LOC110530228 (LOC106569007)


Basic Information

Item Value
gene id LOC110530228
gene name LOC106569007
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 57858233 ~ 57864165 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021613124.2
TGACTTCGTTTGAACATTTCTATAAGAAATAAGCACATTTAAAAAATCAGCGTTAATATATTTTCATATATGTGATAGCAGGATGATACTATGTTCTCAAGTGATTGTTTACATTGTTTGTTGTGGTCTGCTATCTCTTTGTCTTAAGGATGTAACAGActtcacccaatgttctgctgcaTAGAACCCCTATCCAGCTACTGTAGACAACTGAGGCTATGTCACATATAGGAAGTGGTCatgggaagaagaaaaaaacagaacTGTGAAACTACTGTGTCTGGAacggacagacagatagacagactgaTAGACAGACGCACCAGCAGAATGGCATCTATAAGCGACGCCATGGAAACCAACTGCTCCTTCGACGAGGTGGACCACCTGATGACATCACTGGAGCTCGTCATCTACGTGCCCATCTTCGTGTTTGGCCTTATCCTCAACGTCCTCGCCCTGGTTGTCTTCTGCATCTTCCTCCGCAAGTGGAGCGAGTCCACCATCTACATGACCAACCTAGCCCTCATggacctccttctcctcctcctgctccccttCAAGATGCACGCCACCAACCACCAATGGGCGGCCCACCACCGcttcctctgctccctcctggaGAGCCTTTACTTCGTGGGGATGTACGGCAGCATCTATACCATCGCCTGCATTGCTGTGGACCGCTGGGTGGCCATATGCCACCCATTCCGCGCCAAGCAGCTCCGTTCCCCCCGGGCTGCTCTGTGGACCTGCATCCTGGTCTGGGTGGTGGTGCTGGGGAGCATCTCCCCCATCTATGGGTTCCGCAAGGAGGAAACAGGATCCTTCCACTGCTTCCACACGTTCTCAAAGGAGGGCTGGCATCCAAAGGTGATCGGCTGCCTGTTGAGCTTCGGGTTCGTGGGGCCGGCCCTGGTGCTGGTGGTGTGTTCAGCCCAAAGCATCCGGACACTGAGGCAGTCGGGCCAGGAGAGCCCTAAAAGCAGAAGCTGCGTGAAGATCATCTACAGTAGTCTTTGCGCCTTCCTGGTCCCATTCACACCCAGCCACCTGGGCATCCTGCTGCAGTTCCTGGTGCATCAACGCCTGATCGAGGACTGCTTGGCCAAAACAAGGATCAGCTTGTACATTCAGGTGACCATGAGTCTGGCCAACATCACGTGCTGTCTAGACGCTCTGTGTTACTACTTCATCACCACGGAGGTGAGGAGCTCCAAGCAGACCTTCACCTTCAGGAGGTCCATGAGCCAGAAGAGAGCCACCACCAGCACCTCGGAGCTCTGACGAGACCCATGGAGGAAAAAACACTGAGCcaaactggttgaaatgacgtTTTATCCATTTTCGCCCACTGGGAAGTTACTGGCTGTAATCTGACTAGGTTTGTGAGACATTCTGCCACTGTTGGAGGACAAAGGACGTCGACACGGAAAAAGGAGTGTTTATTGTTGAATACCTAGACAACAAGGTAGGTTGAAGGACAACAAGGTATTGTAGGTTGAATAGGAGAAGTCAGTTTGCTTACAATAGGCATTCATGAGCTCTATAAGTCACACAGTACGTGGGCTAAGACATACAGTCAGGTCGAAAGTAATTGGATCCCTTGATATAGATGATCAAAAAAgataaaatcaaataaattatacaaatactgagctgtatTGTATGCTACATTTTAAAGAAAGAAAATCATATTATTTTatgctaatacaattgctcagagaaagagattttgtttaacaagtcattttttttaaatctcaaaaagaatatggatccccatttttCAATAGTCCAGCACCCACCCCTTGCAAGAATAatgacactgagcctttttctgaaatgttttatgagattggagaacacattggaagGGATCTTTGACCACTCCTCTAAACAGAACCTTTCCAGAATATTTCCTTGGTCTGCgtttatggactgccctcttcaatttaAACCACAGGTTtccaatggggttcaagtccagaaACTGAGTTGGCCATaggcaaaatgttgatttttttgGTCagttaaccatttctttgtggactTTGATGTGTTCTTGAGGTTATtatcttgctggaagatccacttgcgtcCAAGTTttagcctcctggcagaggcaaacAGGTCTTTGGCTCAAATGTCCTGGTAATTGGTAAAGTTCATGACGCCATTGACCTTCTTAACAAAGccccccaggaccagtggaatcaaagtagccccataacatcaaagatccaccaccatattttacagtcgAGATGAGGTATTTTGTGGCCATGCACTTCTATTTTCATGTCACCTGATCATAGTTTGCTAAATGCCTTTGGCACTTAGAATGGAACCGGTCATATGACATGttatattttatacagtcttttttgctcagcTTTATTAAGGGATCCAATCATTTTGGACTCCACTGCATGTGGGCTAAGACAGCACGCCACTGGTTTCAACTGCCGTCATGAAGAATAAAATTCCCATTTATCTGCGTATGCAGTATGCTGAATGTTACTGTGGAGGTATGACTAAACATATGtacatcaactatatattatgTTCTGTATTGAATATGGTGTATTATAATTGTATTACATTATTATACGATCATAGTTTTGTCCATGTCTGTAATTAGGGTAAAAGTAGTCTATTTAAAATACGTATGTAGTGTATAGGATGGATACGATTAGGATATGTGATTTAGGAGAATTGGAATGGAATTAACCCCAACCCTGCTACATTGCATGAAAATCCTGGTCATTATTGTTTTAGCTGCGTTCATTTACCCTCTTGTGTAAATTAATGAATGCTTTGTTAGACAACAGTCCAAACAGGAGTACACATTATTAAAGCTGTCTATTCATATAACAGCAACCTATTTTACTGACCGCTAAAATAAGCTTTGTTCGGTCATTAGATTCaatcttttttaaatatttttttttaagtaaacaGTGTTATTTGATCTGTTTTCTAGAAAGAGTTGTTCAAAACAGTCCTTATCAGTGCGTTACATGTACCTTTAACTGGCGTTTTGAAACTGATAGGAGGATGAACAGAAATGTAGACTGCTGTCTGGCTGAACTCTCAGGATCTTGATTTAGTCTGGCTTTGAAGGACATTCGGTTTAAACCGTGAAAAAAGAGAAACCAAATGAAACACTGTGGCAAAGACTTCCGAATAAACCCCTGATCCATTTCCCTTTGAGGCCCGACTAGGCTGGCTACATGAGCCTCTACAATGACTCACTTTCTTGTGACTTACTTTAAACAGAGTCAGAATCTCAGTaatatccatatatatatatataccctacTGTTCAagtgtttggggtcacttggaaatgtccttgtttttgtccattaaaataacatcaaattga
>TU825773
GTATGCTACATTTTAAAGAAAGAAAATCATATTATTTTatgctaatacaattgctcagagaaagagattttgtttaacaagtcattttttttaaatctcaaaaagaatatggatccccatttttCAATAGTCCAGCACCCACCCCTTGCAAGAATAatgacactgagcctttttctgaaatgttttatgagattggagaacacattggaagGGATCTTTGACCACTCCTCTAAACAGAACCTTTCCAGAATATTTCCTTGGTCTGCgtttatggactgccctcttcaatttaAACCACAGGTTtccaatggggttcaagtccagaaACTGAGTTGGCCATaggcaaaatgttgatttttttgGTCagttaaccatttctttgtggactTTGATGTGTTCTTGAGGTTATtatcttgctggaagatccacttgcgtcCAAGTTttagcctcctggcagaggcaaacAGGTCTTTGGCTCAAATGTCCTGGTAATTGGTAAAGTTCATGACGCCATTGACCTTCTTAACAAAGccccccaggaccagtggaatcaaagtagccccataacatcaaagatccaccaccatattttacagtcgAGATGAGGTATTTTGTGGCCATGCACTTCTATTTTCATGTCACCTGATCATAGTTTGCTAAATGCCTTTGGCACTTAGAATGGAACCGGTCATATGACATGttatattttatacagtcttttttgctcagcTTTATTAAGGGATCCAATCATTTTGGACTCCACTGCATGTGGGCTAAGACAGCACGCCACTGGTTTCAACTGCCGTCATGAAGAATAAAATTCCCATTTATCTGCGTATGCAGTATGCTGAATGTTACTGTGGAGGTATGACTAAACATATGtacatcaactatatattatgTTCTGTATTGAATATGGTGTATTATAATTGTATTACATTATTATACGATCATAGTTTTGTCCATGTCTGTAATTAGGGTAAAAGTAGTCTATTTAAAATACGTATGTAGTGTATAGGATGGATACGATTAGGATATGTGATTTAGGAGAATTGGAATGGAATTAACCCCAACCCTGCTACATTGCATGAAAATCCTGGTCATTATTGTTTTAGCTGCGTTCATTTACCCTCTTGTGTAAATTAATGAATGCTTTGTTAGACAACAGTCCAAACAGGAGTACACATTATTAAAGCTGTCTATTCATATAACAGCAACCTATTTTACTGACCGCTAAAATAAGCTTTGTTCGGTCATTAGATTCaatcttttttaaatatttttttttaagtaaacaGTGTTATTTGATCTGTTTTCTAGAAAGAGTTGTTCAAAACAGTCCTTATCAGTGCGTTACATGTACCTTTAACTGGCGTTTTGAAACTGATAGGAGGATGAACAGAAATGTAGACTGCTGTCTGGCTGAACTCTCAGGATCTTGATTTAGTCTGGCTTTGAAGGACATTCGGTTTAAACCGTGAAAAAAGAGAAACCAAATGAAACACTGTGGCAAAGACTTCCGAATAAACCCCTGATCCATTTCCCTTTGAGGCCCGACTAGGCTGGCTACATGAGCCTCTACAATGACTCACTTTCTTGTGACTTACTTTAAACAGAGTCAGAATCTCAGTaatatccatatatatatatataccctacTGTTCAagtgtttggggtcacttggaaatgtccttgtttttgtccattaaaataacatcaaattga
>TU825772
GTATGCTACATTTTAAAGAAAGAAAATCATATTATTTTatgctaatacaattgctcagagaaagagattttgtttaacaagtcattttttttaaatctcaaaaagaatatggatccccatttttCAATAGTCCAGCACCCACCCCTTGCAAGAATAatgacactgagcctttttctgaaatgttttatgagattggagaacacattggaagGGATCTTTGACCACTCCTCTAAACAGAACCTTTCCAGAATATTTCCTTGGTCTGCgtttatggactgccctcttcaatttaAACCACAGGTTtccaatggggttcaagtccagaaACTGAGTTGGCCATaggcaaaatgttgatttttttgGTCagttaaccatttctttgtggactTTGATGTGTTCTTGAGGTTATtatcttgctggaagatccacttgcgtcCAAGTTttagcctcctggcagaggcaaacAGGTCTTTGGCTCAAATGTCCTGGTAATTGGTAAAGTTCATGACGCCATTGACCTTCTTAACAAAGccccccaggaccagtggaatcaaagtagccccataacatcaaagatccaccaccatattttacagtcgAGATGAGGTATTTTGTGGCCATGCACTTCTATTTTCATGTCACCTGATCATAGTTTGCTAAATGCCTTTGGCACTTAGAATGGAACCGGTCATATGACATGttatattttatacagtcttttttgctcagcTTTATTAAGGGATCCAATCATTTTGGACTCCACTGCATGTGGGCTAAGACAGCACGCCACTGGTTTCAACTGCCGTCATGAAGAATAAAATTCCCATTTATCTGCGTATGCAGTATGCTGAATGTTACTGTGGAGGTATGACTAAACATATGtacatcaactatatattatgTTCTGTATTGAATATGGTGTATTATAATTGTATTACATTATTATACGATCATAGTTTTGTCCATGTCTGTAATTAGGGTAAAAGTAGTCTATTTAAAATACGTATGTAGTGTATAGGATGGATACGATTAGGATATGTGATTTAGGAGAATTGGAATGGAATTAACCCCAACCCTGCTACATTGCATGAAAATCCTGGTCATTATTGTTTTAGCTGCGTTCATTTACCCTCTTGTGTAAATTAATGAATGCTTTGTTAGACAACAGTCCAAACAGGAGTACACATTATTAAAGCTGTCTATTCATATAACAGCAACCTATTTTACTGACCGCTAAAATAAGCTTTGTTCGGTCATTAGATTCaatcttttttaaatatttttttttaagtaaacaGTGTTATTTGATCTGTTTTCTAGAAAGAGTTGTTCAAAACAGTCCTTATCAGTGCGTTACATGTACCTTTAACTGGCGTTTTGAAACTGATAGGAGGATGAACAGAAATGTAGACTGCTGTCTGGCTGAACTCTCAGGATCTTGATTTAGTCTGGCTTTGAAGGACATTCGGTTTAAACCGTGAAAAAAGAGAAACCAAATGAAACACTGTGGCAAAGACTTCCGAATAAACCCCTGATCCATTTCCCTTTGAGGCCCGACTAGGCTGGCTACATGAGCCTCTACAATGACTCACTTTCTTGTGACTTACTTTAAACAGAGTCAGAATCTCAGTaatatccatatatatatatataccctacTGTTCAagtgtttggg
>TU825771
gacagacagatagacagactgaTAGACAGACGCACCAGCAGAATGGCATCTATAAGCGACGCCATGGAAACCAACTGCTCCTTCGACGAGGTGGACCACCTGATGACATCACTGGAGCTCGTCATCTACGTGCCCATCTTCGTGTTTGGCCTTATCCTCAACGTCCTCGCCCTGGTTGTCTTCTGCATCTTCCTCCGCAAGTGGAGCGAGTCCACCATCTACATGACCAACCTAGCCCTCATggacctccttctcctcctcctgctccccttCAAGATGCACGCCAC

