LOC110530209


Basic Information

Item Value
gene id LOC110530209
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 57139075 ~ 57146180 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002474497.2
tctagtctaaatataatttatatgAACAAGAATAAggttgctgcagtttgacagaGGACTGACATGAGCATGATGCTGCCTATAAAATGCCTATTTTGTGTGAATATAGGTGTTGTGTAGGAACTAGAATATTTCAGTGATATTTCTGCTGTGTGCAGTCTTGACGGATCCAATGGGATGATGTGCCTTCGCTGATAAATGTATTATTTGCCATGTTAGGCTGTAGCCCTATTCGGACCGGTATTACTAGAGACGTTGGTTTTGTCATTATTATCCAAGCTATTATTCAAGCATGTGCGTTATTCCAGGGGACGATTCACACACGATTCGtaattcttatttttttattattaatttaATTGACTCTTATGACGGACTTTATTGCATCCGTGAAGATATGTCAACGTCATTTCTAGACGATAATAGGCTACACACTGACAACTCGCGCTTGGCTGCCAAATGTATAGGTCTCCATTATACTTAAATTGATTAAGTGTGATCATAATTATTTTAGCTATCCATCCATGGTATACGTCCTTCCTGATAGCAATGCCCTACATCCTGATGATTTGAGCTGCTGAACAGTGGCGGTTCAAGACCATTTCAACTGGGAGGGCCAAGCTGGGGTCAGTTGTACTGTTACGGGGCCAGTTACATTAGACGTTATTGTTGTCATTGTTTTCTTCACTGGTATTTCTTTAAAATACCATGTTCATAATCATCATCGTTGCCACTGTCTAATAATGGATGTAAAATAAAACGATAAGAAACAGTTTGACAATCATTAAAATGATTTCATACTCCACATTTAGGGGGTCCAAAATTGTTGTCACATGGGCACTGGGGTTGGTGCGAAAACATACAGGAAggtgctctccaggaacagggttggagaaccctgacCTAGGTCAACAGCCAGCCAGGGTTTCATTAAATAAACTATAGGCAATACTTTTTTATTGCGAAAAACAGCATTGCGATAGCCTATAGCCTACATCTTCTGATTACCGATACACGGTTCTGTTGTGCTGCCTGGTGGCCGACATGCCTACCTAtgcccctctatctctctttctttgcTGTGAAATATGTTTGTTCTCGAAATAGACCACGGAGAAAAGTTTCCTCCGTTGCAAAAATACAGAAATGTAGGAGTAGATCGAAGCTTGACATCCAGTAATGGGAGTCGACGGACTCCACACCATATAGCAGactgaccaggtgaaagctgtgatccctttgaacggggtatggtagtaggtgccaggtgcaccggtttgtgtcaagaactgcatcactgctgggtttttccacactcaacagtttcccgtgtgtatcaagaatggtcaccacccaaaggacatcaagccaatttgacaactgtgggaagcattggagtcaacatgggcccgcATCCCTGTGGGactcttttgacaccttgtagagcatgccctgacaaattcaggctgttctgagggcaaaaggagggcataaaactcaatattagaaaggtgttcctaatgtgtggtatatataaaacacaagcAAATCACATTGACAACACCGGACCTTTAAAGGGTACCTTAGTGAAGTGTTATCATGCATGGGATGGCGGACTAACTATGCCCATGTCAAGGTATTCCAATAAACAGTTACACAATGATAAACGACACCATGGTGTTGTCCCAAACCTTTATTGCAGCCCTCGAACAGAACATTTacagcacgtgtcaaactcattccacggagggctgagtgtctgcggATTTTCGCTCCTCCCTGGGTGTCTAGGTCCtcattgaaagaaaaaaaaaaaaaaaacccgcagacactaggTCCTGCATGGAATGAGTTCGACACCCCTGATTTATAGAAACTGTGACAGCCGTCCAACTCTGCATACAGAATGCATTTTCACAATAATTTAAAAACCTGTTAGCCTATACAGCTGGATACTATGTTTACCTCTATGTATAACATGTTTTTGTGTGTAAACCCCTGTTCATATGTGAACtgcaataaaaaataaacactgaGATTGTAGTGATGTTTTCGGTTACTGCTggttgtggaatgtctttccctTGGAGTACAGTCCATTCTGAGCAGAAGAGCCTCAACTGTCACATATGGCTTTGAAAAAAGTGAagcactttttatttatttaaattttcaTAATTAAAAAGGTCTGATCCTaaaaaagtgtatttttatttaaaaatctAGAACAGATCTATCTTGTAAAGTTTTgtataatgtaaaattaacaccACGTTAAAAATTCACATTGACTTCAAAAGTGTTAGGTAATAGAAAAAGACCCACTAGTGTTATAGAAAAAAGACAATAAGTCCTAAGAACTAGATTGCAACCACTTGTTTTCGTGTACATCGAAACAAACCGTTATTTGGTTTCCTCAGAGAAGATTTGCATTGCAGCATTCCCTACAGTCCATCACCTTATCACCATTATCTCATCCAGCAGGCCCCTTATTACCACAATGTACAGAAAACTTCTACAATGgaaaaatgtcaaacaaaaacacactcaTCTGAATTCACAGAAACATTACATCGTTGGAGGAACACAAACTAAGCACACGACTGAGTTTCCTTGAAAAAAATGAAATCATTTTTTTTCCCTTCACCGTACAGCCTTAAGTTCAAAGCATGAGCTAGCATCATCCTTGTAGTAAAAACAAACCATGACAACATCATTAACGACAACATCAAAATTAAATACTAGCACAAGTCGAGTTAGATGTCGCTAGGACAGAGTGAGCAGGTTACACTCAAGTTCCCTTCTAGATGCACAACAGTGTTTCTCTTTGAACAGTTGGTTTGGGGGGGTCACGCACTGAAACACATGCAGAGGGACAAAAAGAGGTGGTCCGGGTGTCTGCTAAATCAGCAACAATTACAGACATTCAAAAACCTTTGTTCCAAATGAAGCACTTACCCTGGGCTTGAGCCAGTTAATATACAAGTGAAAGTGGAACTGTACATTTAGAGAGAAAGGGAACAAACGTTTATGAACATTACTGCCGCAgactttaaatatatatatatatatatatatttttttacagtttaCGTGTACTGACTGATGAATTTCGAATAATCATGTTCCTGTTGGACCACGTGTGTGCGTGTGGAGAGCAGATCTATTGGAGGACCTGGGACACTGCACAGCAGCCTGTTTTATCAGGAGACTGGGTTGGGTCAGACCATTAACCCATAACAGCTACGCCCACACTGAGCTGCACCTAAGAGTTACTACCAGACTCTGAGACATGCCCTTCCTTCGTCTCCAGGTAAAAATCAGTTTTTCCCAGAACAAATGGCATATGCCAACATTTCTCCCATTTGGAGAGTTTACATCCAACCCAAATACAgtaaaaa
>TU825321
GACACCATGGTGTTGTCCCAAACCTTTATTGCAGCCCTCGAACAGAACATTTacagcacgtgtcaaactcattccacggagggctgagtgtctgcggATTTTCGCTCCTCCCTGGGTGTCTAGGTCCtcattgaaagaaaaaaaaaaaaaaaacccgcagacactaggTCCTGCATGGAATGAGTTCGACACCCCTGATTTATAGAAACTGTGACAGCCGTCCAACTCTGCATACAGAATGCATTTTCACAATAATTTAAAAACCTGTTAGCCTATACAGCTGGATACTATGTTTACCTCTATGTATAACATGTTTTTGTGTGTAAACCCCTGTTCATATGTGAACtgcaataaaaaataaacactgaGATTGTAGTGATGTTTTCGGTTACTGCTggttgtggaatgtctttccctTGGAGTACAGTCCATTCTGAGCAGAAGAGCCTCAACTGTCACATATGGCTTTGAAAAAAGTGAagcactttttatttatttaaattttcaTAATTAAAAAGGTCTGATCCTaaaaaagtgtatttttatttaaaaatctAGAACAGATCTATCTTGTAAAGTTTTgtataatgtaaaattaacaccACGTTAAAAATTCACATTGACTTCAAAAGTGTTAGGTAATAGAAAAAGACCCACTAGTGTTATAGAAAAAAGACAATAAGTCCTAAGAACTAGATTGCAACCACTTGTTTTCGTGTACATCGAAACAAACCGTTATTTGGTTTCCTCAGAGAAGATTTGCATTGCAGCATTCCCTACAGTCCATCACCTTATCACCATTATCTCATCCAGCAGGCCCCTTATTACCACAATGTACAGAAAACTTCTACAATGgaaaaatgtcaaacaaaaacacactcaTCTGAATTCACAGAAACATTACATCGTTGGAGGAACACAAACTAAGCACACGACTGAGTTTCCTTGAAAAAAATGAAATCATTTTTTTTCCCTTCACCGTACAGCCTTAAGTTCAAAGCATGAGCTAGCATCATCCTTGTAGTAAAAACAAACCATGACAACATCATTAACGACAACATCAAAATTAAATACTAGCACAAGTCGAGTTAGATGTCGCTAGGACAGAGTGAGCAGGTTACACTCAAGTTCCCTTCTAGATGCACAACAGTGTTTCTCTTTGAACAGTTGGTTTGGGGGGGTCACGCACTGAAACACATGCAGAGGGACAAAAAGAGGTGGTCCGGGTGTCTGCTAAATCAGCAACAATTACAGACATTCAAAAACCTTTGTTCCAAATGAAGCACTTACCCTGGGCTTGAGCCAGTTAATATACAAGTGAAAGTGGAACTGTACATTTAGAGAGAAAGGGAACAAACGTTTATGAACATTACTGCCGCAgactttaaatatatatatatatatatatatttttttacagtttaCGTGTACTGACTGATGAATTTCGAATAATCATGTTCCTGTTGGACCACGTGTGTGCGTGTGGAGAGCAGATCTATTGGAGGACCTGGGACACTGCACAGCAGCCTGTTTTATCAGGAGACTGGGTTGGGTCAGACCATTAACCCATAACAGCTACGCCCACACTGAGCTGCACCTAAGAGTTACTACCAGACTCTGAGACATGCCCTTCCTTCGTCTCCAGGTAAAAATCAGTTTTTCCCAGAACAAATGGCATATGCCAACATTTCTCCCATTTGGAGAGTTTACATCCAACCCAAATACAgtaaaaattttttttaaaaaagaccacaaaataaataaaatagtaaaaaaatggACACAAGCCTGGCTTGGGGATAACTCATTGTGTTCCGTTAGATGTTCACCGTTCTGGCTGGAGGTATGAGTAAGTCAAAAACACTTTCAGTATTAAAGAAGTAACAGTGAGAGCAAGGTACTAGGAGTTTGAACAAACAAAACTGAAATTGAAATGAGTCTCAAACGCATCTTAATTAATGAGAACTACGGCTCATAGGATTGTTTTATAGACATACAGTCTATAAAATGCACACACgcaaacatacactatatatacaaaagtatgtggacaccccttcaaattagtggattcagctatttcagccactgcCGTTGCTGGCAGGTTAATAAAAATtgagcacaaagccatgcaatctccataaacaaacattggaagtagaatggtcttactgaacaGCTCAATGACTttaaacgtggcaccatcataggatgccacctttccaacaaggaggaggaataatggtctggggctgtttttattggttcgggctaggctccttagttccagtgaagggaaatcataatggtacagcatacaatgaaattCTAGCAGATTCTGTGCTTTAACTTTGTGacagcagtttggggaaggccctttcctgtttcagtatgacaatgcccccatgcacaaagcaaggtccatttagaaatggtttgtcgagatcagtgtggaacaacttgactggcctgtacagagccctgacctcaaccccatcgaaaacctttgggatgaattggaacaccgactgcgaggcaggcctaatcgcccaacatcagtgctcaacctcacaaatgttcttgtggctgaatggaagaatgtccccgcagcaatgttccaacatctagtagaaaagccttcccagaagagtgaagtggcggctgttatagcagcaaaggggagaccaactccatattaatgcccatgattttggaatgatatgttcgacaagcaggtgttcacatacttttggtcatgtagtgtacatctaTACACATTCTCAGTCATACACATATGGAAGCTCACACACTCACCCTACATCACCAGACTTGTCTGTTCACCTGTCAGCATAACTTTGCCCTAGATATGCAACATCTTGACATGTAGACTCAATACATACTGGTAATACAAAACTGCAGCTTTGCATCTTCACATTTAACAAAAAACTGAACTCGGCTCAGACGTGAAGTTCTTTGACTAGCAACATGTACCTCTGCTTGCTATACACAGGAAATGGAAAACAAACTACATTCCATTAGCGAAAAGCTACCCTCCCATTAACTACCTACATCTGTAAGAGAAATTAATTGATACTTGTCATTAtaagaaaaaaaaaggaaaaaaaatatatagggtAAATGAAAAAAATCTAACAAGTTCTGGAAGTGAGAAAAACAAGTTTCTGGGTGTGCGAGTGAGAAATAGGACAAATAGGAGAGAGTGTTGAAGGCCGTGATGGCGCTTTTCATTCTCTGGAGGTGGGAAAGCACGACTGCATGCGCTCAGTGGGATGCGATGTGGGCTGGTCCTCAATCAGTCTTACCGC
>TU825322
GACACCATGGTGTTGTCCCAAACCTTTATTGCAGCCCTCGAACAGAACATTTacagcacgtgtcaaactcattccacggagggctgagtgtctgcggATTTTCGCTCCTCCCTGGGTGTCTAGGTCCtcattgaaagaaaaaaaaaaaaaaaacccgcagacactaggTCCTGCATGGAATGAGTTCGACACCCCTGATTTATAGAAACTGTGACAGCCGTCCAACTCTGCATACAGAATGCATTTTCACAATAATTTAAAAACCTGTTAGCCTATACAGCTGGATACTATGTTTACCTCTATGTATAACATGTTTTTGTGTGTAAACCCCTGTTCATATGTGAACtgcaataaaaaataaacactgaGATTGTAGTGATGTTTTCGGTTACTGCTggttgtggaatgtctttccctTGGAGTACAGTCCATTCTGAGCAGAAGAGCCTCAACTGTCACATATGGCTTTGAAAAAAGTGAagcactttttatttatttaaattttcaTAATTAAAAAGGTCTGATCCTaaaaaagtgtatttttatttaaaaatctAGAACAGATCTATCTTGTAAAGTTTTgtataatgtaaaattaacaccACGTTAAAAATTCACATTGACTTCAAAAGTGTTAGGTAATAGAAAAAGACCCACTAGTGTTATAGAAAAAAGACAATAAGTCCTAAGAACTAGATTGCAACCACTTGTTTTCGTGTACATCGAAACAAACCGTTATTTGGTTTCCTCAGAGAAGATTTGCATTGCAGCATTCCCTACAGTCCATCACCTTATCACCATTATCTCATCCAGCAGGCCCCTTATTACCACAATGTACAGAAAACTTCTACAATGgaaaaatgtcaaacaaaaacacactcaTCTGAATTCACAGAAACATTACATCGTTGGAGGAACACAAACTAAGCACACGACTGAGTTTCCTTGAAAAAAATGAAATCATTTTTTTTCCCTTCACCGTACAGCCTTAAGTTCAAAGCATGAGCTAGCATCATCCTTGTAGTAAAAACAAACCATGACAACATCATTAACGACAACATCAAAATTAAATACTAGCACAAGTCGAGTTAGATGTCGCTAGGACAGAGTGAGCAGGTTACACTCAAGTTCCCTTCTAGATGCACAACAGTGTTTCTCTTTGAACAGTTGGTTTGGGGGGGTCACGCACTGAAACACATGCAGAGGGACAAAAAGAGGTGGTCCGGGTGTCTGCTAAATCAGCAACAATTACAGACATTCAAAAACCTTTGTTCCAAATGAAGCACTTACCCTGGGCTTGAGCCAGTTAATATACAAGTGAAAGTGGAACTGTACATTTAGAGAGAAAGGGAACAAACGTTTATGAACATTACTGCCGCAgactttaaatatatatatatatatatatatttttttacagtttaCGTGTACTGACTGATGAATTTCGAATAATCATGTTCCTGTTGGACCACGTGTGTGCGTGTGGAGAGCAGATCTATTGGAGGACCTGGGACACTGCACAGCAGCCTGTTTTATCAGGAGACTGGGTTGGGTCAGACCATTAACCCATAACAGCTACGCCCACACTGAGCTGCACCTAAGAGTTACTACCAGACTCTGAGACATGCCCTTCCTTCGTCTCCAGGTAAAAATCAGTTTTTCCCAGAACAAATGGCATATGCCAACATTTCTCCCATTTGGAGAGTTTACATCCAACCCAAATACAgtaaaaattttttttaaaaaagaccacaaaataaataaaatagtaaaaaaatggACACAAGCCTGGCTTGGGGATAACTCATTGTGTTCCGTTAGATGTTCACCGTTCTGGCTGGAGGTATGAGTAAGTCAAAAACACTTTCAGTATTAAAGAAGTAACAGTGAGAGCAAGGTACTAGGAGTTTGAACAAACAAAACTGAAATTGAAATGAGTCTCAAACGCATCTTAATTAATGAGAACTACGGCTCATAGGATTGTTTTATAGACATACAGTCTATAAAATGCACACACgcaaacatacactatatatacaaaagtatgtggacaccccttcaaattagtggattcagctatttcagccactgcCGTTGCTGGCAGGTTAATAAAAATtgagcacaaagccatgcaatctccataaacaaacattggaagtagaatggtcttactgaacaGCTCAATGACTttaaacgtggcaccatcataggatgccacctttccaacaagtcagaggaataatggtctggggctgtttttattggttcgggctaggctccttagttccagtgaagggaaatcataatggtacagcatacaatgaaattCTAGCAGATTCTGTGCTTTAACTTTGTGacagcagtttggggaaggccctttcctgtttcagtatgacaatgcccccatgcacaaagcaaggtccatttagaaatggtttgtcgagatcagtgtggaacaacttgactggcctgtacagagccctgacctcaaccccatcgaaaacctttgggatgaattggaacaccgactgcgaggcaggcctaatcgcccaacatcagtgctcaacctcacaaatgttcttgtggctgaatggaagaatgtccccgcagcaatgttccaacatctagtagaaaagccttcccagaagagtgaagtggcggctgttatagcagcaaaggggagaccaactccatattaatgcccatgattttggaatgatatgttcgacaagcaggtgttcacatacttttggtcatgtagtgtacatctaTACACATTCTCAGTCATACACATATGGAAGCTCACACACTCACCCTACATCACCAGACTTGTCTGTTCACCTGTCAGCATAACTTTGCCCTAGATATGCAACATCTTGACATGTAGACTCAATACATACTGGTAATACAAAACTGCAGCTTTGCATCTTCACATTTAACAAAAAACTGAACTCGGCTCAGACGTGAAGTTCTTTGACTAGCAACATGTACCTCTGCTTGCTATACACAGGAAATGGAAAACAAACTACATTCCATTAGCGAAAAGCTACCCTCCCATTAACTACCTACATCTGTAAGAGAAATTAATTGATACTTGTCATTAtaagaaaaaaaaaggaaaaaaaatatatagggtAAATGAAAAAAATCTAACAAGTTCTGGAAGTGAGAAAAACAAGTTTCTGGGTGTGCGAGTGAGAAATAGGACAAATAGGAGAGAGTGTTGAAGGCCGTGATGGCGCTTTTCATTCTCTGGAGGTGGGAAAGCACGACTGCATGCGCTCAGTGGGATGCGATGTGGGCTGGTCCTCAATCAGTCTTACCGC
>TU825324
AGTAATGGGAGTCGACGGACTCCACACCATATAGCAGactgaccaggtgaaagctgtgatccctttgaacggggt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002474497.2 False 3401 mRNA 0.40 2 57140979 57146180
