LOC118965535 (LOC106568836)


Basic Information

Item Value
gene id LOC118965535
gene name LOC106568836
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 59697237 ~ 59701083 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036985820.1
aatgataaaagcttgatgattagttgattatttgaccggttaaaggatgagagagggaggggtctgaCTGGATGGGTCCTTAAAAAAGGAGAGCAGGAAGCAGTAGAACTCAACTCACAAACAGAGCGCTGACATGACCAGACTACAGGAGACTATCACCATGGCGACGTTGACCCTTCTACTGCTTCTCAGCGCTGCCTTTACACTGGGTGACAGAATGACTTTGAACATAGCAAATGATTTGGTGAGATTTGCAGCAGACCAAAGAAACCCATGCCCCAGAGGCTGGTTCCAATTTAATTCACGCTGCTTCATGTTTGTCAAAACTGCAAGGACATGGCCCAATGCAGAGCGCCACTGTCAGTTACTTGGAGAAAAACTGAAGCCTGTGTACAACACTGTAAAGTACCTTGGCGCAAACCTGGCATCTGTGCACAGCTATGAAGAGTTCCAATTTCTACAGGCGGTGGTGTTGGTCGCGACTGGCAGTTTCCCTCTTACCTGGATTGGTGGATTTGATGCTGTTCAAGCAAAGGTGGAAAAGGACAGGCTATGGTTCTGGAGTGACGGCTCCAAATTTGATCACGAGAGCTGGGCTGAAGGGGAGCCGAATAACCGCAATGGTGCCAGAGAGCCATGTATTCAGATCAACTTTGGCGCTGAAAACGGCTGGAACGATGAATCATGTGGAAAGAGCTATCCCTCCGTGTGCTCCATAAGAACCTGTTTAATCCTTCAAACTGTCAATTGAAACCAAAAATGCTACTCTGGTGTCAGCATCCTAACTGCAAATGTTTCATGTTATAGTGAATTACTTTGAAGGTATTTGTTGCTGTAAAATACGTTTGACTTGTTGTGTAACTATTGTAGCTTGTCAATAAAACTGGTGTACGTATTTAATCTCATGAGTGGTTATTAAACATTGCTTCACTTTGTTTCT

Function

NR:

description
ladderlectin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036985820.1 True 940 mRNA 0.44 6 59697237 59701083

Neighbor

gene id symbol gene type direction distance location
LOC110518577 LOC106568836 coding downstream 3272 59690116 ~ 59693965 (-)
LOC110530245 LOC106568836 coding downstream 10457 59682935 ~ 59686780 (-)
LOC110513039 LOC106568836 coding downstream 17619 59675762 ~ 59679618 (-)
LOC110530242 LOC106568841 coding downstream 28794 59416408 ~ 59668443 (-)
LOC110530240 LOC106568842 coding downstream 359048 59286655 ~ 59338189 (-)
LOC110530246 LOC106568836 coding upstream 3262 59704345 ~ 59708192 (-)
LOC118965536 LOC106568836 coding upstream 10419 59711502 ~ 59715308 (-)
LOC118965537 LOC106568836 coding upstream 17535 59718618 ~ 59720310 (-)
LOC110530244 LOC106568836 coding upstream 24342 59725425 ~ 59727118 (-)
LOC110530252 LOC106568833 coding upstream 133729 59834812 ~ 59837439 (-)
G728973 NA non-coding downstream 1100 59687624 ~ 59696137 (-)
G728967 NA non-coding downstream 6423 59682341 ~ 59690814 (-)
G728960 NA non-coding downstream 33863 59663172 ~ 59663374 (-)
G728955 NA non-coding downstream 41899 59655113 ~ 59655338 (-)
G728954 NA non-coding downstream 42328 59654683 ~ 59654909 (-)
G728969 NA non-coding upstream 2207 59703290 ~ 59710991 (-)
G728977 NA non-coding upstream 15406 59716489 ~ 59724668 (-)
G729000 NA non-coding upstream 66596 59767679 ~ 59768045 (-)
G729004 NA non-coding upstream 72761 59773844 ~ 59774151 (-)
LOC110530228 LOC106569007 other downstream 1833360 57858233 ~ 57864165 (-)
G726900 NA other downstream 1850548 57820047 ~ 57846689 (-)
G726885 NA other downstream 1885815 57805388 ~ 57811422 (-)
chd7 LOC106599585 other downstream 2391711 57224058 ~ 57305576 (-)
G726496 NA other downstream 2560124 57136141 ~ 57137113 (-)
G731764 NA other upstream 2343952 62045035 ~ 62048119 (-)
LOC110530961 dhx9 other upstream 2479604 62165849 ~ 62185180 (-)
G735880 NA other upstream 5289218 64990301 ~ 65040241 (-)
G736216 NA other upstream 5817084 65518167 ~ 65528583 (-)
G736841 LOC106569214 other upstream 6400013 66101096 ~ 66101627 (-)

Expression


Co-expression Network