LOC110530244 (LOC106568836)


Basic Information

Item Value
gene id LOC110530244
gene name LOC106568836
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 59725425 ~ 59727118 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002474499.2
ctctgtgtacTGCTTGCTCTAGCGCCACTGTCAGTTACTTGGAGAAAAACTGAAGCCTGTGTACAACACTGTAAAGTACCTTGGCGCAAACCTGGCATCTGTGCACAGCTATGAAGAGTTCCAATTTCTACAGGCGGTGGTGTTGGTCGCGACTGGCAGTTTCCCTCTTACCTGGATTGGTGGATTTGATGCTGTTCAAGCAAAGGTGGAAAAGGACAGGCTATGGTTCTGGAGTGACGGCTCCAAATTTGATCACGAGAGCTGGGCTGAAGGGGAGCCGAATAACCGCAATGGTGCCAGAGAGCCATGTATTCAGATCAACTTTGGCGCTGAAAACGGCTGGAACGATGAATCATGTGGAAAGAGCTATCCCTCCGTGTGCTCCATAAGAACCTGTTTAATCCTTCAAACTGTCAATTGAAACCAAAAATGCTACTCTGGTGTCAGCATCCTAACTGCAAAAGTTTCATGTTATAGTGAATTACTTTGAAGGTATTTGTTGCTGTAAAATACGTTTGACTTGTTGTGTAACTATTGTAGCTTGTCAATAAAACTGGTGTACGTATTTAA
>TU828006
CGCCACTGTCAGTTACTTGGAGAAAAACTGAAGCCTGTGTACAACACTGTAAAGTACCTTGGCGCAAACCTGGCATCTGTGCACAGCTATGAAGAGTTCCAATTTCTACAGGCGGTGGTGTTGGTCGCGACTGGCAGTTTCCCTCTTACCTGGATTGGTGGATTTGATGCTGTTCAAGCAAAGGTGGAAAAGGACAGGCTATGGTTCTGGAGTGACGGCTCCAAATTTGATCACGAGAGCTGGGCTGAAGGGGAGCCGAATAACCGCAATGGTGCCAGAGAGCCATGTATTCAGATCAACTTTGGCGCTGAAAACGGCTGGAACGATGAATCATGTGGAAAGAGCTATCCCTCCGTGTGCTCCATAAGAACCTGTTTAATCCTTCAAACTGTCAATTGAAACCAAAAATGCTACTCTGGTGTCAGCATCCTAACTGCAA

Function

NR:

description
ladderlectin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002474499.2 False 570 mRNA 0.45 3 59725425 59727118
TU828006 True 439 lncRNA 0.48 3 59725534 59727096

Neighbor

gene id symbol gene type direction distance location
LOC118965537 LOC106568836 coding downstream 5115 59718618 ~ 59720310 (-)
LOC118965536 LOC106568836 coding downstream 10117 59711502 ~ 59715308 (-)
LOC110530246 LOC106568836 coding downstream 17233 59704345 ~ 59708192 (-)
LOC118965535 LOC106568836 coding downstream 24342 59697237 ~ 59701083 (-)
LOC110518577 LOC106568836 coding downstream 31460 59690116 ~ 59693965 (-)
LOC110530252 LOC106568833 coding upstream 107694 59834812 ~ 59837439 (-)
LOC110530255 LOC106568830 coding upstream 443619 60170737 ~ 60211903 (-)
LOC110530257 LOC106568828 coding upstream 548170 60275288 ~ 60298094 (-)
gtpbp4 gtpbp4 coding upstream 574039 60301157 ~ 60311600 (-)
LOC118965687 NA coding upstream 580113 60307231 ~ 60307412 (-)
G728977 NA non-coding downstream 757 59716489 ~ 59724668 (-)
G728969 NA non-coding downstream 14434 59703290 ~ 59710991 (-)
G728973 NA non-coding downstream 29288 59687624 ~ 59696137 (-)
G728967 NA non-coding downstream 34611 59682341 ~ 59690814 (-)
G728960 NA non-coding downstream 62051 59663172 ~ 59663374 (-)
G729000 NA non-coding upstream 40561 59767679 ~ 59768045 (-)
G729004 NA non-coding upstream 46726 59773844 ~ 59774151 (-)
G729030 NA non-coding upstream 86600 59813718 ~ 59815563 (-)
G729042 NA non-coding upstream 114487 59841605 ~ 59841979 (-)
G729046 NA non-coding upstream 117692 59844810 ~ 59845442 (-)
LOC110530228 LOC106569007 other downstream 1861548 57858233 ~ 57864165 (-)
G726900 NA other downstream 1878736 57820047 ~ 57846689 (-)
G726885 NA other downstream 1914003 57805388 ~ 57811422 (-)
chd7 LOC106599585 other downstream 2419899 57224058 ~ 57305576 (-)
G726496 NA other downstream 2588312 57136141 ~ 57137113 (-)
G731764 NA other upstream 2317917 62045035 ~ 62048119 (-)
LOC110530961 dhx9 other upstream 2453569 62165849 ~ 62185180 (-)
G735880 NA other upstream 5263183 64990301 ~ 65040241 (-)
G736216 NA other upstream 5791049 65518167 ~ 65528583 (-)
G736841 LOC106569214 other upstream 6373978 66101096 ~ 66101627 (-)

Expression


Co-expression Network