LOC110530246 (LOC106568836)


Basic Information

Item Value
gene id LOC110530246
gene name LOC106568836
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 59704345 ~ 59708192 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036985821.1
aatgataaaagcttgatgattagttgattatttgaccggttaaaggatgagagagggaggggtctgaCTGGATGGGTCCTTAAAAAAGGAGAGCAGGAAGCAGTAGAACTCAACTCACAAACAGAGCGCTGACATGACCAGACTACAGGAGACTATCACCATGGCGACGTTGACCCTTCTACTGCTTCTCAGCGCTGCCTTTACACTGGGTGACAGAATGACTTTGAACATAGCAAATGATTTGGTGAGATTTGCAGCAGACCAAAGAAACCCATGCCCCAGAGGCTGGTTCCAATTTAATTCACGCTGCTTCATGTTTGTCAAAACTGCAAGGACATGGCCCAATGCAGAGCGCCACTGTCAGTTACTTGGAGAAAAACTGAAGCCTGTGTACAACACTGTAAAGTACCTTGGCGCAAACCTGGCATCTGTGCACAGCTATGAAGAGTTCCAATTTCTACAGGCGGTGGTGTTGGTCGCGACTGGCAGTTTCCCTCTTACCTGGATTGGTGGATTTGATGCTGTTCAAGCAAAGGTGGAAAAGGACAGGCTATGGTTCTGGAGTGACGGCTCCAAATTTGATCACGAGAGCTGGGCTGAAGGGGAGCCGAATAACCGCAATGGTGCCAGAGAGCCATGTATTCAGATCAACTTTGGCGCTGAAAACGGCTGGAACGATGAATCATGTGGAAAGAGCTATCCCTCCGTGTGCTCCATAAGAACCTGTTTAATCCTTCAAACTGTCAATTGAAACCAAAAATGCTACTCTGGTGTCAGCATCCTAACTGCAAATGTTTCATGTTATAGTGAATTACTTTGAAGGTATTTGTTGCTGTAAAATACGTTTGACTTGTTGTGTAACTATTGTAGCTTGTCAATAAAACTGGTGTACGTATTTAATCTCATGAGTGGTTATTAAACATTGCTTCACTTTGTTTCT

Function

NR:

description
ladderlectin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036985821.1 True 940 mRNA 0.44 6 59704345 59708192

Neighbor

gene id symbol gene type direction distance location
LOC118965535 LOC106568836 coding downstream 3262 59697237 ~ 59701083 (-)
LOC110518577 LOC106568836 coding downstream 10380 59690116 ~ 59693965 (-)
LOC110530245 LOC106568836 coding downstream 17565 59682935 ~ 59686780 (-)
LOC110513039 LOC106568836 coding downstream 24727 59675762 ~ 59679618 (-)
LOC110530242 LOC106568841 coding downstream 35902 59416408 ~ 59668443 (-)
LOC118965536 LOC106568836 coding upstream 3310 59711502 ~ 59715308 (-)
LOC118965537 LOC106568836 coding upstream 10426 59718618 ~ 59720310 (-)
LOC110530244 LOC106568836 coding upstream 17233 59725425 ~ 59727118 (-)
LOC110530252 LOC106568833 coding upstream 126620 59834812 ~ 59837439 (-)
LOC110530255 LOC106568830 coding upstream 462545 60170737 ~ 60211903 (-)
G728973 NA non-coding downstream 8208 59687624 ~ 59696137 (-)
G728967 NA non-coding downstream 13531 59682341 ~ 59690814 (-)
G728960 NA non-coding downstream 40971 59663172 ~ 59663374 (-)
G728955 NA non-coding downstream 49007 59655113 ~ 59655338 (-)
G728954 NA non-coding downstream 49436 59654683 ~ 59654909 (-)
G728977 NA non-coding upstream 8297 59716489 ~ 59724668 (-)
G729000 NA non-coding upstream 59487 59767679 ~ 59768045 (-)
G729004 NA non-coding upstream 65652 59773844 ~ 59774151 (-)
G729030 NA non-coding upstream 105526 59813718 ~ 59815563 (-)
LOC110530228 LOC106569007 other downstream 1840468 57858233 ~ 57864165 (-)
G726900 NA other downstream 1857656 57820047 ~ 57846689 (-)
G726885 NA other downstream 1892923 57805388 ~ 57811422 (-)
chd7 LOC106599585 other downstream 2398819 57224058 ~ 57305576 (-)
G726496 NA other downstream 2567232 57136141 ~ 57137113 (-)
G731764 NA other upstream 2336843 62045035 ~ 62048119 (-)
LOC110530961 dhx9 other upstream 2472495 62165849 ~ 62185180 (-)
G735880 NA other upstream 5282109 64990301 ~ 65040241 (-)
G736216 NA other upstream 5809975 65518167 ~ 65528583 (-)
G736841 LOC106569214 other upstream 6392904 66101096 ~ 66101627 (-)

Expression


Co-expression Network