TU825321 False 3326 lncRNA 0.40 2 57139075 57142711
TU825322 False 3326 lncRNA 0.40 2 57139075 57142711
TU825324 True 75 lncRNA 0.52 2 57143130 57145005

Neighbor

gene id symbol gene type direction distance location
LOC110530205 LOC106568875 coding downstream 109305 57008139 ~ 57031674 (-)
LOC110530203 LOC106568877 coding downstream 194189 56896586 ~ 56946790 (-)
bpnt2 impad1 coding downstream 259147 56871201 ~ 56881832 (-)
penka LOC106569009 coding downstream 300832 56828799 ~ 56840147 (-)
LOC110530946 LOC106568881 coding downstream 313290 56813859 ~ 56827689 (-)
LOC110530210 LOC106595335 coding upstream 29691 57175871 ~ 57180428 (-)
chd7 LOC106599585 coding upstream 77878 57224058 ~ 57305576 (-)
LOC110530212 rab2a coding upstream 161235 57307415 ~ 57325324 (-)
LOC110530214 LOC106568870 coding upstream 339061 57485241 ~ 57511592 (-)
si:dkeyp-13a3.10 LOC106568869 coding upstream 369009 57515189 ~ 57532294 (-)
G726521 NA non-coding downstream 10461 57125014 ~ 57130518 (-)
G726453 NA non-coding downstream 118568 57021681 ~ 57022411 (-)
G726429 NA non-coding downstream 150643 56989964 ~ 56990336 (-)
G726430 NA non-coding downstream 151209 56989121 ~ 56989770 (-)
G726404 NA non-coding downstream 188800 56951973 ~ 56952179 (-)
G726598 NA non-coding upstream 148444 57294624 ~ 57361794 (-)
G726625 NA non-coding upstream 219934 57366114 ~ 57366350 (-)
G726639 NA non-coding upstream 249097 57395277 ~ 57395557 (-)
G726644 NA non-coding upstream 261772 57407952 ~ 57408222 (-)
G726653 NA non-coding upstream 273379 57419559 ~ 57419831 (-)
G726496 NA other downstream 3866 57136141 ~ 57137113 (-)
G725280 LOC106568997 other downstream 551708 56588343 ~ 56589271 (-)
LOC110530186 tm56b other downstream 754463 56374588 ~ 56386555 (-)
G725007 LOC106568897 other downstream 908040 56219516 ~ 56232939 (-)
G726885 NA other upstream 659208 57805388 ~ 57811422 (-)
G726900 NA other upstream 673867 57820047 ~ 57846689 (-)
LOC110530228 LOC106569007 other upstream 716558 57858233 ~ 57864165 (-)
G731764 NA other upstream 4898855 62045035 ~ 62048119 (-)

Expression


Co-expression Network