LOC110530210 (LOC106595335)


Basic Information

Item Value
gene id LOC110530210
gene name LOC106595335
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 57175871 ~ 57180428 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021613092.2
CATCAATTGTAGCATAGCAGAGGCGCGCTGTCCTCTAACCTACAGAGTCACATTAGTTGTTGGCATGGGACTCATGATGGCAAACACGCTCAGGTTATTGTTCAAGCAACTGGTTTGGTTTTTAGTTGTGGAAAACTTCTTACTCTCTCCTGCTTTGTCATATACTTATAGCACTGAAACATGGCAACAACTTCCAAGGCGAACACCGCAATTTGACAATCATCCACGCtttaaacagcctccactccaaCAAACAGTTTCAAGGCCAGTTCCAGTAGAAACTGTCGCTGTGACGTGCCATTCAGACTACATGGAGATAGTCGTGAAGGCTGATCTGTTTCAACTCGGTAATCTAATCGATGTGGAGGACCTGCGACTTGGAGTTGAACAGTACCAAGACCAAGAGCCGTGTAGGGCTACAGCTTCAGCAGCCGGAGATGAGTACAGAATATTTGCAGCACTTTCGGACTGTGGAACCAAGTACatgCTGAATGAAGACTCATTGATCTACGCAAACCTCCTCAGATATATACCCAGAACCACACCAGATGGTGTTATTCGAATGGCTGGTGCTGTAATCCCAATTGAGTGTCATTATGAAAGGAAGTACAGTTTAGACAGCTCTTCTCTCCAGCCGACCTGGATCCCTTTCACCGCCACAGTGTCTGCTGAAGACACCCTGCAGTTCTCATTGAAGCTTATGACAAGTGACTGGCTCTATGAGCGGGGTTCTGGAGTTTACTTCCTGGGTGATCTCATCAACATTGAGGCGTCGGTCAGGGTTGCTCACCACACCAGGCTCAGGGTCTTTGTTAGCAGCTGCGTGGCCACACTGGACCCTGATAGCAACTCTGTCCCCAGATATGTCTTCATTGAGAGTGATGGGTGCTTGATGGATTCCCAACTGCCTGGTTCCCGCTCTGGTTTCATGCGTAGAACCCAGGACAACAAGCTCGGGTTCCACATTGATGCCTTTAGGTTCCACCAGGGGGACAGGGCAGAGCTGTACATCACCTGCCACCTTGTGGCAGTCCCTGTCATGGACCATGCAGAGCCTAGCAACAAGGCATGCTCCTTCATTGATGGCAGATGGAGGTCTGCTGATGACAATGATTTGCTATGTGGGCATTGTCCAAGCCTGAGTAGACAGAAGGGGGTTGATCAAGCTCCAGCACAACGTCCCCTCAGTCCAAGACTAGGTGGTAGCCAACTTGAACCTCGTGTCTACCGCAACAAACCCCCAGCCTCTGGTGACAATTGGAGTATTGGGATGAAGGCCAAGAAAGTATGGGACCAGGATACTACTTTGGGCCCCATGATGGTCCTCCCAAGTAAACAGAAGAGTACACCTCTATCTCCACGGACGAGTGGAGGTATCGACATACCTGGCTTCCCTGCCTCAACAGGGGACAGGAAGCCCGTATCACCTGGCAGTCGTTGGCGTGGCATGGACTTCAAGAGAGGACCTTATTTCGCCCAATCCCAAAATGAGGCTAGTCCCTTGGGCCCAAGGGTCGGACCCAACAACAAGCACGGTCTCGTTAGCTCTGCAACATATGATGGCTTCATCAGGCAGAAAGGACTAATCGCCCAAAGAGAGCTGGAGGCCACTCCAGACCCTGAGTTGATTCCTACACCTGAGCCCATTGGAGACCTTGAGGTTACCACAGAGAAAGAGGGTCTGGGTGAAGAGGAGGATCAGTATGAGATTGGAACCTATTGAAAGGTCCACTATCAAATTTCTAGAATTGGAAGGCGCTGTTGTCGTGGTGGCCCTTAATAGACTTGCTCCAAGCAGCAGCACACCAACTCACTGAGGTTGGTGCCGGTCCTGATGTCCCAGCACACAAGGCGGATGACCCTCCAACAAAGTGACATAAGCACCACATCTGCTCCTGGCGAACTCAACCAGTGACTGGACTACCACAACACTGAGAAAATATCTCAAGAGATGCCTGTTAATCtctttgaaaaataaatgatttaatgCTAC
