LOC110530234


Basic Information

Item Value
gene id LOC110530234
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 58476472 ~ 58477642 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021613131.2
ACATCGGGTAGCAGCAATTGAGACAGTGGGAGATCATGGAAATGTCGGAGAATATCTATACCAATATTGACAGCATTTTTGAAGGTGACCCCTGTGGCAGAAGGGCAGCAAACAGAGACGAGGATATCAACGAAGATAGCATCATCTTCCAAGACTCAAGAGATGCGGCCGAGGACGATGACACCTGTATGGGCAGACCAGCAGCTAACCCCTCAGGTTCTAAGAGCTTAGGTAGGAGACCCTCCAGAGCTGGTGATGTGTGTTGGGGGCTGCTTTGTGTTCTCCTACTGGCAGGGATCATAAGCCTAGGCTTCTACCGCAATACAGTCATGAATAGTTATAAAGACAACTTGACAAAAGAGAAGAACCAGCTAGAGACCAGCAACAACAACCTgactacagagagagaccagctacagaccagctacaaaaACATGACTAAGAAAAGAAACCAGCTACAGGTCAGTTACAACAAACTGCGCGCAAAGAGTagccagctacagaccagctacaacatcATGACCAAGGAAAGAGatcagctacagaccagctacaacaccgTGAACAAGGAGAGAGACCAACTACAAACCAGTTACAACACCATGAACAAGGAGAGAGACCAACTACAAACCAGTTACAATAACCTTGCTGAGGAAATTGACCAGTTGAAGACGGAGAGAGACTTGCTTCAGAAGAGGTTTTCTGGCCTAAAACGAGCTGGGCCTAAAGGCTGGACGCTGTTTCAGTCCACTTGGTATTACATCTCCTCTGAGGTAAAATCCTGGGATGAGAGCAGACAGGACTGCAatgagagaggagcagacctggtgatcATAAATAGCAAAGAGGAGCAGACATTTCTCACTAATCTGAACAAGAGGATCTGGATTGGCCTgactgacaaagacaaagagGGGACCTGGAAATGGGTGGATGGTACTCCACTGACCACAAGCTACTGGATGGGAAAAAATCCTGATAACAAAATGGAGGAAGATTGTGCTGAGATCAGCATTGGACCGGTAGAAGGGAACTGGGATGATTTTTCATGTGCCACTCATCTCAACAGGATCTGTGAGCAGAAGCATTAACTTTGTATTGTAAACTGGTTGGAGAACTACACttgtatgctctctctctgtctctgtctctgtctctgtctctgtctctc

Function

NR:

description
C-type lectin domain family 4 member M-like

GO: NA

KEGG:

id description
K06563 CLEC4M, DC-SIGN2, CD209, CD299; C-type lectin domain family 4 member M

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021613131.2 True 1171 mRNA 0.47 1 58476472 58477642

Neighbor

gene id symbol gene type direction distance location
LOC118965534 NA coding downstream 285476 58182632 ~ 58190996 (-)
trnav-aac-153 NA coding downstream 553178 57923222 ~ 57923294 (-)
trnaw-cca-3 NA coding downstream 554698 57921703 ~ 57921774 (-)
LOC110530229 LOC106568854 coding downstream 566332 57876797 ~ 57910140 (-)
snorc LOC106568856 coding downstream 600087 57866164 ~ 57876385 (-)
LOC110530949 LOC106568846 coding upstream 633481 59111123 ~ 59146231 (-)
LOC110530239 LOC106568843 coding upstream 736752 59214394 ~ 59248869 (-)
LOC110530238 LOC106568844 coding upstream 772060 59249702 ~ 59279537 (-)
LOC110530240 LOC106568842 coding upstream 809013 59286655 ~ 59338189 (-)
LOC110530242 LOC106568841 coding upstream 938766 59416408 ~ 59668443 (-)
G727514 NA non-coding downstream 43401 58432270 ~ 58433071 (-)
G727364 NA non-coding downstream 207773 58264938 ~ 58268699 (-)
G727026 NA non-coding downstream 336158 58135332 ~ 58140314 (-)
G726967 NA non-coding downstream 422326 57988734 ~ 58054146 (-)
G727569 NA non-coding upstream 29767 58507409 ~ 58511274 (-)
G727570 NA non-coding upstream 31195 58508837 ~ 58514799 (-)
G727571 NA non-coding upstream 34235 58511877 ~ 58513910 (-)
G727649 NA non-coding upstream 162254 58639896 ~ 58640233 (-)
G727888 NA non-coding upstream 367418 58845060 ~ 58845340 (-)
LOC110530228 LOC106569007 other downstream 612595 57858233 ~ 57864165 (-)
G726900 NA other downstream 629783 57820047 ~ 57846689 (-)
G726885 NA other downstream 665050 57805388 ~ 57811422 (-)
chd7 LOC106599585 other downstream 1170946 57224058 ~ 57305576 (-)
G726496 NA other downstream 1339359 57136141 ~ 57137113 (-)
G731764 NA other upstream 3567393 62045035 ~ 62048119 (-)
LOC110530961 dhx9 other upstream 3703045 62165849 ~ 62185180 (-)
G735880 NA other upstream 6512659 64990301 ~ 65040241 (-)
G736216 NA other upstream 7040525 65518167 ~ 65528583 (-)
G736841 LOC106569214 other upstream 7623454 66101096 ~ 66101627 (-)

Expression


Co-expression Network