Function

NR:

description
G-protein coupled receptor 55-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021613124.2 False 3391 mRNA 0.43 3 57858233 57864165
TU825773 False 1725 lncRNA 0.37 1 57858233 57859957
TU825772 False 1675 lncRNA 0.37 1 57858283 57859957
TU825771 True 287 TUCP 0.55 2 57862738 57863877

Neighbor

gene id symbol gene type direction distance location
lpar5a LOC106568857 coding downstream 45176 57811543 ~ 57813057 (-)
LOC110530224 LOC106568859 coding downstream 54382 57801838 ~ 57803851 (-)
LOC110530221 LOC106568860 coding downstream 137548 57641778 ~ 57720685 (-)
si:dkeyp-13a3.10 LOC106568869 coding downstream 325939 57515189 ~ 57532294 (-)
LOC110530214 LOC106568870 coding downstream 346641 57485241 ~ 57511592 (-)
snorc LOC106568856 coding upstream 1999 57866164 ~ 57876385 (-)
LOC110530229 LOC106568854 coding upstream 12632 57876797 ~ 57910140 (-)
trnaw-cca-3 NA coding upstream 57538 57921703 ~ 57921774 (-)
trnav-aac-153 NA coding upstream 59057 57923222 ~ 57923294 (-)
LOC118965534 NA coding upstream 318467 58182632 ~ 58190996 (-)
G726915 NA non-coding downstream 1880 57856153 ~ 57856353 (-)
G726890 NA non-coding downstream 8529 57849257 ~ 57849704 (-)
G726819 NA non-coding downstream 135886 57722108 ~ 57722347 (-)
G726801 NA non-coding downstream 179576 57677860 ~ 57678657 (-)
G726800 NA non-coding downstream 179916 57664324 ~ 57678317 (-)
G726921 NA non-coding upstream 5268 57869433 ~ 57870062 (-)
G726967 NA non-coding upstream 124569 57988734 ~ 58054146 (-)
G727026 NA non-coding upstream 271167 58135332 ~ 58140314 (-)
G726900 NA other downstream 11544 57820047 ~ 57846689 (-)
G726885 NA other downstream 46811 57805388 ~ 57811422 (-)
chd7 LOC106599585 other downstream 552707 57224058 ~ 57305576 (-)
G726496 NA other downstream 721120 57136141 ~ 57137113 (-)
penka LOC106569009 other downstream 1018107 56828799 ~ 56840147 (-)
G731764 NA other upstream 4180870 62045035 ~ 62048119 (-)
LOC110530961 dhx9 other upstream 4316522 62165849 ~ 62185180 (-)
G735880 NA other upstream 7126136 64990301 ~ 65040241 (-)
G736216 NA other upstream 7654002 65518167 ~ 65528583 (-)
G736841 LOC106569214 other upstream 8236931 66101096 ~ 66101627 (-)
LOC110530228 LOC106569007 other upstream 2781 57858233 ~ 57864165 (-)

Expression


Co-expression Network