTTCCTACCTGTGCCTGGTAAAGATATGAGGGTGGCCGTCATGACCTCCTACTTTAGACTATTTGGCAGAACGCCCAGAATATGTTCTTTAAGATAGGAGAGGGTGCCAGGCGCATGACAGAACCAACCCAATGAACTATGCCTATGTAACGTGTCTGTAACCAGTATATAAGGGAACTAAACGGGACTGGCCCGTGGGAGCTCCTGACAGATGTTCACTATGGTGCAtcaagtttgttggaacctctccagtgaGCTTACAATaaagaatgattaatttcagATTGTCGAATTTCcacgacaccatacacaccatctgcctggtacagttgaaaccgggactcatctatgaagagcacacttttccagtgtgccagtggacatggaaggtgagcatttttccactgcagtcaggtcaagaccctggtgaggacgacaagcacgcagataagcttccctgagatggtttctaacagtttgtgcagaatactttgattgtgcaaacccacagtttcatcagctgtatgggtggctggtctcagacgatcccgcaggtaagaagccggatgtggaagtcctggcTGGTTACACTTGGTTGGATGTACAGCAAAATTTTCTAAACAAcggacaaacactttacatgttacattGGTATTTTTGTTCTCTCTAACATGACaactctatggaaaggggagatgCTTATGAACATCATTCTCCATTTTGATCTACGATcaccacaagtgtcacgggactataGAAATGACGGAATTATGGAGGTagttgtgccaacaaaaataaggggtctTTTTTTGCTATTTATAAATGATATTCAATGCGTTTTATGGGCTGTAGTAGTAAAAGACAAATTCAATATTTTTGGGGGATACCTAAAAGTTGtactaaaattctaaatcaaatagctagaTAATGAGCC

Function

NR:

description
epidermal retinol dehydrogenase 2-like

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110530946 False 1817 mRNA 0.42 6 56814726 56827689
TU825111 False 3343 lncRNA 0.41 3 56813859 56819026
TU825113 True 3988 lncRNA 0.42 5 56819103 56827668

Neighbor

gene id symbol gene type direction distance location
LOC110530198 LOC106568881 coding downstream 21554 56783278 ~ 56793172 (-)
LOC110530945 LOC106568882 coding downstream 51424 56669907 ~ 56763302 (-)
LOC110530944 NA coding downstream 213409 56588784 ~ 56601317 (-)
lrrc53 LOC106568997 coding downstream 226173 56583026 ~ 56588553 (-)
LOC118965627 NA coding downstream 235280 56576857 ~ 56579645 (-)
penka LOC106569009 coding upstream 1110 56828799 ~ 56840147 (-)
bpnt2 impad1 coding upstream 43512 56871201 ~ 56881832 (-)
LOC110530203 LOC106568877 coding upstream 68897 56896586 ~ 56946790 (-)
LOC110530205 LOC106568875 coding upstream 180450 57008139 ~ 57031674 (-)
LOC110530209 NA coding upstream 313290 57139075 ~ 57146180 (-)
G726278 NA non-coding downstream 31680 56782379 ~ 56783046 (-)
G726279 NA non-coding downstream 34966 56779524 ~ 56779760 (-)
G726295 NA non-coding downstream 48133 56766106 ~ 56766593 (-)
G725346 NA non-coding downstream 172937 56641542 ~ 56641789 (-)
G725343 NA non-coding downstream 175961 56638125 ~ 56638765 (-)
G726403 NA non-coding upstream 123986 56951675 ~ 56951874 (-)
G726404 NA non-coding upstream 124284 56951973 ~ 56952179 (-)
G726430 NA non-coding upstream 161432 56989121 ~ 56989770 (-)
G726429 NA non-coding upstream 162275 56989964 ~ 56990336 (-)
G726453 NA non-coding upstream 193992 57021681 ~ 57022411 (-)
G725280 LOC106568997 other downstream 225455 56588343 ~ 56589271 (-)
LOC110530186 tm56b other downstream 428210 56374588 ~ 56386555 (-)
G725007 LOC106568897 other downstream 581787 56219516 ~ 56232939 (-)
G724943 LOC106604981 other downstream 686438 56120203 ~ 56128288 (-)
G724400 NA other downstream 1023241 55785517 ~ 55791485 (-)
G726496 NA other upstream 308452 57136141 ~ 57137113 (-)
chd7 LOC106599585 other upstream 458827 57224058 ~ 57305576 (-)
G726885 NA other upstream 977699 57805388 ~ 57811422 (-)
G726900 NA other upstream 992358 57820047 ~ 57846689 (-)

Expression


Co-expression Network