LOC110530224 (LOC106568859)


Basic Information

Item Value
gene id LOC110530224
gene name LOC106568859
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 57801838 ~ 57803851 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021613121.2
CAAGTGCGCTGAACAATCTCTTGCTCGCGCAGTCAGCCCCTCTATTCACATGTAAATGAGGCGTTATAAATACCTACTACTACTGGCACTATCGTTGCGCTTGAGGCTGCATAACAAATCTAGTACCCGTCTGCGCAAAAGTACAGCTCTGCTTTGTTTGCAGCAGGGACCGGCGGCCATCTGTCCCATTTACGGAGTGTAACGGTCGTGTGGATTTACCAAACCTCTGGCAGTGTCTGGGTTAAACATCAACAACATGGCCCCCACTCACAATATCAAAAAAGAACTGAGTAGAGACGAAGATGAATACTATGGCATTAAAGTGGACAGAAAGaTCAGAAAGCCGTTGGTTGAGAAAAAGAGACGGGCTCGCATCAATGAAAGTTTGCAGGAACTCAGAGTTCTTCTCGCAGACACAGATTTACAATCAAAGATGGAGAATGCCGAAGTTCTGGAAATGACTGTAAAACGAGTGGAGAGTATCCTTCAAAACCAAGGACAAGAGGTAGACCCAGTGAACCAGGAGGCGAGTGAAAGGTTCGCTGCTGGCTACATCCAGTGCATGCATGAGGTGCACACCTTCGTGTCCAGCTGCCCGGGAATCGACGCGACTCTCGCGGCGGAGCTCTTGAACCACCTCCTGGAATGTATGCCTCTGAACGACGAGGACAGACTCCAGGTGATGCTCCAGGATATTATGGCGGACTGCTCCACTAATGGCAGCAGCACTTGGCCCAGTTCTGAGGGCATTTACGCAGCACTGGTCTCCCCTGGAGGAAGGAGCATCCCCAGCGAAAGCTCCTCAACCCTCTCCCCAGCGCCCTCCACCACCTCCAGCGATGACCTGTGCTCGgatctggacgagactgactCTGAGCAGAGCCACATCTCTGTGGACGCTGAAAACCAGGATGTTCTGAACATGCCCAGAGTGGCCTATTCCAAGTCCATGTGGAGACCTTGGTAGAGCCAAATTACTGTAGACCTACAACTGTCAGTTACTAGAGGAATAGCCTAAAAAAGTTATTGTATATTGTgttttattctgtatatttgaAGATACAATTCCTTGTAATCTTGTTAGACTGTTGGATGACAGAAGTAGGAATAGCATGAGAAGTGGGACATTATCACTACAATGACTATACTTGGTAATGCAAAGTCTGGTTGCAAGTAGGCTAGAGGTGGCATCATTTTAAAAAGCAATTTTTGTGTCTTAGCCAGAATTCTAGGTTGTACAGATGTAAATATGTATTTGTTGATAGTATGGCTGTATAGAAAGTACCATGTCCTAGTACACCACACTCAGTAATGCCGTGTtgtgtgtaaattattttatttgtgtAGGTTTaatcaaataaatattttatgTTATCTGTAACATTGTAATAACAAATGTTTTTCAGACAAATTGTCATACACTGACGTAGTTAATTTCATTAAATTGATTTTCTCTTCA

Function

NR:

description
transcription cofactor HES-6-like

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0005488 binding molecular_function

KEGG:

id description
K09087 HES2_6_7; hairy and enhancer of split 2/6/7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021613121.2 True 1459 mRNA 0.45 4 57801838 57803851

Neighbor

gene id symbol gene type direction distance location
LOC110530221 LOC106568860 coding downstream 81153 57641778 ~ 57720685 (-)
si:dkeyp-13a3.10 LOC106568869 coding downstream 269544 57515189 ~ 57532294 (-)
LOC110530214 LOC106568870 coding downstream 290246 57485241 ~ 57511592 (-)
LOC110530212 rab2a coding downstream 476514 57307415 ~ 57325324 (-)
chd7 LOC106599585 coding downstream 496262 57224058 ~ 57305576 (-)
lpar5a LOC106568857 coding upstream 7692 57811543 ~ 57813057 (-)
LOC110530228 LOC106569007 coding upstream 54382 57858233 ~ 57864165 (-)
snorc LOC106568856 coding upstream 62313 57866164 ~ 57876385 (-)
LOC110530229 LOC106568854 coding upstream 72946 57876797 ~ 57910140 (-)
trnaw-cca-3 NA coding upstream 117852 57921703 ~ 57921774 (-)
G726819 NA non-coding downstream 79491 57722108 ~ 57722347 (-)
G726801 NA non-coding downstream 123181 57677860 ~ 57678657 (-)
G726800 NA non-coding downstream 123521 57664324 ~ 57678317 (-)
G726781 NA non-coding downstream 173645 57627977 ~ 57628193 (-)
G726665 NA non-coding downstream 185821 57615634 ~ 57616017 (-)
G726890 NA non-coding upstream 45406 57849257 ~ 57849704 (-)
G726915 NA non-coding upstream 52302 57856153 ~ 57856353 (-)
G726921 NA non-coding upstream 65582 57869433 ~ 57870062 (-)
G726496 NA other downstream 664725 57136141 ~ 57137113 (-)
penka LOC106569009 other downstream 961712 56828799 ~ 56840147 (-)
G725280 LOC106568997 other downstream 1212567 56588343 ~ 56589271 (-)
LOC110530186 tm56b other downstream 1415322 56374588 ~ 56386555 (-)
G726885 NA other upstream 1537 57805388 ~ 57811422 (-)
G726900 NA other upstream 16196 57820047 ~ 57846689 (-)
G731764 NA other upstream 4241184 62045035 ~ 62048119 (-)
LOC110530961 dhx9 other upstream 4376836 62165849 ~ 62185180 (-)

Expression


Co-expression Network