LOC110530276 (LOC106569041)


Basic Information

Item Value
gene id LOC110530276
gene name LOC106569041
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 61221771 ~ 61233430 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021613198.2
TTTCTAAAAACAGCCTGTGACATTGGATTGCCAGCTAGGGAGCAACGCAATCCGTTAGAAGAAACTTTGAGGACAGCAACGAGCGCCTGAGCAGGCCCAGTGACTCTGCATTGTTCAAAAGGAGTAGACATCTTTGATATTTGCCAAGTTAGTTCTTTAGGGATTGGGGGACCATTGGGGGACCATTTGTTGGTATCCCTAAAGATCagtagtgtttttgtttttcaacTGTGCAATGAGTATCTCTCTGGGGTATTCACATTCCACAAAACAAgacagcaccatggacagcttgGAGAAACAGCTCATTTGCCCTATCTGTTTGGAGATGTTTACCAAACCGGTGGTCATTCTCCCTTGTCAACACAACCTTTGTCGAAAATGTGCCCAAGATATTTTCCAGGCCTCAAACCCTTATCTATCGACCAGAGGAACCACTGTGACTTCAGGGGGGCGTTTCCGCTGCCCATCCTGCAGACATGAGGTGGTCCTGGACAGGCATGGTGTCTATGGCCTCCAGAGGAACCTGCTGGTGGAGAATATCATTGATATGTACAAACAGGAACAGGAGTCCTCAAGCAGcaagcctgagcctgagcctgccaGGTGTGACCAGCCCATGTGTGAGGAGCATGAGGATGAGAAGATAAACATCTACTGTGTGACGTGTGGTGTGCCCACCTGCTCTCTCTGCAAGGTGTTCGGAGCCCACAAAGACTGTGATGTGGCCCCAATCAACACTGTGTTCAATAAGCAAAAGactgAGTTGACTGACTGTATAGCCATGCTAGTGGGGAACAACGACAGGATTCAAGGCATCATGAGTCAACTGGATGAGACCTGTAAGACCGTTGAGGAGAATGGCAGGAGGCAGAAATCCAATGTGTGTGAAAGTTTTGATCACCTTTATGCCATCCTGGAGGAGCGGAAAGGGGACATGACCCTGAAGATCAACGCAGAGCAACAAGAGAAACTGGACTATATAAATGGCCTCATGAGGAAGTATAGAGAGCACCTGGAGAACATGGCAAAGATCGTGGAGACAGGGATACAGACAATGGAGGAGTCAGAGATGGCTACTTTCCTGCAGACTGCAAAGCCTCTTCTACAAAAGCTCATTGCAGGCACTAACATCTCCAACCTGGACAAAGTGGAGCGTGGCTATGACAACATGGATCACTACGCAGCCAACTTTGAGCGGGAGAGGAGGGCACTGCACACCATAGACTTTGTGAAAGatgatgaagatgatgatgagtTTGAGTTTGAAGATGGAGAAGAGGAAGTAGAAGTGAGTGGAGTGACAGGGGTGACCCGTACAGATGTCTCTCCTGCTGCTGCAGTGGCTGTTGGGGCCAACCCTCCAAAGCCCCAGCTGACATCACCCCCACCCCTGCCTCAGAGACCTACTGAAACCCTAGGCGACACCGCTACACTGGCCACTCCACAGGCCCCCGTCCATGCAACAACCCCGGTACAATTCCCATCCTTAAACCCAACCCCAACTGCCAGCGCACAGGCCCGCGCCACAACCCCAGTCTACTTCCCAACTTCAACCACAACACCAGTTCAGTTCCCAAGCACAGCCCCGGTCAACTTCCCATCAGCAGAGCCACCGACACAGATGTCCTCTGAATCGGGATCAACTCAGCAAAACACAGATGACAAAGATGGACCCAAACACGTCTTCTCCTTTTCTTGGCTGAACAACCAGAAATAGATTATCATCTTACCTCAAGACCGTACTGAAATTGTTGTAATACTCCATTGTCTTGATTGAGTCAGCATCCTGCTGCAGGAACGGTTTAAATAAGTACTCTGTTACCGTTGAATAACTGTAATTTATCTGTAAATGCTCTCTAGCACTTGCAGTATATTCGTCATACTGTGAAAACAAACGTCATTGGGCTGATTTCTGACTTGAGAAAACTGTGCTTAATTTGGCACACCTTTGCGCAATAGATTTACGCGCCAGTCAGAAGAACAaccagaatgtatttatacaCTCAATTTAGGCTACACAGCAAGCAATAAATGTAACTTTTCAACTTTTTTATTACAAATATAAATATTAGACGTTC

Function

NR:

description
E3 ubiquitin-protein ligase TRIM63-like

GO: NA

KEGG:

id description
K10654 TRIM55, MURF2; tripartite motif-containing protein 55

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021613198.2 True 2081 mRNA 0.48 9 61221771 61233430

Neighbor

gene id symbol gene type direction distance location
adhfe1 adhfe1 coding downstream 20774 61189832 ~ 61200997 (-)
si:dkey-97a13.12 LOC106569040 coding downstream 32122 61184985 ~ 61189649 (-)
LOC110530271 LOC106569036 coding downstream 81145 61118099 ~ 61140626 (-)
LOC110530262 LOC106568824 coding downstream 594295 60600202 ~ 60627476 (-)
gtpbp4 gtpbp4 coding downstream 910171 60301157 ~ 60311600 (-)
LOC110529124 dnajc5b coding upstream 443 61233873 ~ 61239771 (-)
LOC110530281 bhlhe22 coding upstream 106572 61340002 ~ 61341211 (-)
LOC110530300 NA coding upstream 770742 62004172 ~ 62033993 (-)
LOC110530302 LOC106569065 coding upstream 816473 62049903 ~ 62064021 (-)
LOC110530303 LOC106569067 coding upstream 834567 62067997 ~ 62145625 (-)
G731295 NA non-coding downstream 48510 61173034 ~ 61173261 (-)
G731292 LOC106569038 non-coding downstream 51345 61170126 ~ 61170426 (-)
G731287 NA non-coding downstream 60899 61157931 ~ 61160872 (-)
G731256 LOC106569033 non-coding downstream 132111 61086151 ~ 61089660 (-)
G731232 NA non-coding downstream 167784 61053782 ~ 61053987 (-)
G731360 NA non-coding upstream 54882 61288312 ~ 61288553 (-)
G731344 NA non-coding upstream 61933 61295363 ~ 61297184 (-)
G731365 NA non-coding upstream 72890 61306320 ~ 61306549 (-)
G731367 NA non-coding upstream 76145 61309575 ~ 61310085 (-)
G731375 NA non-coding upstream 91796 61325226 ~ 61325525 (-)
LOC110530228 LOC106569007 other downstream 3357894 57858233 ~ 57864165 (-)
G726900 NA other downstream 3375082 57820047 ~ 57846689 (-)
G726885 NA other downstream 3410349 57805388 ~ 57811422 (-)
chd7 LOC106599585 other downstream 3916245 57224058 ~ 57305576 (-)
G726496 NA other downstream 4084658 57136141 ~ 57137113 (-)
G731764 NA other upstream 811605 62045035 ~ 62048119 (-)
LOC110530961 dhx9 other upstream 947257 62165849 ~ 62185180 (-)
G735880 NA other upstream 3756871 64990301 ~ 65040241 (-)
G736216 NA other upstream 4284737 65518167 ~ 65528583 (-)
G736841 LOC106569214 other upstream 4867666 66101096 ~ 66101627 (-)

Expression


Co-expression Network