LOC110530212 (rab2a)


Basic Information

Item Value
gene id LOC110530212
gene name rab2a
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 57307415 ~ 57325324 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021613096.2
ACTTCCGGTGGCAAAAtaatctttttttctttttttttcttgcgTGCGTGGCGAGGGCGGAACATATGACGTCGTCAGCAGAAGCTTGGAAGTGTTTATTGTTCCTTCCCtttgaagagagaaagaaggctAGCAAGGCAAAGCAATAACGATTACCGAGACGGTTACATAGACAATTTTCATAGTTTCAAGTAGCGAAGCCACAGTAAACGGCCGAGGCAGGTTGACACAGGACCCAGTGGCCATGGCATATGCGTACCTCTTCAAATACATCATTATCGGAGACACGGGTGTTGGGAAATCATGCCTATTATTACAGTTCACAGACAAGCGGTTTCAGCCGGTGCATGACCTCACTATCGGTGTGGAGTTTGGGGCGCGGATGATCACTATAGACGGTAAACAGATCAAGCTGCAGATCTGGGACACGGCCGGCCAAGAATCCTTCCGCTCAATCACTCGGTCCTACTACAGAGGGGCAGCCGGCGCCCTGCTAGTGTACGACATCACAAGAAGGGACACCTTCAACCACTTAACAACCTGGTTAGAGGATGCTCGCCAACATTCCAACTCCAACATGGTCATCATGCTCATTGGGAACAAGAGTGACCTGGAGTCCAGGAGAGAGGtgaagaaggaggagggagaggcctTCGCCAGAGAGCACGGCCTCATCTTCATGGAGACCTCCGCCAAGACTGCATCCAACGTAGAAGAGGCATTCATCAACACAGCGAAGGAGATATACGAGAAGATTCAGGAGGGTGTCTTCGACATCAACAATGAGGCTAACGGTATTAAGATTGGGCCCCAGCACGCTACCACCAACTCCACTCTCTCCGGTAGCCAGGGGGGTCAACAGGCCGGAGGGGGATGCTGCTGAACACCCCTCGCCCCTCTGTCCCATACCACCCCACCTTGCCCCGCCCCTTGTGTTTCTACTGGACTGGTCGGGCTCACTAACATTTTCTTAACCCCTCCCCACAGCCTTGCCAATGGAGAGTCTAATCGTGTACTAGGTGTCTGTCAGTCAAAAATACCAAGCAAAACACATTAAAGTACCCTGGTCCTGGTGCAAAACATGCCCCTGTATAAGAGCATTGGAGCCTGTCTTGGTTGTAGATTGATAGGTTGTTACTGTTGTGTTAAAACAGGCAGGGTGCTTTAGGATTGGGACTCATCATATCTATCTGTACATCTGTCAGACAGTTGTGGATaatgtctctcttttttttcacTCCCAAGTAAGGATTTTTTTGTGCTCTTTTGACTTAAAAGCTTAATTGTATTTAACACTACAATGTTGGTCATCGATAGTATTTTAATCGGTTTCATGTGGGAGAAAGAAAGCTTTGGGGAAGTGGGGTGAACTCGAAGTTTGAAATAAAAGAAACAGCTGTGTCGGAAGTAGCGGCCATGTCTAAAGTGAAGTTAAAAGAAGAAAAGGAAAAAACTCTTTTTAAATCTCTATTTATCAGTCAcattctgtgtgtatatatagttacAGTTATCCTTTCTTGCTTTAGTGTATGTTGACCAAGCTAGAATTCTTTGAATTTGCTGGGAACATCTATACTGTACGAATAGAGCTTGAAACTGCAACagtattgcaaaaaaaaaaaaaaaaccctgctTTGACACCATTTTAAGATCATATTTTACTTAATTTACTTTTTGTCCTGCCACCTGCCTTgccccccccctctatctctgtgcCCTAGATCTGCTATGACTGTGTATAGAAACTTTGGCTCAATATTCTGCATCTATTTTAATGCCAACATTTTGTGTTTACCTGTGTTCAATAACCACAAATACCAGAATTTGATCACCTCTGCTCGGATTAGAGATCTCAGCTGTTTGCCTTAACGGAGAGATTGGGAAAGCAGAAGAAAATGAGAAACATAACCAGGTTGCGGCGGAATCATTCCAGTAACTTCATTTTGCTCATAGACACATTCTTCCATTAAAACACATTGCATACTCTAAATGTATACATACACAGATTTAGACAGTACATGCATGCTTAAATGCATACATGTGTCCTTACACACAAACAACCTGCGTATGTCTATACATACAAGcctgcatatatatattttttctcttcGGGAATTTGTTTTTCATGCAGTCCGCTGTGGAGCGTCGGTGCAGAGCAGCGTTTtcctgtaggtgtgtgtgagtggctgTGTACAGCCTTGCTTTCTTTGACTGTGCGTTCTATTAGTAGATATTATGGTGAACATCTCGTCTGTCGTCAGAGGGGCACGGGAAAAGCCAAACCTGGAGTATCTGTGACCCCCTCTACATTTATTTGCTGTGTTGGTTCTTCTTAAAAATGAAAAAATGCTATCACAATAAACTATAATAAAACATTCTAAGCTTAAATATCATTTGATTGtcatgtgggggaaaaaaaattgCTAtgtttaaaatgtacattttgtaaTTTCCTTTTTAGAATTGATATTTTGCCTCTGATCCCCTAtagttattttctgtgtctgtgttggtaTATGAATGAAACAATTATATATGGATCCATACTGTATTGTAGCTTTGATTTCTCAATATATATAAAGTGAAACACAAAGAATGCA

