LOC110530255 (LOC106568830)


Basic Information

Item Value
gene id LOC110530255
gene name LOC106568830
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 60170737 ~ 60211903 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021613166.2
AAGCTCCCTCATAGGCTCACTGCTGCCATCGGGAACAGTGGGGAGATGAGCGTGTCGAGAGCAGGAAAAGGGGGCGTAATCacttattttatttcacaacaAAATACAACTACCGGTGTTCAGATATTATATTTGTGAAGGATAGACGAGGAGCCATGGCGAAGCAGCAGGACACAAAGAAATTATTTGAGGATCTCTCTGGCGCCGGGAAATCCATCGGCGTTCTGACAAGCGGAGGAGATGCTCAAGGTATGAATGCTGCGGTCCGGGCTGTTGTCCGCATGGGTATTTATGTGGGAGCTAAAGTCTACTTCATCCATGAGGGTTACCAGGGTATGGTAGACGGTGGAGATAACATTGAAGAGGCATCATGGGAAAGTGTCTCCAGCATGTTACAAGTGGGTGGCACAGTCATTGGCAGTGCCCGCTGCAAGGAGTTCCGCAGCCACGAGGGGCGTCTAAAGGCTGCCCACCAACTGGTTCTGCGTGGCATCACCAACCTGTGTGTGATCGGAGGGGACGGTAGCCTCACGGGGGCCAACCTCTTCAGAGAAGAGTGGAGCGGACTACTGGAAGAACTTGTTCAACAGGGTCTGATTGATGAGGAGGCTGCCCAGAACAACTCAGAGCTGCACATCGTGGGAATGGTGGGCTCCATCGACAACGACTTCTGTGGCACTGACATGACCATCGGGACAGACTCTGCCCTGCACAGAATCATAGAGGTGGTAGACGCCATCATGACTACTGCACAGAGcCACCAGAGGACGTTTGTGCTAGAGGTCATGGGAAGGCATTGTGGgTACCTGGCTCTAGTCAGTGCTCTGGCCTGTGGGGCCGACTGGGTCCTGATCCCTGAGATGCCCCCTGAGGATGGTTGGGAGGAACATATGTGTCAGAAACTATctgagAACCGTGCAGATAAGAAACGGCTCAATATCATTATTGTAGCTGAGGGGGCGATAGATTGCCACAACAAGCCTATCACTACAAACCATATTAAGGAACTGGTTGTTAGCTGTCTGGGGTTTGACACCCGAGTCACCATCCTGGGTCACGTCCAGAGAGGAGGAACCCCCTCTGCCTTCGACAGGATCCTAGCCAGTCGTATGGGAGTGGAGGCGGTCCTGGCCCTGCTGGAGGCGTCAGACAGTACCCCGGCCTGTGTGGTGTCTCTGTGTGGGAACCAGGCTGTCCGTCTGCCCCTCATGGAGTGTGTTCAGATGACACAAGATGTCCAGAAATCCATGGACGAGAAGAATTTTGAGGAAGCCGTGAGACTGCGTGGGAGGAGTTTCGAAAACAACCTGAACACCTACAAACTCCTCTCTTACCACAAAGCAGACTCTGAACTCCCAAATAGCTCCTTCAACGTGGCTGTGCTGAACGTGGGCGCCCCCGCGGCGGGCATGAACGCAGCTGTCCGCTCGGCCGTCAGGGTGGGCATCAAAGAGGGGCACAAGATGTTTGCCGTTAATGACGGCTTCGAGGGATTCTACAACGGACAGATAAAGGAGATTACATGGGGAGATGTAGCAGGTTGGACCGGCCAAGGGGGGTCCATACTGGGAACAAAGAGAACCCTTCCAGCGAAGCATCTTGATAAGATTGCTGAACAAATCAGGATACATAACATCAATGCTTTGCTTGTTATCGGTGGATTCGAGGCGTTTGAGTGTCTGCTGCAGCTCTATGAGGCCCGGACCAGCCATGAGGACTTTTGCATCCCGATGTGTATGCTGCCTGCCACCATTAGTAACAATGTGCCCGGTACTGATCTGAGTATCGGGGCAGACACTTCCCTCAATGCTATTGTGGAGacatgTGACCGCATCAAGCAGTCTGCCAGTGGGACCAAGCGGCGTGTGTTCATCATTGAGACCATGGGGGGGTACTGTGGGTACCTGGCCAGTGTCGGGGGGCTGGCTGCGGGGGCTGACACTGTCTACATCTATGAGGAACCCTTCGACATCAGAGACCTCCAGTCCAACGTCGAGCACTTGACAGAGAAGATGAAGACGGGGATCCAGAGAGGCTTGGTGCTGAGGAATGAGAACTCCAACGAGAACTTCACCACAGATTTCATCTACCAGCTGTACTctgaggaggggaaaggggtgtTTGACTGCAGGAAGAACGTGCTTGGACATATGCAGCAGGGAGGGGCTCCTTCTCCATTTGACAGGAACTTTGGAACGAAGATTGCAGCAAAAGCAATTCAGTGGATTTCAAGAAAGCTAAAGGAGTCCTACAAAGACGGGAAAGTGTTCGCTAACACAGAGGACACGGCCTGTTTGCTGGGGATGCGTCGCAGAACCATGGCCTTCCAACCAGTAGTGCAGCTGAAAGATGAGACAGACTTTGCccacAGGATCCCTAAGGAACAGTGGTGGTTGAAGCTTCACCCCCTGATGAAGATCCTGGCTAAGTACAAGACCAGCTACGATGTGTCTGACTCTGGCCAGCTGGAGCCAGTGACCCGGGTCAGGCCCAAGAAGGCAGACTGAACAGACCATCTAGCCTTGCTGACCAGCAGATAGCTAGACTAGATAGGCTAGTCTGTAGAGGCCTAGGCTGCTCTGAGCTGATCTATTCAGTGTAACTTAGCCTTTATCATGATAACTCTTACCAGCACTTTTCAGTCCATCCCATTCTCATGTCTCCTCAGAAACTCCACCCTTCATCCGAAGTATGCACTTGCACACTTTCTCTTATGGATTTTACAATGGTGAAAACTGCTTCCAGCCAACACTTGTGCTTTTAAATTCATGACTGGGCGTGTTATAGTGCACACTTCTGGAAAAGGGTGGAGaatcaggggcggcagggtagcctaatggttagagcgttggactagtaaccggaaggttgcaagttcaaacccccgagctgacatggtacaaatctgtcgttctgcccctgaacaggcagttaacccactaggccgtcattgaaaataagaatttgttcttaactgacttgcctagttaaataaaggttaaaaaaaaaaaaaaaaaaaaaaatcaggatgTAGCTTCAGTCGACTCCCATAGgttcttcttccctctccatGTTCTTCTAAAGGGAGAGCCGACTGTGTCTCCAATCACCTTATCTTCCACTGTGTGTTGTTACTCTATACTTGCACTTTGTATCAAACCTGGGCTGTGTGTGgcacttaaagggatagttcacccaaataaaagaaaaagaacacagaggttttcttaccctgtaagcagtttGTGGCACTTAAGAGTAGGGGCTGTATTCAATCCATGTTGCAGAAATTCAGCGTTCCTGCGTTAGCTGAAGATGCCGGCTCAGTAGGAAATTACTGCTTTAGCGatccagattgaatagagccctgtTTGTTCTGCTGCTGTATTATGTTGCTTTGTTGAGGATGTGTGAAAACCATTATTATGCAATATAACCTTGTTCTAATATGTTGACTCACTGTGTGTTTTCTCCAATTAAAGAATACTTGTGAAACCTCAA
>XM_021613168.2
AATTAATTACAGGAGGAAAGCTCCCTCATAGGCTCACTGCTGCCATCGGGAACAGTGGGGAGATGAGCGTGTCGAGAGCAGGAAAAGGGGGCGTAATCacttattttatttcacaacaAAATACAACTACCGGTGTTCAGATATTATATTTGTGAAGGATAGACGAGGAGCCATGGCGAAGCAGCAGGACACAAAGAAATTATTTGAGGATCTCTCTGGCGCCGGGAAATCCATCGGCGTTCTGACAAGCGGAGGAGATGCTCAAGGTATGAATGCTGCGGTCCGGGCTGTTGTCCGCATGGGTATTTATGTGGGAGCTAAAGTCTACTTCATCCATGAGGGTTACCAGGGTATGGTAGACGGTGGAGATAACATTGAAGAGGCATCATGGGAAAGTGTCTCCAGCATGTTACAAGTGGGTGGCACAGTCATTGGCAGTGCCCGCTGCAAGGAGTTCCGCAGCCACGAGGGGCGTCTAAAGGCTGCCCACCAACTGGTTCTGCGTGGCATCACCAACCTGTGTGTGATCGGAGGGGACGGTAGCCTCACGGGGGCCAACCTCTTCAGAGAAGAGTGGAGCGGACTACTGGAAGAACTTGTTCAACAGGGTCTGATTGATGAGGAGGCTGCCCAGAACAACTCAGAGCTGCACATCGTGGGAATGGTGGGCTCCATCGACAACGACTTCTGTGGCACTGACATGACCATCGGGACAGACTCTGCCCTGCACAGAATCATAGAGGTGGTAGACGCCATCATGACTACTGCACAGAGcCACCAGAGGACGTTTGTGCTAGAGGTCATGGGAAGGCATTGTGGgTACCTGGCTCTAGTCAGTGCTCTGGCCTGTGGGGCCGACTGGGTCCTGATCCCTGAGATGCCCCCTGAGGATGGTTGGGAGGAACATATGTGTCAGAAACTATctgagAACCGTGCAGATAAGAAACGGCTCAATATCATTATTGTAGCTGAGGGGGCGATAGATTGCCACAACAAGCCTATCACTACAAACCATATTAAGGAACTGGTTGTTAGCTGTCTGGGGTTTGACACCCGAGTCACCATCCTGGGTCACGTCCAGAGAGGAGGAACCCCCTCTGCCTTCGACAGGATCCTAGCCAGTCGTATGGGAGTGGAGGCGGTCCTGGCCCTGCTGGAGGCGTCAGACAGTACCCCGGCCTGTGTGGTGTCTCTGTGTGGGAACCAGGCTGTCCGTCTGCCCCTCATGGAGTGTGTTCAGATGACACAAGATGTCCAGAAATCCATGGACGAGAAGAATTTTGAGGAAGCCGTGAGACTGCGTGGGAGGAGTTTCGAAAACAACCTGAACACCTACAAACTCCTCTCTTACCACAAAGCAGACTCTGAACTCCCAAATAGCTCCTTCAACGTGGCTGTGCTGAACGTGGGCGCCCCCGCGGCGGGCATGAACGCAGCTGTCCGCTCGGCCGTCAGGGTGGGCATCAAAGAGGGGCACAAGATGTTTGCCGTTAATGACGGCTTCGAGGGATTCTACAACGGACAGATAAAGGAGATTACATGGGGAGATGTAGCAGGTTGGACCGGCCAAGGGGGGTCCATACTGGGAACAAAGAGAACCCTTCCAGCGAAGCATCTTGATAAGATTGCTGAACAAATCAGGATACATAACATCAATGCTTTGCTTGTTATCGGTGGATTCGAGGCCATCCTGGGAGTCATAGAACTGTCCGCCGCCCGGGAGAAATATAATGACTTCTGTGTCCCCATGGTTATGGTCCCTGCCACAGTCTCTAACAATATACAGGATTCTGATCTCAGCATTGGCGCAGACACAGCTTTAAATGCTATTACTTATacatgTGACCGCATCAAGCAGTCTGCCAGTGGGACCAAGCGGCGTGTGTTCATCATTGAGACCATGGGGGGGTACTGTGGGTACCTGGCCAGTGTCGGGGGGCTGGCTGCGGGGGCTGACACTGTCTACATCTATGAGGAACCCTTCGACATCAGAGACCTCCAGTCCAACGTCGAGCACTTGACAGAGAAGATGAAGACGGGGATCCAGAGAGGCTTGGTGCTGAGGAATGAGAACTCCAACGAGAACTTCACCACAGATTTCATCTACCAGCTGTACTctgaggaggggaaaggggtgtTTGACTGCAGGAAGAACGTGCTTGGACATATGCAGCAGGGAGGGGCTCCTTCTCCATTTGACAGGAACTTTGGAACGAAGATTGCAGCAAAAGCAATTCAGTGGATTTCAAGAAAGCTAAAGGAGTCCTACAAAGACGGGAAAGTGTTCGCTAACACAGAGGACACGGCCTGTTTGCTGGGGATGCGTCGCAGAACCATGGCCTTCCAACCAGTAGTGCAGCTGAAAGATGAGACAGACTTTGCccacAGGATCCCTAAGGAACAGTGGTGGTTGAAGCTTCACCCCCTGATGAAGATCCTGGCTAAGTACAAGACCAGCTACGATGTGTCTGACTCTGGCCAGCTGGAGCCAGTGACCCGGGTCAGGCCCAAGAAGGCAGACTGAACAGACCATCTAGCCTTGCTGACCAGCAGATAGCTAGACTAGATAGGCTAGTCTGTAGAGGCCTAGGCTGCTCTGAGCTGATCTATTCAGTGTAACTTAGCCTTTATCATGATAACTCTTACCAGCACTTTTCAGTCCATCCCATTCTCATGTCTCCTCAGAAACTCCACCCTTCATCCGAAGTATGCACTTGCACACTTTCTCTTATGGATTTTACAATGGTGAAAACTGCTTCCAGCCAACACTTGTGCTTTTAAATTCATGACTGGGCGTGTTATAGTGCACACTTCTGGAAAAGGGTGGAGaatcaggggcggcagggtagcctaatggttagagcgttggactagtaaccggaaggttgcaagttcaaacccccgagctgacatggtacaaatctgtcgttctgcccctgaacaggcagttaacccactaggccgtcattgaaaataagaatttgttcttaactgacttgcctagttaaataaaggttaaaaaaaaaaaaaaaaaaaaaaatcaggatgTAGCTTCAGTCGACTCCCATAGgttcttcttccctctccatGTTCTTCTAAAGGGAGAGCCGACTGTGTCTCCAATCACCTTATCTTCCACTGTGTGTTGTTACTCTATACTTGCACTTTGTATCAAACCTGGGCTGTGTGTGgcacttaaagggatagttcacccaaataaaagaaaaagaacacagaggttttcttaccctgtaagcagtttGTGGCACTTAAGAGTAGGGGCTGTATTCAATCCATGTTGCAGAAATTCAGCGTTCCTGCGTTAGCTGAAGATGCCGGCTCAGTAGGAAATTACTGCTTTAGCGatccagattgaatagagccctgtTTGTTCTGCTGCTGTATTATGTTGCTTTGTTGAGGATGTGTGAAAACCATTATTATGCAATATAACCTTGTTCTAATATGTTGACTCACTGTGTGTTTTCTCCAATTAAAGAATACTTGTGAAACCTCAA