>XM_021613093.2
CATCAATTGTAGCATAGCAGAGGCGCGCTGTCCTCTAACCTACAGAGTCACATTAGTTGTTGGCATGGGACTCATGATGGCAAACACGCTCAGGTTATTGTTCAAGCAACTGGTTTGGTTTTTAGTTGTGGAAAACTTCTTACTCTCTCCTGCTTTGTCATATACTTATAGCACTGAAACATGGCAACAACTTCCAAGGCGAACACCGCAATTTGACAATCATCCACGCtttaaacagcctccactccaaCAAACAGTTTCAAGGCCAGTTCCAGTAGAAACTGTCGCTGTGACGTGCCATTCAGACTACATGGAGATAGTCGTGAAGGCTGATCTGTTTCAACTCGGTAATCTAATCGATGTGGAGGACCTGCGACTTGGAGTTGAACAGTACCAAGACCAAGAGCCGTGTAGGGCTACAGCTTCAGCAGCCGGAGATGAGTACAGAATATTTGCAGCACTTTCGGACTGTGGAACCAAGTACatgCTGAATGAAGACTCATTGATCTACGCAAACCTCCTCAGATATATACCCAGAACCACACCAGATGGTGTTATTCGAATGGCTGGTGCTGTAATCCCAATTGAGTGTCATTATGAAAGGAAGTACAGTTTAGACAGCTCTTCTCTCCAGCCGACCTGGATCCCTTTCACCGCCACAGTGTCTGCTGAAGACACCCTGCAGTTCTCATTGAAGCTTATGACAAGTGACTGGCTCTATGAGCGGGGTTCTGGAGTTTACTTCCTGGGTGATCTCATCAACATTGAGGCGTCGGTCAGGGTTGCTCACCACACCAGGCTCAGGGTCTTTGTTAGCAGCTGCGTGGCCACACTGGACCCTGATAGCAACTCTGTCCCCAGATATGTCTTCATTGAGAGTGATGGGTGCTTGATGGATTCCCAACTGCCTGGTTCCCGCTCTGGTTTCATGCGTAGAACCCAGGACAACAAGCTCGGGTTCCACATTGATGCCTTTAGGTTCCACCAGGGGGACAGGGCAGAGCTGTACATCACCTGCCACCTTGTGGCAGTCCCTGTCATGGACCATGCAGAGCCTAGCAACAAGGCATGCTCCTTCATTGATGGCAGATGGAGGTCTGCTGATGACAATGATTTGCTATGTGGGCATTGTCCAAGCCTGAGTAGACAGAAGGGGGTTGATCAAGCTCCAGCACAACGTCCCCTCAGTCCAAGACTAGGTGGTAGCCAACTTGAACCTCGTGTCTACCGCAACAAACCCCCAGCCTCTGGTGACAATTGGAGTATTGGGATGAAGGCCAAGAAAGTATGGGACCAGGATACTACTTTGGGCCCCATGATGGTCCTCCCAAGTAAACAGAAGAGTACACCTCTATCTCCACGGACGAGTGGAGGTATCGACATACCTGGCTTCCCTGCCTCAACAGGGGACAGGAAGCCCGTATCACCTGGCAGTCGTTGGCGTGGCATGGACTTCAAGAGAGGACCTTATTTCGCCCAATCCCAAAATGAGGCTAGTCCCTTGGGCCCAAGGGTCGGACCCAACAACAAGCACGGTCTCGTTAGCTCTGCAACATATGATGGCTTCATCAGGCAGAAAGGACTAATCGCCCAAAGAGAGCTGGAGGCCACTCCAGACCCTGAGTTGATTCCTACACCTGAGCCCATTGGAGACCTTGAGGTTACCACAGAGAAAGAGGGTCTGGGTGAAGAGGAGGATCAGTATGAGATTGGAACCTATTGAAAGGGGTTATGTTCCCAGTCCACTATCAAATTTCTAGAATTGGAAGGCGCTGTTGTCGTGGTGGCCCTTAATAGACTTGCTCCAAGCAGCAGCACACCAACTCACTGAGGTTGGTGCCGGTCCTGATGTCCCAGCACACAAGGCGGATGACCCTCCAACAAAGTGACATAAGCACCACATCTGCTCCTGGCGAACTCAACCAGTGACTGGACTACCACAACACTGAGAAAATATCTCAAGAGATGCCTGTTAATCtctttgaaaaataaatgatttaatgCTA

Function

NR:

description
zona pellucida sperm-binding protein 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021613092.2 False 1993 mRNA 0.50 11 57175871 57180428
XM_021613093.2 True 2006 mRNA 0.50 11 57175872 57180428

Neighbor

gene id symbol gene type direction distance location
LOC110530209 NA coding downstream 29691 57139075 ~ 57146180 (-)
LOC110530205 LOC106568875 coding downstream 144197 57008139 ~ 57031674 (-)
LOC110530203 LOC106568877 coding downstream 229081 56896586 ~ 56946790 (-)
bpnt2 impad1 coding downstream 294039 56871201 ~ 56881832 (-)
penka LOC106569009 coding downstream 335724 56828799 ~ 56840147 (-)
chd7 LOC106599585 coding upstream 43630 57224058 ~ 57305576 (-)
LOC110530212 rab2a coding upstream 126987 57307415 ~ 57325324 (-)
LOC110530214 LOC106568870 coding upstream 304813 57485241 ~ 57511592 (-)
si:dkeyp-13a3.10 LOC106568869 coding upstream 334761 57515189 ~ 57532294 (-)
LOC110530221 LOC106568860 coding upstream 461350 57641778 ~ 57720685 (-)
G726521 NA non-coding downstream 45353 57125014 ~ 57130518 (-)
G726453 NA non-coding downstream 153460 57021681 ~ 57022411 (-)
G726429 NA non-coding downstream 185535 56989964 ~ 56990336 (-)
G726430 NA non-coding downstream 186101 56989121 ~ 56989770 (-)
G726598 NA non-coding upstream 114196 57294624 ~ 57361794 (-)
G726625 NA non-coding upstream 185686 57366114 ~ 57366350 (-)
G726639 NA non-coding upstream 214849 57395277 ~ 57395557 (-)
G726644 NA non-coding upstream 227524 57407952 ~ 57408222 (-)
G726653 NA non-coding upstream 239131 57419559 ~ 57419831 (-)
G726496 NA other downstream 38758 57136141 ~ 57137113 (-)
G725280 LOC106568997 other downstream 586600 56588343 ~ 56589271 (-)
LOC110530186 tm56b other downstream 789355 56374588 ~ 56386555 (-)
G725007 LOC106568897 other downstream 942932 56219516 ~ 56232939 (-)
G726885 NA other upstream 624960 57805388 ~ 57811422 (-)
G726900 NA other upstream 639619 57820047 ~ 57846689 (-)
LOC110530228 LOC106569007 other upstream 682310 57858233 ~ 57864165 (-)
G731764 NA other upstream 4864607 62045035 ~ 62048119 (-)

Expression


Co-expression Network