Function

symbol description
rab2a Predicted to enable GTP binding activity and GTPase activity. Predicted to be active in Golgi membrane. Is expressed in axial mesoderm; nervous system; neural plate; notochord; and solid lens vesicle. Orthologous to human RAB2A (RAB2A, member RAS oncogene family).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07877 RAB2A; Ras-related protein Rab-2A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021613096.2 True 2600 mRNA 0.43 8 57307415 57325324

Neighbor

gene id symbol gene type direction distance location
chd7 LOC106599585 coding downstream 1839 57224058 ~ 57305576 (-)
LOC110530210 LOC106595335 coding downstream 126987 57175871 ~ 57180428 (-)
LOC110530209 NA coding downstream 161235 57139075 ~ 57146180 (-)
LOC110530205 LOC106568875 coding downstream 275741 57008139 ~ 57031674 (-)
LOC110530203 LOC106568877 coding downstream 360625 56896586 ~ 56946790 (-)
LOC110530214 LOC106568870 coding upstream 159917 57485241 ~ 57511592 (-)
si:dkeyp-13a3.10 LOC106568869 coding upstream 189865 57515189 ~ 57532294 (-)
LOC110530221 LOC106568860 coding upstream 316454 57641778 ~ 57720685 (-)
LOC110530224 LOC106568859 coding upstream 476514 57801838 ~ 57803851 (-)
lpar5a LOC106568857 coding upstream 486219 57811543 ~ 57813057 (-)
G726521 NA non-coding downstream 176897 57125014 ~ 57130518 (-)
G726453 NA non-coding downstream 285004 57021681 ~ 57022411 (-)
G726429 NA non-coding downstream 317079 56989964 ~ 56990336 (-)
G726430 NA non-coding downstream 317645 56989121 ~ 56989770 (-)
G726625 NA non-coding upstream 40790 57366114 ~ 57366350 (-)
G726639 NA non-coding upstream 69953 57395277 ~ 57395557 (-)
G726644 NA non-coding upstream 82628 57407952 ~ 57408222 (-)
G726653 NA non-coding upstream 94235 57419559 ~ 57419831 (-)
G726692 NA non-coding upstream 132230 57457554 ~ 57457860 (-)
G726496 NA other downstream 170302 57136141 ~ 57137113 (-)
penka LOC106569009 other downstream 467289 56828799 ~ 56840147 (-)
G725280 LOC106568997 other downstream 718144 56588343 ~ 56589271 (-)
LOC110530186 tm56b other downstream 920899 56374588 ~ 56386555 (-)
G726885 NA other upstream 480064 57805388 ~ 57811422 (-)
G726900 NA other upstream 494723 57820047 ~ 57846689 (-)
LOC110530228 LOC106569007 other upstream 537414 57858233 ~ 57864165 (-)
G731764 NA other upstream 4719711 62045035 ~ 62048119 (-)
LOC110530961 dhx9 other upstream 4855363 62165849 ~ 62185180 (-)

Expression


Co-expression Network