Function

NR:

description
ATP-dependent 6-phosphofructokinase, platelet type-like isoform X3

GO:

id name namespace
GO:0046835 carbohydrate phosphorylation biological_process
GO:0006096 glycolytic process biological_process
GO:0006002 fructose 6-phosphate metabolic process biological_process
GO:0005945 6-phosphofructokinase complex cellular_component
GO:0003872 6-phosphofructokinase activity molecular_function
GO:0005524 ATP binding molecular_function

KEGG:

id description
K00850 pfkA, PFK; 6-phosphofructokinase 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021613166.2 False 3501 mRNA 0.50 22 60170737 60211886
XM_021613168.2 True 3518 mRNA 0.50 22 60170737 60211903

Neighbor

gene id symbol gene type direction distance location
LOC110530252 LOC106568833 coding downstream 333298 59834812 ~ 59837439 (-)
LOC110530244 LOC106568836 coding downstream 443619 59725425 ~ 59727118 (-)
LOC118965537 LOC106568836 coding downstream 450427 59718618 ~ 59720310 (-)
LOC118965536 LOC106568836 coding downstream 455429 59711502 ~ 59715308 (-)
LOC110530246 LOC106568836 coding downstream 462545 59704345 ~ 59708192 (-)
LOC110530257 LOC106568828 coding upstream 63385 60275288 ~ 60298094 (-)
gtpbp4 gtpbp4 coding upstream 89254 60301157 ~ 60311600 (-)
LOC118965687 NA coding upstream 95328 60307231 ~ 60307412 (-)
LOC110530262 LOC106568824 coding upstream 388299 60600202 ~ 60627476 (-)
LOC110530271 LOC106569036 coding upstream 906196 61118099 ~ 61140626 (-)
G729676 NA non-coding downstream 41313 60129200 ~ 60129424 (-)
G729674 NA non-coding downstream 43268 60127261 ~ 60127469 (-)
G729673 NA non-coding downstream 43582 60126796 ~ 60127155 (-)
G729672 NA non-coding downstream 44276 60126199 ~ 60126461 (-)
G729662 NA non-coding downstream 58158 60112352 ~ 60112579 (-)
G729813 NA non-coding upstream 155773 60367676 ~ 60375018 (-)
G729874 NA non-coding upstream 230815 60442718 ~ 60447873 (-)
G729981 NA non-coding upstream 374259 60586162 ~ 60586860 (-)
G729985 NA non-coding upstream 385105 60597008 ~ 60597609 (-)
G729998 NA non-coding upstream 433345 60645248 ~ 60645463 (-)
LOC110530228 LOC106569007 other downstream 2306860 57858233 ~ 57864165 (-)
G726900 NA other downstream 2324048 57820047 ~ 57846689 (-)
G726885 NA other downstream 2359315 57805388 ~ 57811422 (-)
chd7 LOC106599585 other downstream 2865211 57224058 ~ 57305576 (-)
G726496 NA other downstream 3033624 57136141 ~ 57137113 (-)
G731764 NA other upstream 1833132 62045035 ~ 62048119 (-)
LOC110530961 dhx9 other upstream 1968784 62165849 ~ 62185180 (-)
G735880 NA other upstream 4778398 64990301 ~ 65040241 (-)
G736216 NA other upstream 5306264 65518167 ~ 65528583 (-)
G736841 LOC106569214 other upstream 5889193 66101096 ~ 66101627 (-)

Expression


Co-expression Network