si:dkey-97a13.12 (LOC106569040)


Basic Information

Item Value
gene id si:dkey-97a13.12
gene name LOC106569040
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 61184985 ~ 61189649 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021613195.2
AATAGATTCAAAGGTGTCAGCGAGTTCGAAGAAACACTTTATGCGACTTGCGTGTGTGTGATGGAtagaaagggtgtgtgtgtgacatgcgtgtgaggtgtgtatgtgtgatggatagaaagggtgtgtgtgtgatggagagaaagggtATGTGTTACTGTGTTTCTGTGCGGTGGGATTAGTGACACTGGTGTTATTTAAAGCGGCGTGCAATAGTGTGGAGCTGCCAGACAGTGTCTCAGACACAGCAGGAGAGGATGCAGAAGATCTACGTGCAGAGTGATGGGCACTTTGAGGTATTCACCACTGTCTTCTCCCCACAAGCTTGTAGAGCAAGAACAAGATACAGGCCTAGGGAAGCAGTGAAGGTAGTAGCAGCAGTCAACTACAGGCCTCAATGGCCAGATGAACTtcaactctgtcagggtgacaTCATCCAAGTTCTCTTCAGAGATGAGCCCTCGTGGTGGTTCGGGCGTCTACAGAACGGGGCAGAGGGGTACTTTCCAACCGCATGTgtgaccagactgaaccagAGTGATGATCATGAGCCGGTGAATGCCAATCCAAGCTCGTTACAGAGTTCATCCAAGGATGCAGCTCCTGATGCCCCATGTGGCTGCACAAGCGGTCGTAGTACTCCAAAGGTCCCCAGGCATGAGAAAGAAAGCCTCTTCCGGGCCCTGGGACACGAGGCCTCCTCAAAGTCAGGCTCGGCCCACAGCTCCCCTAGCCTGTTGCACCGTGTGCTGTCCAAGGGCCACCGGAGGAAGATTGACACCCAGGGACTGGGAGATGTAAATTGCTCCATCAATGTAGCATTTGAACCTGACTGATTGTTTATCTCTAAGAATTGTATCATGTATGTGCAGCCCTTTCTTCTGTGTTAGTTTCCATGGCTGTTAGGTTCATCAAAACACAAACTTCACAAAACTGGAGCTATTATAGCTGTCATATTTTGGGGTAATAGTGAAATATCAATCATAAGGGTGTGACATGTTACACTACTTGTTCTGGAGTATGTTTATCCTCTATTCACCATTGAGATGAATGGAGTACAGCAAAGTACATGTTCTGTCAGTCTTCTTCTCTACTGTTAATAGCCAACTGTGATCCCTTATTTGTTAGCTGTTTTTACCCCATTGTTATTTGCACTGCTGCTTCACTTTAATTTGTACATATTGCATATATTATATTTGAACAAAATACATTGTAATGTTACATCATTGTTTGCCGTCTTCATAGTATGATTGAGCTTCCTGCCCACCCAGTCTTCAGGCACTCACAAGCAAAACACACTCCTCTACAGTGGGAA
>XM_021613196.2
AGATTCAAAGGTGTCAGCGAGTTCGAAGAAACACTTTATGCGACTTGCGTGTGTGTGATGGAtagaaagggtgtgtgtgtgacatgcgtgtgaggtgtgtatgtgtgatggatagaaagggtgtgtgtgtgatggagagaaagggtATGTGTTACTGTGTTTCTGTGCGGTGGGATTAGTGACACTGGTGTTATTTAAAGCGGCGTGCAATAGTGTGGAGCTGCCAGACAGTGTCTCAGACACAGCAGGAGAGGATGCAGAAGATCTACGTGCAGAGTGATGGGCACTTTGAGGTATTCACCACTGTCTTCTCCCCACAAGGTAGTAGCAGCAGTCAACTACAGGCCTCAATGGCCAGATGAACTtcaactctgtcagggtgacaTCATCCAAGTTCTCTTCAGAGATGAGCCCTCGTGGTGGTTCGGGCGTCTACAGAACGGGGCAGAGGGGTACTTTCCAACCGCATGTgtgaccagactgaaccagAGTGATGATCATGAGCCGGTGAATGCCAATCCAAGCTCGTTACAGAGTTCATCCAAGGATGCAGCTCCTGATGCCCCATGTGGCTGCACAAGCGGTCGTAGTACTCCAAAGGTCCCCAGGCATGAGAAAGAAAGCCTCTTCCGGGCCCTGGGACACGAGGCCTCCTCAAAGTCAGGCTCGGCCCACAGCTCCCCTAGCCTGTTGCACCGTGTGCTGTCCAAGGGCCACCGGAGGAAGATTGACACCCAGGGACTGGGAGATGTAAATTGCTCCATCAATGTAGCATTTGAACCTGACTGATTGTTTATCTCTAAGAATTGTATCATGTATGTGCAGCCCTTTCTTCTGTGTTAGTTTCCATGGCTGTTAGGTTCATCAAAACACAAACTTCACAAAACTGGAGCTATTATAGCTGTCATATTTTGGGGTAATAGTGAAATATCAATCATAAGGGTGTGACATGTTACACTACTTGTTCTGGAGTATGTTTATCCTCTATTCACCATTGAGATGAATGGAGTACAGCAAAGTACATGTTCTGTCAGTCTTCTTCTCTACTGTTAATAGCCAACTGTGATCCCTTATTTGTTAGCTGTTTTTACCCCATTGTTATTTGCACTGCTGCTTCACTTTAATTTGTACATATTGCATATATTATATTTGAACAAAATACATTGTAATGTTACATCATTGTTTGCCGTCTTCATAGTATGATTGAGCTTCCTGCCCACCCAGTCTTCAGGCACTCACAAGCAAAACACACTCCTCTACA

