LOC110530238 (LOC106568844)


Basic Information

Item Value
gene id LOC110530238
gene name LOC106568844
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 59249702 ~ 59279537 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021613136.2
GGGCGGTCCTAGATAAGAATAAGTGACTGTAATTCGTCGTCCACTTTGTTGAAGGAAAAAATATTTCGCCCTAGACTGAGGATCTATTGTAACGTGTTCGGGCGAGCTGCCCCTAGTAAAATAATTTACATCCCGCTTTTCCTCgacttttttttgtattttgaacGGGGCAAGCATAATTTTTAACGGATAAGGCACATCACTGACACTTTGCAGTATTTCCTTCCGTGAATAACAGTTTTTTTTCTTTAGAAAAAGCGCACGGGATACTTCTTTTTCTCAGTAAATGCTGCTCTGAAATtataaacaaagacaaaaacacgAGTCAAGATGGATGTGAAGCTACTTTCTATAGCAACATTATTAGGAATCCTATGTTTCTGCAGTGCACAGCAAGAGGGCAGTGATTGCATCAAGGCAAATGCACAATCATGTGGGGAATGCATCCAGGTGGCAGAGAAATGTGGATGGTGTACAGACGCTGACTTCCTGAAGCAGGGAGAGTCTAAGTCAGCTCGCTGTGATGAGCTGAAGTCCCTGATCACGAAGGGCTGCAGTAAGGCCAAGATCGAGAACCCCCGGGGCAGTATCTCCATTGACAAGGACAAGCCCGTCACCAACCGCAAGAAGGAGGTGGCCGAGAAGCTGAAGCCTGACCAGATCACTCAGATCCAGCCCCAGaaactcagtctcaacctccGATCTGGTGAGGCCCAGACATTTAAGCTGAAGTTCAAGCGGGCAGAGGACTACCCCATCGACCTCTACTACTTGAtggacctctctttctccatgaaAGACGATTTGGAGAACGTCAAGAACCTGGGGACTGACCTGATGCGTGAGATGCAGGAGATCACGTCAGACTTCAGGATTGGTTTCGGCTCATTTGTGGAGAAGACTGTGATGCCCTACATCAGCACCACCCCAGCCAGGTTGTTGAACCCCTGCACGAGCAATGAGAACTGCACCAGCCCTTTCAGCTATAAGAACGTGCTCAAGTTGACCGAGAATGGGCAGCAGTTCAACAGCCTGGTCAGCAAGCAGCAGATCTCTGGAAACCTGGACTCCCCTGAGGGAGGCTTTGATGCCATCATGCAGGTGGCGGTCTGTGGGGATGCCATTGGCTGGAGGAACGTCACTCGTCTGCTGGTGTTCTCCACTGACGCTGGGTTCCACTTTGCTGGAGACGGCAAACTGGGCGGCATCGTTCTGCCCAACGATGGAAAGTGTCATCTGGAAAACAACATGTACACCATGAGCCATTACTACGACTATCCCTCCATTGCCCATTTGGTCCAGAAACTGAGCGACAACAACATTCAGACAATTTTTGCAGTTACTGAGGAATTCCAGCCGGTTTACAAGGAACTGAAGAATCTCATCCCCAAGTCAGCAGTAGGAACCCTGTCCTCCAACTCCAGCAACGTCATCAAGCTCATTATCGATTCTTACAATTCTCtttcatctgaagtcattctggAGAACAACAAGGTGCCTGAAGGTGTGTCCATAAAATACAAGTCCATCTGCAAGAATGGTGTGGTTGGTACGGGAGAGAACGGAAGAAAATGCTCTAACATCTCCATTGGAGATGAGGTGTCCTTTGACATTACCATCGAGTCCCAGAAGTGTCCATCTCAAGGAAAGTCAGAGACCATTAGGATCAAGCCGCTGGGTTTCAATGAGGATGTGGAGATCGTCCTCAACTTCATCTGCGAATGTGAATGTTCCAAAGGCGGAGAACCTCTCAGCAAGATCTGCCACAATGGCAACGGGACCTTTGAGTGTGGAGCCTGCAGGTGCAACGAAGGACGTATCGGCAGACTGTGTGAGTGCAGCACAGACGAGGTGAGGACAGACGACCTGGACGGTAACTGTCGGAAGGACAACGGTACAGACATCTGCAGCAACAAcggagactgtgtgtgtggaacTTGTGAGTGTAAGAAGAGGGAGAACCCAGAGGAACGGTACAGCGGGAAATTCTGCGACTGTGACAACTTCAACTGTGACCGCTCCAACAACAAACTCTGTGGAGgaCATGGGCGTTGTGAGTGCAGGGTGTGTATCTGCGATGCCAACTACACAGGCAGCGCCTGCGACTGTTCCCTGGACACCTCCACCTGCCTGGCAGCCAACAAGCAGATATGTAATGGCCGGGGCACCTGCGAGTGTGGCGTCTGCAAATGCACCAACCCCAAGTTCCAGGGCCCCACCTGTGAGATCTGCCCCACCTGCCCCGGAGTCTGCGCTGAGCACAAGGAGTGTGTTCAGTGCCGGGCCTTTGAGACTGGAGAGAAGAAGGACACGTGTCAGAGGGACTGCAGCTATTTCAACCTGATCAGAGTGAAGGATCGGGACAAGCTGCCCCAGCCAGCCGACCAATCCTACCCCCTATCCCACTGTAAGGAGAGGGACGCCAACGACTGTTGGTTCTACTACACCTACGCCGTCAGGAACGACACAATGAGGGAGGTCTACGTGGTCGAGACTCTGGAGTGCCCAGCGGGCCCTGACATCATCCCCATCGTGGCTGGCGTGGTGGCGGGCATTGTGCTCATTGGCCTGGCCCTACTGCTCATCTGGAAGCTGCTCATGATCATCCACGACCGCAGAGAGTTCGCCAAGTTCGAGAAGGAGAAGATGAACGCCAAATGGGACACGGGTGAGAATCCCATCTACAAGAGTGCTGTAACAACTGTTGTCAATCCAAAATACGAGGGCAAATGATGGAGAATCCTCTCtgtcattacaacactgtatgcaAAATAATATTGTGGGGGGTTTATGTTCATGGTTTGTTTTTGTAGTCACCAAATAATAGCAGTGCATTTTGCCACTATTTCAGTATGTTTTACTAACCGTTTTTTTCTATGCATCAtttgaattgaaaaattgtacAGTATGTATAAACTTTGGTTTTTACTTTTTTGTGGAACTTGGCCGAATGTTTAAACTGATTTTATTTTTGCCACAGGACTGGTAAGGTCATTGAAGGTGTGGTTGTGCCTTTCATAGAACCGTGGAGCCATTATTTCTGTTTTTGAGGGTGAAATTGGATGTCGATATGGGACAAGATACGTAGCGATAGCTGGCCATTAGGACAGCAGTAAATTGTAATGTGTACAGTTTGTAGGAAATTCTGTGTAAAGCCATATTTTAGTCACAGAAAGGGGCTGGAAGCAAAGGTATGTTAATCAATTTATTATTCAACCTGAACAATCAATTTAAATGTTAATTTTTTAAAGATAGTCATGATATTTGTAAATCTTTATAAAATAAAATGACATTAATGTACATTAGTAGTATTATGGGCTCCAGGTTTAAATTGTTTAGTTTTAAAGAACTCAGGTCCCTATTAAACTCTTAATAGCGATGCCAAATATTACAGAACTCACTGCCTTGTTTGCAAACAATGCCTTATTTTTAAGTGTCTTGCTTCAGTTACAGAAATTGAGTTCTGAATGGGGTTCTGAATGGTTTATTACTTGACCTGTATCCTCAGCGTGTTTTTATTTTACTGTTGAATAATTATCTTCTAATTAGATGGTTTAATCAAACTCTTCCATTGAATAATGGTGACTACATTTCAGTTATAAAGATCAGTGTTAAGGGAGTGACGTCATTCAGATCTTTGTAGAATTTCAAACATCCCACTTAGTTGTAAGAACACAGTTTTTAAAGTGCCTTTTTATTTCATCACGTTCACATTTTGCATTACTTTATTTCTGAAATTATTTATTAAAGTTCCAAAACAAATTACCCCAAAATTGTT
