penka (LOC106569009)


Basic Information

Item Value
gene id penka
gene name LOC106569009
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 56828799 ~ 56840147 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021613078.2
CTTGCATTATGAACTCAGCTCACATAAGCATCCATTTTGAGCATCCTCCTGAGTATTTAGCTTCGTGAACGACGAGCTCTTCCATCCGTGAGCCTTTAGAGAAAGCTGATAGGCTCAATCGCAACAGTTCTAAATTTGTTTTTTTCCAGCGACTTGGTAAGCACCGGGGGAAATACTATATTTGGTATAAAACCTCACAATCAACAGTTCCTACTGCAACACCACAGGGATTGAACTAAGCATAAAAAACAGAGTCTATGGCTGTCCCGGGGAACTCACTATGGAGGCTGCTTCTCTGTGCGTATTTTGCGCTCACGGTCGGAGCGGACTGCGAGAAGGACTGTGCGCTCTGCCTCAACCGCATACTGGGACAACAGACGGCAATTAACACTCTGACATGCTCAATAGAATGTGAGGGCAGCCTGGACACCACGAAGCTCCGCCTCTGCCGAGACGTCCTATTGGAGGAGGAGCCTGTCGCTGTTGACGAAATCAAACAGGATGGGGTGGAGGGCGAGCAGCACCAGCTGGCCAAGAAGTATGGCGGCTTCATGAAGCGCTACGGGGGGTTCATGATCAGGAGGAGCCCACCCGTACAGGAtggaggagtgcagggaggacaGAACAGCCCAGTGGCTGAGGAAGAGGACATCCGTCTGGAGATCCTGAAGATCCTGAATTCAGAGGCCGAGGCGCAGAGAGACGGAGAGTTGGCCAAGCGCTACGGGGGGTTCATGAGGAGAGGGGGGGACTTCGGTGCTCTGGAGGTGGCGGGCAGGCCATTGAAGAAGCGTTATGGGGGCTTCATGAGGAGGGTAGGGAGGCCTGAGTGGCTGGAGGATCAGAAGAACAAGGGGGGGCTCCTGAAACGCTCCTGGGAGGGGCAGGGGGTTGACTCCCCCCTGGCTGAGATACAGAAGAAATATGGCGGATTCATGGACTAGGGGCTGCCCCTTCTCCAACTCCTCCTGATGAGTCTGGACTCTCAATATTGATCAGATGATCCATTCTTATTCTGTTGTTGTGCTTGTACTGTGCtgctttttgtttgtttgggtTTACTGTGACAAAAAAAACACTTAGCCTATCAGGTGATGAGAACTACATTTATGACAACCAGTACTGTATGTTTTATGGGTTTGGTTATTTATAAATTAACCCGTGTTCATTGTGGTGTGCGCGGGCTGGGGCATGTGTGAAAAACCAATCATGGCATGacctgtttgctctctctctttgactTGCCACTGTTTTTAAATCGATAGTTAACTTTTTTGAAGTGTTAGTTGATTTTAGACTTACCTGGGGTATTGTTGTGTCATCCAAACCATTTTTAATGGTTGGTTATTTAGTATTGCCCAGAATCTCTTGGCAAGGCAAGATGAAAATATGTCGGTGGCTAGACCTACTTTCCACCGTGCTCACACTTGTCTCAGTATGCTGATGTTGAAACATGTTGCTTTCAGTTGAAAATGTCCTCGTTTTGTGTTCTTTCTatagagaacagaacagcatTTGAGACCAATTAGTTGTACAAAACCTAATAAACCCATGAATCCTGCAGAAATAA
>TU825127
ACATAAGCATCCATTTTGAGCATCCTCCTGAGTATTTAGCTTCGTGAACGACGAGCTCTTCCATCCGTGAGCCTTTAGAGAAAGCTGATAGGCTCAATCGCAACAGTTCTAAATTTGTTTTTTTCCAGCGACTTGGTAAGCACCGGGGGAAATACTATATTTGGTATAAAACCTCACAATCAACAGTTCCTACTGCAACACCACAGGGATTGAACTAAGCATAAAAAACAGAGTCTATGGCTGTCCCGGGGAACTCACTATGGAGGCTGCTTCTCTGTGCGTATTTTGCGCTCACGGTCGGAGCGGACTGCGAGAAGGACTGTGCGCTCTGCCTCAACCGCATACTGGGACAACAGACGGCAATTAACACTCTGACATGCTCAATAGAATGTGAGGGCAGCCTGGACACCACGAAGCTCCGCCTCTGCCGAGACGTCCTATTGGAGGAGGAGCCTGTCGCTGTTGACGAAATCAAACAGGATGGGGTGGAGGGCGAGCAGCACCAGCTGGCCAAGAAGTATGGCGGCTTCATGAAGCGCTACGGGGGGTTCATGATCAGGAGGAGCCCACCCGTACAGGAtggaggagtgcagggaggacaGAACAGCCCAGTGGCTGAGGAAGAGGACATCCGTCTGGAGATCCTGAAGATCCTGAATTCAGAGGCCGAGGCGCAGAGAGACGGAGAGTTGGCCAAGCGCTACGGG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021613078.2 False 1570 mRNA 0.48 3 56828799 56840147
TU825127 True 707 TUCP 0.53 3 56829641 56840126

