LOC118965534


Basic Information

Item Value
gene id LOC118965534
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 58182632 ~ 58190996 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005052925.1
CCATGCCAGCATCCAAGAGCACTGAACATCGGTCTGGACTGTGAAATGAATCATTATCTAATGGCAGCAGCATATACCAGAGAGCGTCTAAGTGTCATCTAGGGTCTGTGTCTGCTGTGTATTTAGTTGTATAACGGTGCATTAGGCGCTGTGTTCCCACGAGATGTCTCTTCACATTGAAGCCTCCAGCGTGAAGAGACAGCCCTAGGGTGGCGTTCAACCCTCCCGCTCCTAACAGCGGCTGCGTGTCGTCTGTCAGACGAAAGACGACGGAGACTCTGAGGCCGTCAAATACAATAAGCGCGTGTGTCCGTTAAAAACCGAAGAAACGAGAGCGGACTGGGGGAAAGGTAAAGAAAGGATCGGTGAAAAAAGgacctgagccctaggaccatgcctcaggactacctggcatgatgactccttgctgtccccagtccacctggccgtgctgctgctccagtttcaactgttctgcctgcggctatggaacactgacctgttcaccgaacGTGCTATCTGTCCCAGGCCTGCTcttttaaactctctagagacagcaggagcggtagagatactcttaatgatcggctatgaaaagccaactgacatttactcctgctgacttgctgcacccccgacaactactgtgataattattattttatcatgctggtcatttatgaacatcttggccatgttcctGTTATAAAaatccacccggcacagccagaagaggactggccacccctcatagcctggttcctctctaggttttggtgcttctacacctgcattgcttgctgtttgggggtttaggctgggtttctgtacagcactttgagatatcagctctATAAATAAatccatttgatttgataactggttttcagtttccccctcccccactcagaccactcccagacagtcctagcaaaatccctgcttgagaaatagttttttgctaaaaaaacaaacatttgaatggaaatctattacagtaaggtacttaattgttactcagaaatgatttgattGTGATACAAAgaaatggctgcattgggcctttaaggaGAGACTGtttgaagagagacagaaagtgaaAGGCAAAGATTAAAATAGAATGACCTccggtataaaaaaaaaagttgtaactGACACATGAAAGAACATCTCTTGAAATTTCCATTTGAAGACGTAAATGGTGTCCATTCAGGCAGGTCTATATGCACTAGTTCTGTACTATATGTCTGTCTGAACCTGTTCCTCTCATCCATCACACAGCAGGAACACATGCCCTCCAGTATACTATACCCAGGTTCTTAAATCCTGCCACTGGAGACCCACATTTCTTTATTCATTTACTCTTTTAGCGTCATATTGTCATATTATTCTTGTTACTaggtattgtttgtttgtttttcatttgGAAACTCTTGAAAACGAGATGGTGCATCTCAAGACATTTCATCCTgcaaatgatttaaaaaaaaaaaaaacatttagccAGGTAA
>TU826278
TACAATAAGCGCGTGTGTCCGTTAAAAACCGAAGAAACGAGAGCGGACTGGGGGAAAGgacctgagccctaggaccatgcctcaggactacctggcatgatgactccttgctgtccccagtccacctggccgtgctgctgctccagtttcaactgttctgcctgcggctatggaacactgacctgttcaccgaacGTGCTATCTGTCCCAGGCCTGCTcttttaaactctctagagacagcaggagcggtagagatactcttaatgatcggctatgaaaagccaactgacatttactcctgctgacttgctgcacccccgacaactactgtgataattattattttatcatgctggtcatttatgaacatcttggccatgttcctGTTATAAAaatccacccggcacagccagaagaggactggccacccctcatagcctggttcctctctaggttttggtgcttctacacctgc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005052925.1 False 1511 mRNA 0.44 2 58182632 58190996
TU826278 True 475 lncRNA 0.51 2 58183351 58190704

Neighbor

gene id symbol gene type direction distance location
trnav-aac-153 NA coding downstream 259338 57923222 ~ 57923294 (-)
trnaw-cca-3 NA coding downstream 260858 57921703 ~ 57921774 (-)
LOC110530229 LOC106568854 coding downstream 272492 57876797 ~ 57910140 (-)
snorc LOC106568856 coding downstream 306247 57866164 ~ 57876385 (-)
LOC110530228 LOC106569007 coding downstream 318467 57858233 ~ 57864165 (-)
LOC110530234 NA coding upstream 285476 58476472 ~ 58477642 (-)
LOC110530949 LOC106568846 coding upstream 920127 59111123 ~ 59146231 (-)
LOC110530239 LOC106568843 coding upstream 1023398 59214394 ~ 59248869 (-)
LOC110530238 LOC106568844 coding upstream 1058706 59249702 ~ 59279537 (-)
LOC110530240 LOC106568842 coding upstream 1095659 59286655 ~ 59338189 (-)
G727026 NA non-coding downstream 42318 58135332 ~ 58140314 (-)
G726967 NA non-coding downstream 128486 57988734 ~ 58054146 (-)
G726921 NA non-coding downstream 312570 57869433 ~ 57870062 (-)
G727364 NA non-coding upstream 73942 58264938 ~ 58268699 (-)
G727514 NA non-coding upstream 241274 58432270 ~ 58433071 (-)
G727569 NA non-coding upstream 316413 58507409 ~ 58511274 (-)
G727570 NA non-coding upstream 317841 58508837 ~ 58514799 (-)
G727571 NA non-coding upstream 320881 58511877 ~ 58513910 (-)
G726900 NA other downstream 335943 57820047 ~ 57846689 (-)
G726885 NA other downstream 371210 57805388 ~ 57811422 (-)
chd7 LOC106599585 other downstream 877106 57224058 ~ 57305576 (-)
G726496 NA other downstream 1045519 57136141 ~ 57137113 (-)
G731764 NA other upstream 3854039 62045035 ~ 62048119 (-)
LOC110530961 dhx9 other upstream 3989691 62165849 ~ 62185180 (-)
G735880 NA other upstream 6799305 64990301 ~ 65040241 (-)
G736216 NA other upstream 7327171 65518167 ~ 65528583 (-)
G736841 LOC106569214 other upstream 7910100 66101096 ~ 66101627 (-)

Expression


Co-expression Network