>XM_021613135.2
TGTGGGCGGTCCTAGATAAGAATAAGTGACTGTAATTCGTCGTCCACTTTGTTGAAGGAAAAAATATTTCGCCCTAGACTGAGGATCTATTGTAACGTGTTCGGGCGAGCTGCCCCTAGTAAAATAATTTACATCCCGCTTTTCCTCgacttttttttgtattttgaacGGGGCAAGCATAATTTTTAACGGATAAGGCACATCACTGACACTTTGCAGTATTTCCTTCCGTGAATAACAGTTTTTTTTCTTTAGAAAAAGCGCACGGGATACTTCTTTTTCTCAGTAAATGCTGCTCTGAAATtataaacaaagacaaaaacacgAGTCAAGATGGATGTGAAGCTACTTTCTATAGCAACATTATTAGGAATCCTATGTTTCTGCAGTGCACAGCAAGAGGGCAGTGATTGCATCAAGGCAAATGCACAATCATGTGGGGAATGCATCCAGGTGGCAGAGAAATGTGGATGGTGTACAGACGCTGACTTCCTGAAGCAGGGAGAGTCTAAGTCAGCTCGCTGTGATGAGCTGAAGTCCCTGATCACGAAGGGCTGCAGTAAGGCCAAGATCGAGAACCCCCGGGGCAGTATCTCCATTGACAAGGACAAGCCCGTCACCAACCGCAAGAAGGAGGTGGCCGAGAAGCTGAAGCCTGACCAGATCACTCAGATCCAGCCCCAGaaactcagtctcaacctccGATCTGGTGAGGCCCAGACATTTAAGCTGAAGTTCAAGCGGGCAGAGGACTACCCCATCGACCTCTACTACTTGAtggacctctctttctccatgaaAGACGATTTGGAGAACGTCAAGAACCTGGGGACTGACCTGATGCGTGAGATGCAGGAGATCACGTCAGACTTCAGGATTGGTTTCGGCTCATTTGTGGAGAAGACTGTGATGCCCTACATCAGCACCACCCCAGCCAGGTTGTTGAACCCCTGCACGAGCAATGAGAACTGCACCAGCCCTTTCAGCTATAAGAACGTGCTCAAGTTGACCGAGAATGGGCAGCAGTTCAACAGCCTGGTCAGCAAGCAGCAGATCTCTGGAAACCTGGACTCCCCTGAGGGAGGCTTTGATGCCATCATGCAGGTGGCGGTCTGTGGGGATGCCATTGGCTGGAGGAACGTCACTCGTCTGCTGGTGTTCTCCACTGACGCTGGGTTCCACTTTGCTGGAGACGGCAAACTGGGCGGCATCGTTCTGCCCAACGATGGAAAGTGTCATCTGGAAAACAACATGTACACCATGAGCCATTACTACGACTATCCCTCCATTGCCCATTTGGTCCAGAAACTGAGCGACAACAACATTCAGACAATTTTTGCAGTTACTGAGGAATTCCAGCCGGTTTACAAGGAACTGAAGAATCTCATCCCCAAGTCAGCAGTAGGAACCCTGTCCTCCAACTCCAGCAACGTCATCAAGCTCATTATCGATTCTTACAATTCTCtttcatctgaagtcattctggAGAACAACAAGGTGCCTGAAGGTGTGTCCATAAAATACAAGTCCATCTGCAAGAATGGTGTGGTTGGTACGGGAGAGAACGGAAGAAAATGCTCTAACATCTCCATTGGAGATGAGGTGTCCTTTGACATTACCATCGAGTCCCAGAAGTGTCCATCTCAAGGAAAGTCAGAGACCATTAGGATCAAGCCGCTGGGTTTCAATGAGGATGTGGAGATCGTCCTCAACTTCATCTGCGAATGTGAATGTTCCAAAGGCGGAGAACCTCTCAGCAAGATCTGCCACAATGGCAACGGGACCTTTGAGTGTGGAGCCTGCAGGTGCAACGAAGGACGTATCGGCAGACTGTGTGAGTGCAGCACAGACGAGGTGAGGACAGACGACCTGGACGGTAACTGTCGGAAGGACAACGGTACAGACATCTGCAGCAACAAcggagactgtgtgtgtggaacTTGTGAGTGTAAGAAGAGGGAGAACCCAGAGGAACGGTACAGCGGGAAATTCTGCGACTGTGACAACTTCAACTGTGACCGCTCCAACAACAAACTCTGTGGAGgaCATGGGCGTTGTGAGTGCAGGGTGTGTATCTGCGATGCCAACTACACAGGCAGCGCCTGCGACTGTTCCCTGGACACCTCCACCTGCCTGGCAGCCAACAAGCAGATATGTAATGGCCGGGGCACCTGCGAGTGTGGCGTCTGCAAATGCACCAACCCCAAGTTCCAGGGCCCCACCTGTGAGATCTGCCCCACCTGCCCCGGAGTCTGCGCTGAGCACAAGGAGTGTGTTCAGTGCCGGGCCTTTGAGACTGGAGAGAAGAAGGACACGTGTCAGAGGGACTGCAGCTATTTCAACCTGATCAGAGTGAAGGATCGGGACAAGCTGCCCCAGCCAGCCGACCAATCCTACCCCCTATCCCACTGTAAGGAGAGGGACGCCAACGACTGTTGGTTCTACTACACCTACGCCGTCAGGAACGACACAATGAGGGAGGTCTACGTGGTCGAGACTCTGGAGTGCCCAGCGGGCCCTGACATCATCCCCATCGTGGCTGGCGTGGTGGCGGGCATTGTGCTCATTGGCCTGGCCCTACTGCTCATCTGGAAGCTGCTCATGATCATCCACGACCGCAGAGAGTTCGCCAAGTTCGAGAAGGAGAAGATGAACGCCAAATGGGACACGCAAGAGAATCCTATATACAAGAGCCCTATAAATAAGTTCCAGAATCCAAGCTATGGGCGTAAAGGCGTGGTCCTATAAGTTTACGGTGAGAATCCCATCTACAAGAGTGCTGTAACAACTGTTGTCAATCCAAAATACGAGGGCAAATGATGGAGAATCCTCTCtgtcattacaacactgtatgcaAAATAATATTGTGGGGGGTTTATGTTCATGGTTTGTTTTTGTAGTCACCAAATAATAGCAGTGCATTTTGCCACTATTTCAGTATGTTTTACTAACCGTTTTTTTCTATGCATCAtttgaattgaaaaattgtacAGTATGTATAAACTTTGGTTTTTACTTTTTTGTGGAACTTGGCCGAATGTTTAAACTGATTTTATTTTTGCCACAGGACTGGTAAGGTCATTGAAGGTGTGGTTGTGCCTTTCATAGAACCGTGGAGCCATTATTTCTGTTTTTGAGGGTGAAATTGGATGTCGATATGGGACAAGATACGTAGCGATAGCTGGCCATTAGGACAGCAGTAAATTGTAATGTGTACAGTTTGTAGGAAATTCTGTGTAAAGCCATATTTTAGTCACAGAAAGGGGCTGGAAGCAAAGGTATGTTAATCAATTTATTATTCAACCTGAACAATCAATTTAAATGTTAATTTTTTAAAGATAGTCATGATATTTGTAAATCTTTATAAAATAAAATGACATTAATGTACATTAGTAGTATTATGGGCTCCAGGTTTAAATTGTTTAGTTTTAAAGAACTCAGGTCCCTATTAAACTCTTAATAGCGATGCCAAATATTACAGAACTCACTGCCTTGTTTGCAAACAATGCCTTATTTTTAAGTGTCTTGCTTCAGTTACAGAAATTGAGTTCTGAATGGGGTTCTGAATGGTTTATTACTTGACCTGTATCCTCAGCGTGTTTTTATTTTACTGTTGAATAATTATCTTCTAATTAGATGGTTTAATCAAACTCTTCCATTGAATAATGGTGACTACATTTCAGTTATAAAGATCAGTGTTAAGGGAGTGACGTCATTCAGATCTTTGTAGAATTTCAAACATCCCACTTAGTTGTAAGAACACAGTTTTTAAAGTGCCTTTTTATTTCATCACGTTCACATTTTGCATTACTTTATTTCTGAAATTATTTATTAAAGTTCCAAAACAAATTACCCCAAAATTGTT