Function

NR:

description
CD2-associated protein-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021613195.2 False 1315 mRNA 0.46 5 61184985 61189649
XM_021613196.2 True 1261 mRNA 0.46 4 61184992 61189646

Neighbor

gene id symbol gene type direction distance location
LOC110530271 LOC106569036 coding downstream 44359 61118099 ~ 61140626 (-)
LOC110530262 LOC106568824 coding downstream 557509 60600202 ~ 60627476 (-)
gtpbp4 gtpbp4 coding downstream 873385 60301157 ~ 60311600 (-)
LOC118965687 NA coding downstream 877573 60307231 ~ 60307412 (-)
LOC110530257 LOC106568828 coding downstream 886891 60275288 ~ 60298094 (-)
adhfe1 adhfe1 coding upstream 183 61189832 ~ 61200997 (-)
LOC110530276 LOC106569041 coding upstream 32122 61221771 ~ 61233430 (-)
LOC110529124 dnajc5b coding upstream 44224 61233873 ~ 61239771 (-)
LOC110530281 bhlhe22 coding upstream 150353 61340002 ~ 61341211 (-)
LOC110530300 NA coding upstream 814523 62004172 ~ 62033993 (-)
G731295 NA non-coding downstream 11724 61173034 ~ 61173261 (-)
G731292 LOC106569038 non-coding downstream 14559 61170126 ~ 61170426 (-)
G731287 NA non-coding downstream 24113 61157931 ~ 61160872 (-)
G731256 LOC106569033 non-coding downstream 95325 61086151 ~ 61089660 (-)
G731232 NA non-coding downstream 130998 61053782 ~ 61053987 (-)
G731360 NA non-coding upstream 98663 61288312 ~ 61288553 (-)
G731344 NA non-coding upstream 105714 61295363 ~ 61297184 (-)
G731365 NA non-coding upstream 116671 61306320 ~ 61306549 (-)
G731367 NA non-coding upstream 119926 61309575 ~ 61310085 (-)
G731375 NA non-coding upstream 135577 61325226 ~ 61325525 (-)
LOC110530228 LOC106569007 other downstream 3321108 57858233 ~ 57864165 (-)
G726900 NA other downstream 3338296 57820047 ~ 57846689 (-)
G726885 NA other downstream 3373563 57805388 ~ 57811422 (-)
chd7 LOC106599585 other downstream 3879459 57224058 ~ 57305576 (-)
G726496 NA other downstream 4047872 57136141 ~ 57137113 (-)
G731764 NA other upstream 855386 62045035 ~ 62048119 (-)
LOC110530961 dhx9 other upstream 991038 62165849 ~ 62185180 (-)
G735880 NA other upstream 3800652 64990301 ~ 65040241 (-)
G736216 NA other upstream 4328518 65518167 ~ 65528583 (-)
G736841 LOC106569214 other upstream 4911447 66101096 ~ 66101627 (-)

Expression


Co-expression Network