LOC110530252 (LOC106568833)


Basic Information

Item Value
gene id LOC110530252
gene name LOC106568833
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 59834812 ~ 59837439 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021613161.2
GTTCGCCAAGAACTGTTAACATGCAGAGCGAGCGATTAACGGTGGTGCCAAATGGAGATATCGGTGCGTAAATTATATTCTGTCAGTCAACAGTCCACAGCAGACGGAGAAGAGTGGtagttttttttacaaaataacGTAAACAGAGAATAAACGATGTGATGTGTGGATTCCCTAACATTATACCAGCCAGAAGACACCCGAAGGCTTGCTTATCTTCAAAAACACCGTCTGCGCCAAGGATGAGTTTACCCGCATCTCTGGAATAATCGGACTCTACAGCCTACTTGCAAGCGCAAGTTCGCTGGCACTTTGAAGCAGACGAATTCAACAGTGAATGAGGATGGAGTGCCAGCTGCTGGGGTGGTGCATGCTTTTTGCACTCGTTCTACACAGGTCGAGCTGCGCCGCGGCGAAGGAGCTACAATGCCAGGAGATATCCGTGCCTCTATGCAAAGGAATCGGCTACAACTACACCTACATGCCCAACCAGTTCAATCACGACACACAGGACGAGGCAGGGCTGGAGGTGCACCAGTTTTGGCCCCTGGTGGAAATCAAGTGTTCTCCGGACCTTAAGTTCTTTCTCTGTAGCATGTACACTCCTATTTGCCTGGAGGACTACAAGAAGCCCCTGCCGCCGTGTCGGAGTGTCTGCGAGAGAGCCAAGGCAGGCTGCGCGCCTCTGATGAGGCAGTACGGATTCCCATGGCCAGACCGAATGAGATGCGATGTATTACCAGTGCAGGGTAACCAAGATACATTGTGCATGGACTATAACAGAAGCGAGACAACGACTGTTTCTCCAGTTGTTGCAAAGCCCACAAACCGCCCCGTTAAACCAATAAACCCACGAAAGAAGAATGGACACGGGCGTTCGAATGTTCCTAGTAAACACAAACCTCAGAGTTCTCCTTGCGAACCCCGGTGTCACTGCCGCGCGCCCATGGTTCAAGTCAACAGTGACAGTCATCCTCTATATAACAGAGTTAAAACGGGACAGACTCTGAACTGTGCCATGCCCTGCCACAATCCTTACTTCTCCCAAGACGAAAGGACATTTACTGCATTTTGGATAGGACTATGGTCCGTGTTATGTTTTATCTCCACTTTTGCAACAGTGGCAACTTTCTTAATCGACATGGAGCGGTTCAAATATCCGGAGAGACCCATTATTTTCCTCTCTGCTTGTTACATGTTTGTCTCCGTCGGTTACATTGTCAGACTAATTGCTGGACATGAACAAGTGGCTTGTAACATGGAGCATGATACCGAACACATCCACTACGAGACCACCGGCCCTGCGCTTTGTACCATTGTATTTCTACTCATCTACTTCTTCGGCATGGCAAGTTCtatttggtgggttattctgtcccTTACTTGGTTTCTGGCTGCGGGGATGAAGTGGGGGAATGAGGCCATAGCCAGTTACTCCCAGTATTTTCATTTAGCTGCCTGGCTGATACCCAGCATGAAATCAATAGCTGTGTTGGCGTTGAGTTCAGTGGACGGGGACCCCGTGGCTGGAATATGCTACGTTGGCAATCAGAACTTGGATAACCTCAGGGGCTTTGTTTTGGCGCCGTTGGTTATCTATCTGTTCATTGGGACTATGTTTCTCCTGGCTGGATTTGTGTCACTGTTCCGGATCCGGAGTGTTATAAAGCAAGGAGGGACGAAAACAGACAAGTTGGAGAGACTGATGATCAGAATAGGTATTTTTACAGTGCTTTACACTGTCCCAGCCACGATTATAGTAGCCTGTTACTTCTATGAGCAGCACAACAGACAGACTTGGGAAATAACCAATAACTGTTCCTGCTTGTCGGAGCATGAAATGCAAAAGCCAGACTACGCTGTGTTCATGCTCAAATATTTCATGTGCCTTTTGGTTGGCATCACGTCCGGCGCGTGGGTCTGGTCGGGGAAAACTTTAGAATCCTGGAGGAAATTTTGCACCCGCTGCTGTTGGGCCAGCAAGACCACGAGCGGGTCAATGTACAGTGACGTTAGCACGGGACTGACGTGGAGGTCTGGCACTGCGAGCTCTGTCTCTTGTCCCAAACAGATGCCATTGTCTCGGGTTTGAAAAGGAAGAATAGACATCTAATTATGTTGGGATTGTCCATCAGCGTGTTCAAATTAACACATTAACGAGCACGTAATGATTTCTCTTCTTACTCAATGAGACCCGCAGCCAGTTTAGAACCATGTAAATATAATGAGATGTGATTCTATGCTTACTGTTGAGGACCAGTTCAATGACATACACAATACAGTGATATTTTTCGATAGGCGGAAATTCAAGGTTATATCTACTGTTCTATTCCTTATTACAAATAACCATATTGTCTTAAACACACCATTTATTAATTCGAAAGAGAGACTTGGCGTTGTCTCATTTTAACCTGTAAAATTTGCTTAGCAAAGATGGTTTGAAGTATGCTGTCTCATACGGGTTTTGTTGGTGTTTAATGTATTTATATAATTATTCATGTAAAAACATTGTACATTTGTATATAAAATGTAGGCCTATACGAGATTGTAAATGTGTATAATTAACTTTGATAGAAGATCTTTATTTTGAGAATAAAACCATTTTTATAAAATGTTTACCTGTGCGTC

