LOC110518577 (LOC106568836)


Basic Information

Item Value
gene id LOC110518577
gene name LOC106568836
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 59690116 ~ 59693965 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036985819.1
atgataaaagcttgatgattagttgattatttgaccggttaaaggatgagagagggaggggtctgaCTGGATGGGTCCTTAAAAAAGGAGAGCAGGAAGCAGTAGAACTCAACTCACAAACAGAGCGCTGACATGACCAGACTACAGGAGACTATCACCATGGCGACGTTGACCCTTCTACTGCTTCTCAGCGCTGCCTTTACACTGGGTGACAGAATGACTTTGAACATAGCAAATGATTTGGTGAGATTTGCAGCAGACCAAAGAAACCCATGCCCCAGAGGCTGGTTCCAATTTAATTCACGCTGCTTCATGTTTGTCAAAACTGCAAGGACATGGCCCAATGCAGAGCGCCACTGTCAGTTACTTGGAGAAAAACTGAAGCCTGTGTACAACACTGTAAAGTACCTTGGCGCAAACCTGGCATCTGTGCACAGCTATGAAGAGTTCCAATTTCTACAGGCGGTGGTGTTGGTCGCGACTGGCAGTTTCCCTCTTACCTGGATTGGTGGATTTGATGCTGTTCAAGCAAAGGTGGAAAAGGACAGGCTATGGTTCTGGAGTGACGGCTCCAAATTTGATCACGAGAGCTGGGCTGAAGGGGAGCCGAATAACCGCAATGGTGCCAGAGAGCCATGTATTCAGATCAACTTTGGCGCTGAAAACGGCTGGAACGATGAATCATGTGGAAAGAGCTATCCCTCCGTGTGCTCCATAAGAACCTGTTTAATCCTTCAAACTGTCAATTGAAACCAAAAATGCTACTCTGGTGTCAGCATCCTAACTGCAAATGTTTCATGTTATAGTGAATTACTTTGAAGGTATTTGTTGCTGTAAAATACGTTTGACTTGTTGTGTAACTATTGTAGCTTGTCAATAAAACTGGTGTA

Function

NR:

description
ladderlectin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036985819.1 True 890 mRNA 0.45 6 59690116 59693965

Neighbor

gene id symbol gene type direction distance location
LOC110530245 LOC106568836 coding downstream 3336 59682935 ~ 59686780 (-)
LOC110513039 LOC106568836 coding downstream 10498 59675762 ~ 59679618 (-)
LOC110530242 LOC106568841 coding downstream 21673 59416408 ~ 59668443 (-)
LOC110530240 LOC106568842 coding downstream 351927 59286655 ~ 59338189 (-)
LOC110530238 LOC106568844 coding downstream 410579 59249702 ~ 59279537 (-)
LOC118965535 LOC106568836 coding upstream 3272 59697237 ~ 59701083 (-)
LOC110530246 LOC106568836 coding upstream 10380 59704345 ~ 59708192 (-)
LOC118965536 LOC106568836 coding upstream 17537 59711502 ~ 59715308 (-)
LOC118965537 LOC106568836 coding upstream 24653 59718618 ~ 59720310 (-)
LOC110530244 LOC106568836 coding upstream 31460 59725425 ~ 59727118 (-)
G728960 NA non-coding downstream 26742 59663172 ~ 59663374 (-)
G728955 NA non-coding downstream 34778 59655113 ~ 59655338 (-)
G728954 NA non-coding downstream 35207 59654683 ~ 59654909 (-)
G728953 NA non-coding downstream 35766 59654106 ~ 59654350 (-)
G728929 NA non-coding downstream 92214 59597694 ~ 59597902 (-)
G728969 NA non-coding upstream 9325 59703290 ~ 59710991 (-)
G728977 NA non-coding upstream 22524 59716489 ~ 59724668 (-)
G729000 NA non-coding upstream 73714 59767679 ~ 59768045 (-)
G729004 NA non-coding upstream 79879 59773844 ~ 59774151 (-)
LOC110530228 LOC106569007 other downstream 1826239 57858233 ~ 57864165 (-)
G726900 NA other downstream 1843427 57820047 ~ 57846689 (-)
G726885 NA other downstream 1878694 57805388 ~ 57811422 (-)
chd7 LOC106599585 other downstream 2384590 57224058 ~ 57305576 (-)
G726496 NA other downstream 2553003 57136141 ~ 57137113 (-)
G731764 NA other upstream 2351070 62045035 ~ 62048119 (-)
LOC110530961 dhx9 other upstream 2486722 62165849 ~ 62185180 (-)
G735880 NA other upstream 5296336 64990301 ~ 65040241 (-)
G736216 NA other upstream 5824202 65518167 ~ 65528583 (-)
G736841 LOC106569214 other upstream 6407131 66101096 ~ 66101627 (-)

Expression


Co-expression Network