LOC118965536 (LOC106568836)


Basic Information

Item Value
gene id LOC118965536
gene name LOC106568836
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 59711502 ~ 59715308 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036985822.1
aatgataaaagcttgatgattagttgattatttgaccggttaaaggatgagagagggaggggtctgaCTGGATGGGTCCTTAAAAAAGGAGAGCAGGAAGCAGTAGAACTCAACTCACAAACAGAGCGCTGACATGACCAGACTACAGGAGACTATCACCATGGCGACGTTGACCCTTCTACTGCTTCTCAGCGCTGCCTTTACACTGGGTGACAGAATGACTTTGAACATAGCAAATGATTTGGTGAGATTTGCAGCAGACCAAAGAAACCCATGCCCCAGAGGCTGGTTCCAATTTAATTCACGCTGCTTCATGTTTGTCAAAACTGCAAGGACATGGCCCAATGCAGAGCGCCACTGTCAGTTACTTGGAGAAAAACTGAAGCCTGTGTACAACACTGTAAAGTACCTTGGCGCAAACCTGGCATCTGTGCACAGCTATGAAGAGTTCCAATTTCTACAGGCGGTGGTGTTGGTCGCGACTGGCAGTTTCCCTCTTACCTGGATTGGTGGATTTGATGCTGTTCAAGCAAAGGTGGAAAAGGACAGGCTATGGTTCTGGAGTGACGGCTCCAAATTTGATCACGAGAGCTGGGCTGAAGGGGAGCCGAATAACCGCAATGGTGCCAGAGAGCCATGTATTCAGATCAACTTTGGCGCTGAAAACGGCTGGAACGATGAATCATGTGGAAAGAGCTATCCCTCCGTGTGCTCCATAAGAACCTGTTTAATCCTTCAAACTGTCAATTGAAACCAAAAATGCTACTCTGGTGTCAGCATCCTAACTGCAAAAGTTTCATGTTATAGTGAATTACTTTGAAGGTATTTGTTGCTGTAAAATACGTTTGACTTGTTGTGTAACTATTGTAGCTTGTCAATAAAACTGGTGTACGTATTTAA

Function

NR:

description
ladderlectin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036985822.1 True 900 mRNA 0.45 6 59711502 59715308

Neighbor

gene id symbol gene type direction distance location
LOC110530246 LOC106568836 coding downstream 3310 59704345 ~ 59708192 (-)
LOC118965535 LOC106568836 coding downstream 10419 59697237 ~ 59701083 (-)
LOC110518577 LOC106568836 coding downstream 17537 59690116 ~ 59693965 (-)
LOC110530245 LOC106568836 coding downstream 24722 59682935 ~ 59686780 (-)
LOC110513039 LOC106568836 coding downstream 31884 59675762 ~ 59679618 (-)
LOC118965537 LOC106568836 coding upstream 3310 59718618 ~ 59720310 (-)
LOC110530244 LOC106568836 coding upstream 10117 59725425 ~ 59727118 (-)
LOC110530252 LOC106568833 coding upstream 119504 59834812 ~ 59837439 (-)
LOC110530255 LOC106568830 coding upstream 455429 60170737 ~ 60211903 (-)
LOC110530257 LOC106568828 coding upstream 559980 60275288 ~ 60298094 (-)
G728969 NA non-coding downstream 511 59703290 ~ 59710991 (-)
G728973 NA non-coding downstream 15365 59687624 ~ 59696137 (-)
G728967 NA non-coding downstream 20688 59682341 ~ 59690814 (-)
G728960 NA non-coding downstream 48128 59663172 ~ 59663374 (-)
G728955 NA non-coding downstream 56164 59655113 ~ 59655338 (-)
G728977 NA non-coding upstream 1181 59716489 ~ 59724668 (-)
G729000 NA non-coding upstream 52371 59767679 ~ 59768045 (-)
G729004 NA non-coding upstream 58536 59773844 ~ 59774151 (-)
G729030 NA non-coding upstream 98410 59813718 ~ 59815563 (-)
LOC110530228 LOC106569007 other downstream 1847625 57858233 ~ 57864165 (-)
G726900 NA other downstream 1864813 57820047 ~ 57846689 (-)
G726885 NA other downstream 1900080 57805388 ~ 57811422 (-)
chd7 LOC106599585 other downstream 2405976 57224058 ~ 57305576 (-)
G726496 NA other downstream 2574389 57136141 ~ 57137113 (-)
G731764 NA other upstream 2329727 62045035 ~ 62048119 (-)
LOC110530961 dhx9 other upstream 2465379 62165849 ~ 62185180 (-)
G735880 NA other upstream 5274993 64990301 ~ 65040241 (-)
G736216 NA other upstream 5802859 65518167 ~ 65528583 (-)
G736841 LOC106569214 other upstream 6385788 66101096 ~ 66101627 (-)

Expression


Co-expression Network