Function

NR:

description
frizzled-8-like

GO: NA

KEGG:

id description
K02375 FZD5_8, fz2; frizzled 5/8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021613161.2 True 2628 mRNA 0.45 1 59834812 59837439

Neighbor

gene id symbol gene type direction distance location
LOC110530244 LOC106568836 coding downstream 107694 59725425 ~ 59727118 (-)
LOC118965537 LOC106568836 coding downstream 114502 59718618 ~ 59720310 (-)
LOC118965536 LOC106568836 coding downstream 119504 59711502 ~ 59715308 (-)
LOC110530246 LOC106568836 coding downstream 126620 59704345 ~ 59708192 (-)
LOC118965535 LOC106568836 coding downstream 133729 59697237 ~ 59701083 (-)
LOC110530255 LOC106568830 coding upstream 333298 60170737 ~ 60211903 (-)
LOC110530257 LOC106568828 coding upstream 437849 60275288 ~ 60298094 (-)
gtpbp4 gtpbp4 coding upstream 463718 60301157 ~ 60311600 (-)
LOC118965687 NA coding upstream 469792 60307231 ~ 60307412 (-)
LOC110530262 LOC106568824 coding upstream 762763 60600202 ~ 60627476 (-)
G729030 NA non-coding downstream 19249 59813718 ~ 59815563 (-)
G729004 NA non-coding downstream 60661 59773844 ~ 59774151 (-)
G729000 NA non-coding downstream 66767 59767679 ~ 59768045 (-)
G728974 NA non-coding downstream 100431 59689078 ~ 59734381 (-)
G729042 NA non-coding upstream 4166 59841605 ~ 59841979 (-)
G729046 NA non-coding upstream 7371 59844810 ~ 59845442 (-)
G729071 NA non-coding upstream 39799 59877238 ~ 59877537 (-)
G729075 NA non-coding upstream 47319 59884758 ~ 59884957 (-)
G729078 NA non-coding upstream 51387 59888826 ~ 59889104 (-)
LOC110530228 LOC106569007 other downstream 1970935 57858233 ~ 57864165 (-)
G726900 NA other downstream 1988123 57820047 ~ 57846689 (-)
G726885 NA other downstream 2023390 57805388 ~ 57811422 (-)
chd7 LOC106599585 other downstream 2529286 57224058 ~ 57305576 (-)
G726496 NA other downstream 2697699 57136141 ~ 57137113 (-)
G731764 NA other upstream 2207596 62045035 ~ 62048119 (-)
LOC110530961 dhx9 other upstream 2343248 62165849 ~ 62185180 (-)
G735880 NA other upstream 5152862 64990301 ~ 65040241 (-)
G736216 NA other upstream 5680728 65518167 ~ 65528583 (-)
G736841 LOC106569214 other upstream 6263657 66101096 ~ 66101627 (-)

Expression


Co-expression Network