Function

NR:

description
integrin beta-1-like isoform X1

GO: NA

KEGG:

id description
K05719 ITGB1, CD29; integrin beta 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021613136.2 False 3778 mRNA 0.46 15 59249702 59279534
XM_021613135.2 True 3865 mRNA 0.46 16 59249702 59279537

Neighbor

gene id symbol gene type direction distance location
LOC110530239 LOC106568843 coding downstream 833 59214394 ~ 59248869 (-)
LOC110530949 LOC106568846 coding downstream 103471 59111123 ~ 59146231 (-)
LOC110530234 NA coding downstream 772060 58476472 ~ 58477642 (-)
LOC118965534 NA coding downstream 1058706 58182632 ~ 58190996 (-)
trnav-aac-153 NA coding downstream 1326408 57923222 ~ 57923294 (-)
LOC110530240 LOC106568842 coding upstream 7118 59286655 ~ 59338189 (-)
LOC110530242 LOC106568841 coding upstream 136871 59416408 ~ 59668443 (-)
LOC110513039 LOC106568836 coding upstream 396225 59675762 ~ 59679618 (-)
LOC110530245 LOC106568836 coding upstream 403398 59682935 ~ 59686780 (-)
LOC110518577 LOC106568836 coding upstream 410579 59690116 ~ 59693965 (-)
G728725 NA non-coding downstream 64077 59185321 ~ 59185625 (-)
G728712 NA non-coding downstream 81977 59163383 ~ 59167725 (-)
G728711 NA non-coding downstream 83973 59162558 ~ 59165729 (-)
G728226 NA non-coding downstream 142306 59107116 ~ 59107396 (-)
G728749 NA non-coding upstream 1462 59280999 ~ 59281213 (-)
G728753 NA non-coding upstream 10981 59290518 ~ 59290850 (-)
G728754 NA non-coding upstream 14875 59294412 ~ 59294648 (-)
G728755 NA non-coding upstream 18056 59297593 ~ 59297863 (-)
LOC110530228 LOC106569007 other downstream 1385825 57858233 ~ 57864165 (-)
G726900 NA other downstream 1403013 57820047 ~ 57846689 (-)
G726885 NA other downstream 1438280 57805388 ~ 57811422 (-)
chd7 LOC106599585 other downstream 1944176 57224058 ~ 57305576 (-)
G726496 NA other downstream 2112589 57136141 ~ 57137113 (-)
G731764 NA other upstream 2765498 62045035 ~ 62048119 (-)
LOC110530961 dhx9 other upstream 2901150 62165849 ~ 62185180 (-)
G735880 NA other upstream 5710764 64990301 ~ 65040241 (-)
G736216 NA other upstream 6238630 65518167 ~ 65528583 (-)
G736841 LOC106569214 other upstream 6821559 66101096 ~ 66101627 (-)

Expression


Co-expression Network