Neighbor

gene id symbol gene type direction distance location
LOC110530946 LOC106568881 coding downstream 1110 56813859 ~ 56827689 (-)
LOC110530198 LOC106568881 coding downstream 35627 56783278 ~ 56793172 (-)
LOC110530945 LOC106568882 coding downstream 65497 56669907 ~ 56763302 (-)
LOC110530944 NA coding downstream 227482 56588784 ~ 56601317 (-)
lrrc53 LOC106568997 coding downstream 240246 56583026 ~ 56588553 (-)
bpnt2 impad1 coding upstream 31054 56871201 ~ 56881832 (-)
LOC110530203 LOC106568877 coding upstream 56439 56896586 ~ 56946790 (-)
LOC110530205 LOC106568875 coding upstream 167992 57008139 ~ 57031674 (-)
LOC110530209 NA coding upstream 300832 57139075 ~ 57146180 (-)
LOC110530210 LOC106595335 coding upstream 335724 57175871 ~ 57180428 (-)
G726278 NA non-coding downstream 45753 56782379 ~ 56783046 (-)
G726279 NA non-coding downstream 49039 56779524 ~ 56779760 (-)
G726295 NA non-coding downstream 62206 56766106 ~ 56766593 (-)
G725346 NA non-coding downstream 187010 56641542 ~ 56641789 (-)
G726403 NA non-coding upstream 111528 56951675 ~ 56951874 (-)
G726404 NA non-coding upstream 111826 56951973 ~ 56952179 (-)
G726430 NA non-coding upstream 148974 56989121 ~ 56989770 (-)
G726429 NA non-coding upstream 149817 56989964 ~ 56990336 (-)
G726453 NA non-coding upstream 181534 57021681 ~ 57022411 (-)
G725280 LOC106568997 other downstream 239528 56588343 ~ 56589271 (-)
LOC110530186 tm56b other downstream 442283 56374588 ~ 56386555 (-)
G725007 LOC106568897 other downstream 595860 56219516 ~ 56232939 (-)
G724943 LOC106604981 other downstream 700511 56120203 ~ 56128288 (-)
G724400 NA other downstream 1037314 55785517 ~ 55791485 (-)
G726496 NA other upstream 295994 57136141 ~ 57137113 (-)
chd7 LOC106599585 other upstream 446369 57224058 ~ 57305576 (-)
G726885 NA other upstream 965241 57805388 ~ 57811422 (-)
G726900 NA other upstream 979900 57820047 ~ 57846689 (-)
LOC110530228 LOC106569007 other upstream 1022591 57858233 ~ 57864165 (-)

Expression


Co-expression Network