snorc (LOC106568856)


Basic Information

Item Value
gene id snorc
gene name LOC106568856
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 57866164 ~ 57876385 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021613127.2
TGGGAAGGTGTTGGGATGCCCTCACTAGCCCATGCTTCAGGAGCTCTGGAGACTCCCAGTCCAGTCATCCTCctcacagagacaggaaacatggCCAACTGCAGCAGCGTTTCCAGACTTGTCCTCATGGCCCTCCTCGGCCTCTGGGTAGCCACCCTCCACTCAGAGACTGTGGCAGACCCCACACCCACTTTACAAGGGGACAACCAGGACACGCTGTCCGGAGAGGGGGCGTATGAAGTCACCACCAAAGACCCCTTCCAGGATATGACAGAGAGTGTGTTGACCTTCGAATACGAGGACACCACCCACTCACAGGCCGTGGACGAGGAGGAAAGTGTTCTGGGCCCAGGTGCCATCACAGCCATCGTCATCGCAGTCGTCCTGGGGGCTTCAGTCCTCCTCGCCCTCATTGTCATTACACTCAGGAAGTTCACTGCTTCCTAGAGccacttcctcctctttctttcaatctctctctttcacttcttTGTCACTTCCATTCATCTATCTTTATTGTTTTTCCCCATTCTCTAAATGTTCTCCCATTCCCTCTGTTTCCCTTATACACACATATTGTGAAAGTGAAACCCTCTACAACCCTGGATGCTATAATGGTATGTGGCAGGTCCCTTTTGGCCTTGAAGAGCAACTGACAATGAAATACCTTCAGACTCTAGCTACTATAATCATGCTGTTCTTGTTGGCCCCCATGTCCACTATCACGTTGTCAATTGGAGGCTTAAGTGGGAGTTAGGATTTGCCCCTAAGAGGACATTAGAGACTGGCAggttcttccagtgtgaagtcaTAGCTTTAATAAAATCCCTTTTACTTTACTTGTAATGATCTGTGTgctgaaatgttttgtccagCTTTGATTTGTTCTTGCTGATCTTTGTAGAAGTGATTTTTTTTTCTGACGGTTCTGTTGTGTGTTGCTGTatcctgtctgtctttgtgtatgaACGGGTGTGATGAGTGTGTCATTGTGAAGATGAATCCACCATGTTTATTACGTTGCTGAGTGCCTACTCCATTTGGTTAAAAGTGAAGTGTTATTGACAGTAGAATGAAAAATGAAATGATTTACCAAATGTACAACACAGAATTCACTTGTATGATCAAATGTTATTTTGAATGATCTTATCTCATGAGAGAATATTTTCACAATGCACACAATGTGCTACCTTTCACTGGCAAatagtatttttttaatttaagaaACGTTTGCCATTTTCCATTGGAACAAACACATTGATAGTGACCCAGAACTATAATATTTTAATATGAAAATGCTGGCGTCgtcaataaataaacataaacagggtaatttttgtatttttttgtattttttttacctgcAAAGCAAATATTAACCTTGCCTATTAAACGGCAGAATGactgttgtgtttgtgtttttgggGGGCATTGATGGGAAGCGTTGTATAATATTTAGATTTTCTCTGTTTTACTCTTGCGTTTTACCAATCAACTAACTAATGCTTATGTAAAACAAATATTCTTTAAGGTAATATCACCTGTTTGAACTATGTGTTATATTGTATAAATCACTTCCTACAACCAAA
>TU825760
TTCCCATCACCAGTAAAATAATATTGAAATGTTATTAATATAAAGAATTTGGGTTATACCCAGAGGATTTAGAAAATAGTATATTCTGTAAACATTTGCATGTGAAGAGCCATTGGCCAAAGCTCGCTGGAGGGGTTATTTGTGTCTGTAAATCCACACCACAACCCCTGAATTGGTAATAAACCACACCATTTGTAAAGTATATCGAGACTGTGATGATGCATTTTAAATCAAATTCGACCTTGACTTGACAATCCTGCTTTATACTCGAGTGTCAGGTTGGTGGCCTAACCTCTGACCTTTGCTCgttgtgtgttctctgtgtgccCCTGTATCCAGGTGTTCTGGGCCCAGGTGCCATCACAGCCATCGTCATCGCAGTCGTCCTGGGGGCTTCAGTCCTCCTCGCCCTCATTGTCATTACACTCAGGAAGTTCACTGCTTCCTAGAGccacttcctcctctttctttcaatctctctctttcacttcttTGTCACTTCCATTCATCTATCTTTATTGTTTTTCCCCATTCTCTAAATGTTCTCCCATTCCCTCTGTTTCCCTTATACACACATATTGTGAAAGTGAAACCCTCTACAACCCTGGATGCTATAATGGTATGTGGCAGGTCCCTTTTGGCCTTGAAGAGCAACTGACAATGAAATACCTTCAGACTCTAGCTACTATAATCATGCTGTTCTTGTTGGCCCCCATGTCCACTATCACGTTGTCAATTGGAGGCTTAAGTGGGAGTTAGGATTTGCCCCTAAGAGGACATTAGAGACTGGCAggttcttccagtgtgaagtcaTAGCTTTAATAAAATCCCTTTTACTTTACTTGTAATGATCTGTGTgctgaaatgttttgtccagCTTTGATTTGTTCTTGCTGATCTTTGTAGAAGTGATTTTTTTTTCTGACGGTTCTGTTGTGTGTTGCTGTatcctgtctgtctttgtgtatgaACGGGTGTGATGAGTGTGTCATTGTGAAGATGAATCCACCATGTTTATTACGTTGCTGAGTGCCTACTCCATTTGGTTAAAAGTGAAGTGTTATTGACAGTAGAATGAAAAATGAAATGATTTACCAAATGTACAACACAGAATTCACTTGTATGATCAAATGTTATTTTGAATGATCTTATCTCATGAGAGAATATTTTCACAATGCACACAATGTGCTACCTTTCACTGGCAAatagtatttttttaatttaagaaACGTTTGCCATTTTCCATTGGAACAAACACATTGATAGTGACCCAGAACTATAATATTTTAATATGAAAATGCTGGCGTCgtcaataaataaacataaacagggtaatttttgtatttttttgtattttttttacctgcAAAGCAAATATTAACCTTGCCTATTAAACGGCAGAATGactgttgtgtttgtgtttttgggGGGCATTGATGGGAAGCGTTGTATAATATTTAGATTTTCTCTGTTTTACTCTTGCGTTTTACCAATCAACTAACTAATGCTTATGTAAAACAAATATTCTTTAAGGTAATATCACCTGTTTGAACTATGTGTTATATTGTATAAATCACTTCCTA

Function

NR:

description
PREDICTED: uncharacterized protein C2orf82 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021613127.2 False 1589 mRNA 0.42 4 57866164 57876385
TU825760 True 1583 lncRNA 0.38 1 57866172 57867754

Neighbor

gene id symbol gene type direction distance location
LOC110530228 LOC106569007 coding downstream 1999 57858233 ~ 57864165 (-)
lpar5a LOC106568857 coding downstream 53107 57811543 ~ 57813057 (-)
LOC110530224 LOC106568859 coding downstream 62313 57801838 ~ 57803851 (-)
LOC110530221 LOC106568860 coding downstream 145479 57641778 ~ 57720685 (-)
si:dkeyp-13a3.10 LOC106568869 coding downstream 333870 57515189 ~ 57532294 (-)
LOC110530229 LOC106568854 coding upstream 412 57876797 ~ 57910140 (-)
trnaw-cca-3 NA coding upstream 45318 57921703 ~ 57921774 (-)
trnav-aac-153 NA coding upstream 46837 57923222 ~ 57923294 (-)
LOC118965534 NA coding upstream 306247 58182632 ~ 58190996 (-)
LOC110530234 NA coding upstream 600087 58476472 ~ 58477642 (-)
G726915 NA non-coding downstream 9811 57856153 ~ 57856353 (-)
G726890 NA non-coding downstream 16460 57849257 ~ 57849704 (-)
G726819 NA non-coding downstream 143817 57722108 ~ 57722347 (-)
G726801 NA non-coding downstream 187507 57677860 ~ 57678657 (-)
G726967 NA non-coding upstream 112349 57988734 ~ 58054146 (-)
G727026 NA non-coding upstream 258947 58135332 ~ 58140314 (-)
G727364 NA non-coding upstream 388553 58264938 ~ 58268699 (-)
G727514 NA non-coding upstream 555885 58432270 ~ 58433071 (-)
G726900 NA other downstream 19475 57820047 ~ 57846689 (-)
G726885 NA other downstream 54742 57805388 ~ 57811422 (-)
chd7 LOC106599585 other downstream 560638 57224058 ~ 57305576 (-)
G726496 NA other downstream 729051 57136141 ~ 57137113 (-)
G731764 NA other upstream 4168650 62045035 ~ 62048119 (-)
LOC110530961 dhx9 other upstream 4304302 62165849 ~ 62185180 (-)
G735880 NA other upstream 7113916 64990301 ~ 65040241 (-)
G736216 NA other upstream 7641782 65518167 ~ 65528583 (-)
G736841 LOC106569214 other upstream 8224711 66101096 ~ 66101627 (-)
G726921 NA non-coding upstream 1679 57869433 ~ 57870062 (-)

Expression


Co-expression Network